C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004HD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000158435-ENSG00000163162 CGP 9606 2:101252802-101308701
GeneTranscriptPositionBiotype
ENSG00000158435 (CNOT11)
CCR4-NOT transcription complex, subunit 11 		ENST00000289382 (CNOT11-001) 101252802-101270316 protein_coding
ENST00000420107 (CNOT11-003) 101264975-101269315 protein_coding
ENST00000462489 (CNOT11-002) 101262431-101266784 retained_intron
ENSG00000163162 (RNF149)
ring finger protein 149 		ENST00000295317 (RNF149-001) 101276091-101308696 protein_coding
ENST00000424632 (RNF149-002) 101271222-101308701 nonsense_mediated_decay
ENST00000463726 (RNF149-004) 101281859-101286503 retained_intron
ENST00000478404 (RNF149-003) 101288708-101294662 retained_intron
ENST00000485752 (RNF149-006) 101271219-101272936 processed_transcript
ENST00000490553 (RNF149-005) 101281493-101286107 retained_intron
ENSG00000204634 (TBC1D8)
TBC1 domain family, member 8 (with GRAM domain) 		ENST00000376840 (TBC1D8-011) 101007617-101151253 protein_coding
ENST00000409318 (TBC1D8-001) 101007617-101151384 protein_coding
ENST00000462819 (TBC1D8-006) 101187824-101252855 processed_transcript
ENST00000463469 (TBC1D8-004) 101090253-101252866 processed_transcript
ENST00000473937 (TBC1D8-007) 101028303-101032944 retained_intron
ENST00000481317 (TBC1D8-008) 101028467-101032481 processed_transcript
ENST00000485851 (TBC1D8-005) 101187984-101252864 processed_transcript
ENST00000485875 (TBC1D8-009) 101028345-101029972 retained_intron
ENST00000487392 (TBC1D8-003) 101059452-101109963 processed_transcript
ENST00000494011 (TBC1D8-010) 101011040-101022373 retained_intron
CIL_0004HD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000003135-ENSMUSG00000048234 CGP 10090 1:39534992-39577405
GeneTranscriptPositionBiotype
ENSMUSG00000003135 (Cnot11)
CCR4-NOT transcription complex, subunit 11 		ENSMUST00000003219 (Cnot11-201) 39535802-39546873 protein_coding
ENSMUST00000160145 (Cnot11-002) 39538245-39546483 processed_transcript
ENSMUST00000161515 (Cnot11-001) 39534992-39546881 protein_coding
ENSMUSG00000048234 (Rnf149)
ring finger protein 149 		ENSMUST00000062525 (Rnf149-001) 39551296-39577405 protein_coding
ENSMUST00000153381 (Rnf149-002) 39555605-39558757 processed_transcript
ENSMUSG00000064936 (Gm23722)
predicted gene, 23722 		ENSMUST00000083002 (Gm23722-201) 39573746-39573875 snoRNA
ENSMUSG00000077704 (Snord89)
small nucleolar RNA, C/D box 89 		ENSMUST00000104516 (Snord89-201) 39548745-39548854 snoRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004HD_0001ENSG00000158435ENST00000289382ENST00000420107ENST00000462489ENSG00000163162ENST00000295317ENST00000424632ENST00000463726ENST00000478404ENST00000485752ENST00000490553ENSG00000204634ENST00000376840ENST00000409318ENST00000462819ENST00000463469ENST00000473937ENST00000481317ENST00000485851ENST00000485875ENST00000487392ENST00000494011CIL_0004HD_0002ENSMUSG00000003135ENSMUST00000003219ENSMUST00000160145ENSMUST00000161515ENSMUSG00000048234ENSMUST00000062525ENSMUST00000153381ENSMUSG00000064936ENSMUST00000083002ENSMUSG00000077704ENSMUST00000104516
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004HD_0001ENSG00000158435ENST00000289382ENSG00000163162ENST00000295317ENST00000424632ENST00000478404ENST00000485752ENSG00000204634ENST00000376840ENST00000409318CIL_0004HD_0002ENSMUSG00000003135ENSMUST00000003219ENSMUST00000160145ENSMUST00000161515ENSMUSG00000048234ENSMUST00000062525ENSMUSG00000064936ENSMUST00000083002ENSMUSG00000077704ENSMUST00000104516
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000158435 ENST00000289382 9.067±0.00 14.697±0.00 3.598±0.00 4.996±1.43 7.271±1.83 10.965±2.23 7.939±4.39 11.143±6.99 8.145±1.42 6.300±2.05 7.244±2.21 31.729±15.83 25.494±3.53 21.884±0.84
ENST00000420107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462489 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000163162 ENST00000295317 16.883±0.00 13.324±0.00 2.887±0.00 3.597±0.62 8.831±1.10 8.331±0.14 2.847±2.24 6.212±2.68 5.250±0.27 12.312±0.31 1.574±0.37 14.878±4.34 13.051±2.53 12.687±5.67
ENST00000424632 N/A N/A N/A 2.206±0.00 N/A 2.544±0.00 2.047±0.00 4.235±0.00 2.146±0.00 6.223±0.00 1.589±0.68 N/A N/A 4.892±0.00
ENST00000463726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.731±0.00 N/A N/A N/A
ENST00000485752 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.548±0.00 N/A N/A N/A
ENST00000490553 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000204634 ENST00000376840 4.490±0.00 5.079±0.00 2.052±0.00 1.897±0.00 3.534±1.01 2.792±0.50 5.004±2.96 5.666±3.25 4.110±2.16 8.375±2.96 4.556±1.70 7.741±3.85 1.712±0.00 9.970±0.12
ENST00000409318 1.992±0.00 N/A N/A 1.447±0.00 N/A N/A 2.343±1.16 N/A N/A N/A 3.867±1.65 N/A N/A N/A
ENST00000462819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463469 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473937 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485851 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485875 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494011 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000003135 ENSMUST00000003219 7.060±2.51 18.154±3.05 8.501±0.29 7.520±3.40 10.352±3.71 8.734±2.85 3.976±0.15 7.938±1.42 4.454±1.22 8.088±1.91 7.474±0.48 12.255±5.83 5.110±0.94 3.789±1.54
ENSMUST00000160145 N/A N/A N/A N/A 4.166±0.00 N/A N/A N/A N/A N/A 1.000±0.00 3.393±0.28 2.519±1.30 N/A
ENSMUST00000161515 1.842±0.66 5.649±1.18 1.180±0.23 2.934±0.71 5.345±1.00 3.092±0.86 1.190±0.26 3.087±0.97 1.771±0.50 1.679±0.09 N/A 6.983±2.58 1.038±0.00 1.612±0.77
ENSMUSG00000048234 ENSMUST00000062525 13.459±6.72 47.959±20.75 10.705±1.03 9.198±1.55 8.906±5.21 25.734±12.55 1.690±0.33 22.244±4.04 31.035±14.22 15.066±1.18 1.786±0.15 30.319±10.08 12.635±6.74 5.068±1.33
ENSMUST00000153381 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000064936 ENSMUST00000083002 N/A N/A N/A N/A N/A N/A N/A N/A 6.769±0.00 N/A N/A 7.730±0.00 19.056±9.36 N/A
ENSMUSG00000077704 ENSMUST00000104516 N/A N/A N/A 10.946±0.00 5268.740±0.00 N/A N/A N/A 24.816±0.00 N/A N/A 68.505±0.00 N/A N/A

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