C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004HL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000144218-ENSG00000170500 CGP 9606 2:99545419-100322733
GeneTranscriptPositionBiotype
ENSG00000144218 (AFF3)
AF4/FMR2 family, member 3 		ENST00000317233 (AFF3-201) 99547256-100142575 protein_coding
ENST00000409236 (AFF3-001) 99545419-100104716 protein_coding
ENST00000409579 (AFF3-002) 99551121-100106128 protein_coding
ENST00000415384 (AFF3-009) 100008899-100106047 protein_coding
ENST00000416492 (AFF3-005) 100007337-100142583 protein_coding
ENST00000423966 (AFF3-003) 100007169-100142575 protein_coding
ENST00000424600 (AFF3-006) 100007293-100105339 protein_coding
ENST00000427118 (AFF3-010) 100104402-100106047 protein_coding
ENST00000430789 (AFF3-012) 99630578-100006845 nonsense_mediated_decay
ENST00000432037 (AFF3-014) 100007152-100104530 protein_coding
ENST00000440445 (AFF3-008) 100007399-100105807 protein_coding
ENST00000441400 (AFF3-007) 100007249-100105427 protein_coding
ENST00000445815 (AFF3-015) 99554393-99578370 protein_coding
ENST00000483600 (AFF3-011) 100109845-100142739 processed_transcript
ENST00000498090 (AFF3-013) 100006149-100007951 retained_intron
ENSG00000170500 (LONRF2)
LON peptidase N-terminal domain and ring finger 2 		ENST00000393437 (LONRF2-001) 100273291-100322733 protein_coding
ENST00000409647 (LONRF2-002) 100283542-100309505 protein_coding
ENSG00000232084 (LINC01104)
long intergenic non-protein coding RNA 1104 		ENST00000441036 (LINC01104-002) 100242631-100249262 lincRNA
ENST00000452354 (LINC01104-001) 100208254-100251484 lincRNA
CIL_0004HL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037138-ENSMUSG00000048814 CGP 10090 1:38177326-38836090
GeneTranscriptPositionBiotype
ENSMUSG00000037138 (Aff3)
AF4/FMR2 family, member 3 		ENSMUST00000027250 (Aff3-001) 38335431-38664955 protein_coding
ENSMUST00000039827 (Aff3-201) 38177327-38664955 protein_coding
ENSMUST00000095027 (Aff3-002) 38177326-38627185 protein_coding
ENSMUST00000134963 (Aff3-004) 38535159-38664955 nonsense_mediated_decay
ENSMUST00000136641 (Aff3-005) 38181262-38197443 protein_coding
ENSMUST00000142875 (Aff3-003) 38179243-38627201 nonsense_mediated_decay
ENSMUSG00000048814 (Lonrf2)
LON peptidase N-terminal domain and ring finger 2 		ENSMUST00000039612 (Lonrf2-201) 38794509-38821215 protein_coding
ENSMUST00000147695 (Lonrf2-001) 38793669-38836090 protein_coding
ENSMUSG00000085280 (Gm16151)
predicted gene 16151 		ENSMUST00000129696 (Gm16151-001) 38307902-38311930 antisense
ENSMUSG00000085391 (Gm16150)
predicted gene 16150 		ENSMUST00000127620 (Gm16150-001) 38235420-38245603 antisense
ENSMUST00000133299 (Gm16150-002) 38239700-38246666 antisense
ENSMUSG00000087131 (Gm16152)
predicted gene 16152 		ENSMUST00000131663 (Gm16152-002) 38388829-38390244 antisense
ENSMUST00000143261 (Gm16152-001) 38384949-38393974 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004HL_0001ENSG00000144218ENST00000317233ENST00000409236ENST00000409579ENST00000415384ENST00000416492ENST00000423966ENST00000424600ENST00000427118ENST00000430789ENST00000432037ENST00000440445ENST00000441400ENST00000445815ENST00000483600ENST00000498090ENSG00000170500ENST00000393437ENST00000409647ENSG00000232084ENST00000441036ENST00000452354CIL_0004HL_0002ENSMUSG00000037138ENSMUST00000027250ENSMUST00000039827ENSMUST00000095027ENSMUST00000134963ENSMUST00000136641ENSMUST00000142875ENSMUSG00000048814ENSMUST00000039612ENSMUST00000147695ENSMUSG00000085280ENSMUST00000129696ENSMUSG00000085391ENSMUST00000127620ENSMUST00000133299ENSMUSG00000087131ENSMUST00000131663ENSMUST00000143261
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004HL_0001ENSG00000144218ENST00000317233ENST00000409236ENST00000409579ENST00000423966ENST00000424600ENST00000432037ENST00000441400ENST00000498090ENSG00000170500ENST00000393437ENST00000409647ENSG00000232084ENST00000441036ENST00000452354CIL_0004HL_0002ENSMUSG00000037138ENSMUST00000027250ENSMUST00000039827ENSMUST00000095027ENSMUST00000136641ENSMUST00000142875ENSMUSG00000048814ENSMUST00000039612ENSMUST00000147695ENSMUSG00000085280ENSMUST00000129696ENSMUSG00000085391ENSMUST00000127620ENSMUST00000133299ENSMUSG00000087131ENSMUST00000131663ENSMUST00000143261
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000144218 ENST00000317233 0.606±0.00 2.633±0.00 0.420±0.00 3.717±0.39 1.454±0.65 1.438±0.87 0.396±0.30 0.539±0.05 1.752±1.58 1.610±0.32 0.186±0.03 0.810±0.96 1.217±0.01 2.511±0.14
ENST00000409236 0.149±0.00 N/A N/A 0.590±0.00 N/A 0.372±0.22 0.085±0.00 N/A 0.096±0.00 N/A N/A 0.153±0.13 N/A 0.579±0.15
ENST00000409579 N/A N/A 0.172±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000415384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000416492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000423966 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.711±0.00 N/A N/A
ENST00000424600 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.685±0.00 N/A N/A N/A
ENST00000427118 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430789 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000432037 N/A N/A N/A N/A N/A N/A 1.039±0.00 N/A N/A 15.383±0.00 N/A N/A N/A N/A
ENST00000440445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.977±0.71 N/A N/A
ENST00000445815 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483600 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.219±0.00 N/A N/A
ENSG00000170500 ENST00000393437 N/A N/A 0.341±0.00 5.291±3.06 0.157±0.00 0.133±0.07 0.857±0.04 0.401±0.00 0.317±0.23 0.268±0.11 0.390±0.15 1.023±0.55 0.163±0.05 0.145±0.00
ENST00000409647 N/A N/A N/A 10.436±0.00 0.679±0.00 N/A 1.646±0.00 N/A 2.877±0.00 N/A 1.008±0.00 N/A 0.486±0.20 N/A
ENSG00000232084 ENST00000441036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.049±0.00
ENST00000452354 0.038±0.00 N/A N/A N/A 0.040±0.00 N/A 0.027±0.00 0.015±0.00 0.004±0.00 N/A N/A 0.023±0.01 N/A 0.016±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000037138 ENSMUST00000027250 N/A N/A N/A N/A N/A N/A N/A N/A 0.081±0.00 N/A N/A N/A N/A N/A
ENSMUST00000039827 N/A 0.305±0.00 0.367±0.00 2.661±0.00 1.592±0.90 0.367±0.08 N/A N/A 0.086±0.00 1.221±0.24 N/A 2.778±0.85 0.140±0.06 0.206±0.01
ENSMUST00000095027 1.081±0.53 N/A 0.589±0.17 11.809±3.66 2.774±1.97 0.180±0.00 0.443±0.12 0.369±0.23 0.139±0.08 4.998±2.17 0.204±0.18 6.743±2.67 0.282±0.24 0.748±0.34
ENSMUST00000134963 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136641 N/A 1.625±0.19 N/A N/A N/A N/A N/A N/A 0.164±0.00 N/A N/A N/A N/A 2.077±0.68
ENSMUST00000142875 N/A N/A N/A N/A 2.056±0.23 0.345±0.08 N/A N/A 0.075±0.00 2.243±0.00 0.067±0.00 4.321±0.00 N/A 0.455±0.10
ENSMUSG00000048814 ENSMUST00000039612 N/A N/A N/A 9.525±0.00 N/A N/A N/A N/A N/A N/A 0.025±0.01 0.244±0.00 0.046±0.02 N/A
ENSMUST00000147695 1.409±1.02 2.031±0.29 1.923±0.69 13.268±5.31 0.435±0.09 0.342±0.08 1.452±0.06 0.226±0.03 0.045±0.04 0.177±0.04 0.088±0.03 1.379±0.62 0.058±0.05 0.180±0.06
ENSMUSG00000085280 ENSMUST00000129696 0.350±0.16 0.156±0.06 0.096±0.06 0.170±0.00 0.168±0.00 N/A 0.137±0.03 N/A 0.088±0.05 0.091±0.04 N/A 0.466±0.25 0.010±0.00 N/A
ENSMUSG00000085391 ENSMUST00000127620 N/A N/A N/A 0.085±0.00 N/A N/A N/A N/A N/A N/A N/A 0.733±0.00 0.034±0.00 N/A
ENSMUST00000133299 0.050±0.00 N/A 0.142±0.11 0.070±0.00 0.158±0.01 N/A 0.073±0.02 N/A 0.056±0.03 0.328±0.16 0.073±0.02 0.438±0.21 0.036±0.04 1.709±0.54
ENSMUSG00000087131 ENSMUST00000131663 0.256±0.09 N/A N/A 0.081±0.06 0.207±0.00 N/A N/A 0.076±0.03 0.083±0.05 0.110±0.04 N/A 0.203±0.10 0.055±0.00 N/A
ENSMUST00000143261 0.134±0.11 0.106±0.04 N/A 0.287±0.00 0.272±0.12 N/A N/A 0.088±0.03 0.031±0.02 0.230±0.09 0.027±0.01 0.158±0.12 0.013±0.00 0.032±0.00

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