| Source ID |
Type |
Tax ID |
Position |
| ENSG00000188316-ENSG00000187164 |
CGP |
9606 |
10:116849512-117126586  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0004H0_0002 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0004H0_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0004H0_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSDARG00000039697' => 'si:ch73-56p18.4',
'ENSDARG00000070598' => 'enolase family member 4',
'ENSG00000187164' => 'KIAA1598',
'ENSG00000188316' => 'enolase family member 4',
'ENSG00000225302' => null,
'ENSG00000235742' => null,
'ENSMUSG00000041362' => 'RIKEN cDNA 4930506M07 gene',
'ENSMUSG00000048029' => 'enolase 4'
),
'gene_name_arr' => array(
'ENSDARG00000039697' => 'si:ch73-56p18.4',
'ENSDARG00000070598' => 'eno4',
'ENSG00000187164' => 'KIAA1598',
'ENSG00000188316' => 'ENO4',
'ENSG00000225302' => 'RP11-539I5.1',
'ENSG00000235742' => 'RP11-5G18.2',
'ENSMUSG00000041362' => '4930506M07Rik',
'ENSMUSG00000048029' => 'Eno4'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 8 => 'Bladder',
(int) 15 => 'Brain',
(int) 22 => 'Breast',
(int) 27 => 'Colon',
(int) 33 => 'Heart',
(int) 42 => 'Kidney',
(int) 49 => 'Liver',
(int) 54 => 'Lung',
(int) 58 => 'Muscle',
(int) 62 => 'Ovary',
(int) 68 => 'Placenta',
(int) 74 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 20,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENSDART00000058027' => array(
'start' => '21141416',
'end' => '21198790',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch73-56p18.4-001'
),
'ENSDART00000103845' => array(
'start' => '21125147',
'end' => '21141428',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'eno4-001'
),
'ENST00000260777' => array(
'start' => '116883377',
'end' => '117005577',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIAA1598-201'
),
'ENST00000355371' => array(
'start' => '116883377',
'end' => '117005577',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIAA1598-202'
),
'ENST00000392901' => array(
'start' => '116900312',
'end' => '117126586',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIAA1598-203'
),
'ENST00000392903' => array(
'start' => '116900312',
'end' => '117005577',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIAA1598-204'
),
'ENST00000490615' => array(
'start' => '116954049',
'end' => '116960331',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIAA1598-004'
),
'ENST00000497044' => array(
'start' => '116884797',
'end' => '116974170',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIAA1598-002'
),
'ENST00000615301' => array(
'start' => '116881482',
'end' => '117005365',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIAA1598-001'
),
'ENST00000341276' => array(
'start' => '116849512',
'end' => '116882601',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ENO4-201'
),
'ENST00000369207' => array(
'start' => '116859034',
'end' => '116911788',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ENO4-001'
),
'ENST00000409522' => array(
'start' => '116849512',
'end' => '116882527',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ENO4-002'
),
'ENST00000512864' => array(
'start' => '116849583',
'end' => '116856628',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ENO4-003'
),
'ENST00000622726' => array(
'start' => '116849512',
'end' => '116882601',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ENO4-202'
),
'ENST00000434227' => array(
'start' => '116834978',
'end' => '116850205',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-539I5.1-002'
),
'ENST00000453491' => array(
'start' => '116828761',
'end' => '116849701',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-539I5.1-001'
),
'ENST00000451232' => array(
'start' => '117023674',
'end' => '117023851',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-5G18.2-001'
),
'ENSMUST00000047511' => array(
'start' => '58973358',
'end' => '59076069',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '4930506M07Rik-201'
),
'ENSMUST00000163821' => array(
'start' => '58973358',
'end' => '59076069',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '4930506M07Rik-202'
),
'ENSMUST00000054280' => array(
'start' => '58943425',
'end' => '58971419',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Eno4-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0004H0_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0004H0_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0004H0_0001' => array(
'genes_in_region' => array(
'ENSDARG00000039697' => array(
[maximum depth reached]
),
'ENSDARG00000070598' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney'
)
),
'CIL_0004H0_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000041362' => array(
[maximum depth reached]
),
'ENSMUSG00000048029' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adrenal',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Heart',
(int) 18 => 'Placenta',
(int) 19 => 'Testis',
(int) 20 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 22 => 'Bladder',
(int) 23 => 'Brain',
(int) 24 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSDARG00000039697' => 'si:ch73-56p18.4',
'ENSDARG00000070598' => 'enolase family member 4',
'ENSG00000187164' => 'KIAA1598',
'ENSG00000188316' => 'enolase family member 4',
'ENSG00000225302' => null,
'ENSG00000235742' => null,
'ENSMUSG00000041362' => 'RIKEN cDNA 4930506M07 gene',
'ENSMUSG00000048029' => 'enolase 4'
)
$gene_name_arr = array(
'ENSDARG00000039697' => 'si:ch73-56p18.4',
'ENSDARG00000070598' => 'eno4',
'ENSG00000187164' => 'KIAA1598',
'ENSG00000188316' => 'ENO4',
'ENSG00000225302' => 'RP11-539I5.1',
'ENSG00000235742' => 'RP11-5G18.2',
'ENSMUSG00000041362' => '4930506M07Rik',
'ENSMUSG00000048029' => 'Eno4'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0004H0_0001',
'tax_id' => '7955',
'chromosome' => '17',
'seq_start' => '21125147',
'seq_end' => '21198790',
'region_length' => '73643',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000070598-ENSDARG00000039697'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0004H0_0002',
'tax_id' => '9606',
'chromosome' => '10',
'seq_start' => '116849512',
'seq_end' => '117126586',
'region_length' => '277074',
'region_type' => 'CGP',
'el_id' => 'ENSG00000188316-ENSG00000187164'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0004H0_0003',
'tax_id' => '10090',
'chromosome' => '19',
'seq_start' => '58943425',
'seq_end' => '59076069',
'region_length' => '132644',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000048029-ENSMUSG00000041362'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 8 => 'Bladder',
(int) 15 => 'Brain',
(int) 22 => 'Breast',
(int) 27 => 'Colon',
(int) 33 => 'Heart',
(int) 42 => 'Kidney',
(int) 49 => 'Liver',
(int) 54 => 'Lung',
(int) 58 => 'Muscle',
(int) 62 => 'Ovary',
(int) 68 => 'Placenta',
(int) 74 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 20
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENSDART00000058027' => array(
'start' => '21141416',
'end' => '21198790',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch73-56p18.4-001'
),
'ENSDART00000103845' => array(
'start' => '21125147',
'end' => '21141428',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'eno4-001'
),
'ENST00000260777' => array(
'start' => '116883377',
'end' => '117005577',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIAA1598-201'
),
'ENST00000355371' => array(
'start' => '116883377',
'end' => '117005577',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIAA1598-202'
),
'ENST00000392901' => array(
'start' => '116900312',
'end' => '117126586',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIAA1598-203'
),
'ENST00000392903' => array(
'start' => '116900312',
'end' => '117005577',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIAA1598-204'
),
'ENST00000490615' => array(
'start' => '116954049',
'end' => '116960331',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIAA1598-004'
),
'ENST00000497044' => array(
'start' => '116884797',
'end' => '116974170',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIAA1598-002'
),
'ENST00000615301' => array(
'start' => '116881482',
'end' => '117005365',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIAA1598-001'
),
'ENST00000341276' => array(
'start' => '116849512',
'end' => '116882601',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ENO4-201'
),
'ENST00000369207' => array(
'start' => '116859034',
'end' => '116911788',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ENO4-001'
),
'ENST00000409522' => array(
'start' => '116849512',
'end' => '116882527',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ENO4-002'
),
'ENST00000512864' => array(
'start' => '116849583',
'end' => '116856628',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ENO4-003'
),
'ENST00000622726' => array(
'start' => '116849512',
'end' => '116882601',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ENO4-202'
),
'ENST00000434227' => array(
'start' => '116834978',
'end' => '116850205',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-539I5.1-002'
),
'ENST00000453491' => array(
'start' => '116828761',
'end' => '116849701',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-539I5.1-001'
),
'ENST00000451232' => array(
'start' => '117023674',
'end' => '117023851',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-5G18.2-001'
),
'ENSMUST00000047511' => array(
'start' => '58973358',
'end' => '59076069',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '4930506M07Rik-201'
),
'ENSMUST00000163821' => array(
'start' => '58973358',
'end' => '59076069',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '4930506M07Rik-202'
),
'ENSMUST00000054280' => array(
'start' => '58943425',
'end' => '58971419',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Eno4-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0004H0_0001' => array(
'genes_in_region' => array(
'ENSDARG00000039697' => array(
[maximum depth reached]
),
'ENSDARG00000070598' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney'
)
),
'CIL_0004H0_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000041362' => array(
[maximum depth reached]
),
'ENSMUSG00000048029' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adrenal',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Heart',
(int) 18 => 'Placenta',
(int) 19 => 'Testis',
(int) 20 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 22 => 'Bladder',
(int) 23 => 'Brain',
(int) 24 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0004H0_0002',
'tax_id' => '9606',
'chromosome' => '10',
'seq_start' => '116849512',
'seq_end' => '117126586',
'region_length' => '277074',
'region_type' => 'CGP',
'el_id' => 'ENSG00000188316-ENSG00000187164'
)
)
$gene_el = array(
'ENSDART00000103845' => array(
'Brain' => array(
'average_FPKM' => '0.347',
'stddev_FPKM' => '0.29'
),
'Heart' => array(
'average_FPKM' => '0.147',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '3.218',
'stddev_FPKM' => '2.37'
)
)
)
$gene_key = 'ENSDARG00000070598'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '0.347',
'stddev_FPKM' => '0.29'
),
'Heart' => array(
'average_FPKM' => '0.147',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '3.218',
'stddev_FPKM' => '2.37'
)
)
$tran_key = 'ENSDART00000103845'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0004H0_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0004H0_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSDARG00000039697' => 'si:ch73-56p18.4',
'ENSDARG00000070598' => 'enolase family member 4',
'ENSG00000187164' => 'KIAA1598',
'ENSG00000188316' => 'enolase family member 4',
'ENSG00000225302' => null,
'ENSG00000235742' => null,
'ENSMUSG00000041362' => 'RIKEN cDNA 4930506M07 gene',
'ENSMUSG00000048029' => 'enolase 4'
),
'gene_name_arr' => array(
'ENSDARG00000039697' => 'si:ch73-56p18.4',
'ENSDARG00000070598' => 'eno4',
'ENSG00000187164' => 'KIAA1598',
'ENSG00000188316' => 'ENO4',
'ENSG00000225302' => 'RP11-539I5.1',
'ENSG00000235742' => 'RP11-5G18.2',
'ENSMUSG00000041362' => '4930506M07Rik',
'ENSMUSG00000048029' => 'Eno4'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 8 => 'Bladder',
(int) 15 => 'Brain',
(int) 22 => 'Breast',
(int) 27 => 'Colon',
(int) 33 => 'Heart',
(int) 42 => 'Kidney',
(int) 49 => 'Liver',
(int) 54 => 'Lung',
(int) 58 => 'Muscle',
(int) 62 => 'Ovary',
(int) 68 => 'Placenta',
(int) 74 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 20,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENSDART00000058027' => array(
'start' => '21141416',
'end' => '21198790',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch73-56p18.4-001'
),
'ENSDART00000103845' => array(
'start' => '21125147',
'end' => '21141428',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'eno4-001'
),
'ENST00000260777' => array(
'start' => '116883377',
'end' => '117005577',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIAA1598-201'
),
'ENST00000355371' => array(
'start' => '116883377',
'end' => '117005577',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIAA1598-202'
),
'ENST00000392901' => array(
'start' => '116900312',
'end' => '117126586',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIAA1598-203'
),
'ENST00000392903' => array(
'start' => '116900312',
'end' => '117005577',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIAA1598-204'
),
'ENST00000490615' => array(
'start' => '116954049',
'end' => '116960331',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIAA1598-004'
),
'ENST00000497044' => array(
'start' => '116884797',
'end' => '116974170',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIAA1598-002'
),
'ENST00000615301' => array(
'start' => '116881482',
'end' => '117005365',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIAA1598-001'
),
'ENST00000341276' => array(
'start' => '116849512',
'end' => '116882601',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ENO4-201'
),
'ENST00000369207' => array(
'start' => '116859034',
'end' => '116911788',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ENO4-001'
),
'ENST00000409522' => array(
'start' => '116849512',
'end' => '116882527',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ENO4-002'
),
'ENST00000512864' => array(
'start' => '116849583',
'end' => '116856628',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ENO4-003'
),
'ENST00000622726' => array(
'start' => '116849512',
'end' => '116882601',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ENO4-202'
),
'ENST00000434227' => array(
'start' => '116834978',
'end' => '116850205',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-539I5.1-002'
),
'ENST00000453491' => array(
'start' => '116828761',
'end' => '116849701',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-539I5.1-001'
),
'ENST00000451232' => array(
'start' => '117023674',
'end' => '117023851',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-5G18.2-001'
),
'ENSMUST00000047511' => array(
'start' => '58973358',
'end' => '59076069',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '4930506M07Rik-201'
),
'ENSMUST00000163821' => array(
'start' => '58973358',
'end' => '59076069',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '4930506M07Rik-202'
),
'ENSMUST00000054280' => array(
'start' => '58943425',
'end' => '58971419',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Eno4-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0004H0_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0004H0_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0004H0_0001' => array(
'genes_in_region' => array(
'ENSDARG00000039697' => array(
[maximum depth reached]
),
'ENSDARG00000070598' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney'
)
),
'CIL_0004H0_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000041362' => array(
[maximum depth reached]
),
'ENSMUSG00000048029' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adrenal',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Heart',
(int) 18 => 'Placenta',
(int) 19 => 'Testis',
(int) 20 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 22 => 'Bladder',
(int) 23 => 'Brain',
(int) 24 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSDARG00000039697' => 'si:ch73-56p18.4',
'ENSDARG00000070598' => 'enolase family member 4',
'ENSG00000187164' => 'KIAA1598',
'ENSG00000188316' => 'enolase family member 4',
'ENSG00000225302' => null,
'ENSG00000235742' => null,
'ENSMUSG00000041362' => 'RIKEN cDNA 4930506M07 gene',
'ENSMUSG00000048029' => 'enolase 4'
)
$gene_name_arr = array(
'ENSDARG00000039697' => 'si:ch73-56p18.4',
'ENSDARG00000070598' => 'eno4',
'ENSG00000187164' => 'KIAA1598',
'ENSG00000188316' => 'ENO4',
'ENSG00000225302' => 'RP11-539I5.1',
'ENSG00000235742' => 'RP11-5G18.2',
'ENSMUSG00000041362' => '4930506M07Rik',
'ENSMUSG00000048029' => 'Eno4'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0004H0_0001',
'tax_id' => '7955',
'chromosome' => '17',
'seq_start' => '21125147',
'seq_end' => '21198790',
'region_length' => '73643',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000070598-ENSDARG00000039697'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0004H0_0002',
'tax_id' => '9606',
'chromosome' => '10',
'seq_start' => '116849512',
'seq_end' => '117126586',
'region_length' => '277074',
'region_type' => 'CGP',
'el_id' => 'ENSG00000188316-ENSG00000187164'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0004H0_0003',
'tax_id' => '10090',
'chromosome' => '19',
'seq_start' => '58943425',
'seq_end' => '59076069',
'region_length' => '132644',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000048029-ENSMUSG00000041362'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 8 => 'Bladder',
(int) 15 => 'Brain',
(int) 22 => 'Breast',
(int) 27 => 'Colon',
(int) 33 => 'Heart',
(int) 42 => 'Kidney',
(int) 49 => 'Liver',
(int) 54 => 'Lung',
(int) 58 => 'Muscle',
(int) 62 => 'Ovary',
(int) 68 => 'Placenta',
(int) 74 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 20
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENSDART00000058027' => array(
'start' => '21141416',
'end' => '21198790',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch73-56p18.4-001'
),
'ENSDART00000103845' => array(
'start' => '21125147',
'end' => '21141428',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'eno4-001'
),
'ENST00000260777' => array(
'start' => '116883377',
'end' => '117005577',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIAA1598-201'
),
'ENST00000355371' => array(
'start' => '116883377',
'end' => '117005577',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIAA1598-202'
),
'ENST00000392901' => array(
'start' => '116900312',
'end' => '117126586',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIAA1598-203'
),
'ENST00000392903' => array(
'start' => '116900312',
'end' => '117005577',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIAA1598-204'
),
'ENST00000490615' => array(
'start' => '116954049',
'end' => '116960331',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIAA1598-004'
),
'ENST00000497044' => array(
'start' => '116884797',
'end' => '116974170',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KIAA1598-002'
),
'ENST00000615301' => array(
'start' => '116881482',
'end' => '117005365',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KIAA1598-001'
),
'ENST00000341276' => array(
'start' => '116849512',
'end' => '116882601',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ENO4-201'
),
'ENST00000369207' => array(
'start' => '116859034',
'end' => '116911788',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ENO4-001'
),
'ENST00000409522' => array(
'start' => '116849512',
'end' => '116882527',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ENO4-002'
),
'ENST00000512864' => array(
'start' => '116849583',
'end' => '116856628',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ENO4-003'
),
'ENST00000622726' => array(
'start' => '116849512',
'end' => '116882601',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ENO4-202'
),
'ENST00000434227' => array(
'start' => '116834978',
'end' => '116850205',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-539I5.1-002'
),
'ENST00000453491' => array(
'start' => '116828761',
'end' => '116849701',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-539I5.1-001'
),
'ENST00000451232' => array(
'start' => '117023674',
'end' => '117023851',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-5G18.2-001'
),
'ENSMUST00000047511' => array(
'start' => '58973358',
'end' => '59076069',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '4930506M07Rik-201'
),
'ENSMUST00000163821' => array(
'start' => '58973358',
'end' => '59076069',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '4930506M07Rik-202'
),
'ENSMUST00000054280' => array(
'start' => '58943425',
'end' => '58971419',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Eno4-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0004H0_0001' => array(
'genes_in_region' => array(
'ENSDARG00000039697' => array(
[maximum depth reached]
),
'ENSDARG00000070598' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney'
)
),
'CIL_0004H0_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000041362' => array(
[maximum depth reached]
),
'ENSMUSG00000048029' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adrenal',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Heart',
(int) 18 => 'Placenta',
(int) 19 => 'Testis',
(int) 20 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 22 => 'Bladder',
(int) 23 => 'Brain',
(int) 24 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0004H0_0002',
'tax_id' => '9606',
'chromosome' => '10',
'seq_start' => '116849512',
'seq_end' => '117126586',
'region_length' => '277074',
'region_type' => 'CGP',
'el_id' => 'ENSG00000188316-ENSG00000187164'
)
)
$gene_el = array(
'ENSDART00000103845' => array(
'Brain' => array(
'average_FPKM' => '0.347',
'stddev_FPKM' => '0.29'
),
'Heart' => array(
'average_FPKM' => '0.147',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '3.218',
'stddev_FPKM' => '2.37'
)
)
)
$gene_key = 'ENSDARG00000070598'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '0.347',
'stddev_FPKM' => '0.29'
),
'Heart' => array(
'average_FPKM' => '0.147',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '3.218',
'stddev_FPKM' => '2.37'
)
)
$tran_key = 'ENSDART00000103845'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(si:ch73-56p18.4)