C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Region Summary |
| CIL_0004JQ_0001 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSDARG00000038882-ENSDARG00000079238 | CGP | 7955 | 15:1529850-1579343  |
|
| Gene | Transcript | Position | Biotype | |
ENSDARG00000038882  (smc4)structural maintenance of chromosomes 4 |
ENSDART00000056765 (smc4-201)
|
1529851-1568333 | protein_coding | |
|
ENSDART00000130413 (smc4-001)
|
1529850-1568335 | protein_coding | ||
|
ENSDART00000133909 (smc4-002)
|
1555871-1563548 | processed_transcript | ||
|
ENSDARG00000079238 (TRIM59) tripartite motif containing 59 |
ENSDART00000056772 (TRIM59-001)
|
1569562-1579343 | protein_coding | |
| CIL_0004JQ_0002 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSG00000113810-ENSG00000213186 | CGP | 9606 | 3:160399274-160485773 |
|
| Gene | Transcript | Position | Biotype | |
|
ENSG00000068885 (IFT80) intraflagellar transport 80 |
ENST00000326448 (IFT80-001)
|
160256986-160399532 | protein_coding | |
|
ENST00000461213 (IFT80-025)
|
160303944-160320147 | retained_intron | ||
|
ENST00000463240 (IFT80-027)
|
160258419-160277478 | processed_transcript | ||
|
ENST00000465537 (IFT80-022)
|
160356013-160399207 | protein_coding | ||
|
ENST00000465972 (IFT80-018)
|
160377436-160399216 | processed_transcript | ||
|
ENST00000466326 (IFT80-006)
|
160384601-160399880 | processed_transcript | ||
|
ENST00000467254 (IFT80-011)
|
160383985-160399247 | retained_intron | ||
|
ENST00000468218 (IFT80-015)
|
160366055-160399223 | protein_coding | ||
|
ENST00000468327 (IFT80-021)
|
160377442-160399215 | processed_transcript | ||
|
ENST00000472555 (IFT80-024)
|
160303916-160357499 | nonsense_mediated_decay | ||
|
ENST00000472773 (IFT80-016)
|
160357485-160399223 | processed_transcript | ||
|
ENST00000475677 (IFT80-008)
|
160357485-160399544 | protein_coding | ||
|
ENST00000477495 (IFT80-013)
|
160373492-160399245 | processed_transcript | ||
|
ENST00000478278 (IFT80-028)
|
160258403-160268761 | retained_intron | ||
|
ENST00000478370 (IFT80-014)
|
160366083-160399223 | protein_coding | ||
|
ENST00000478460 (IFT80-017)
|
160319833-160399221 | processed_transcript | ||
|
ENST00000478536 (IFT80-007)
|
160381569-160399544 | protein_coding | ||
|
ENST00000482317 (IFT80-019)
|
160375819-160399216 | nonsense_mediated_decay | ||
|
ENST00000483325 (IFT80-026)
|
160299079-160307781 | protein_coding | ||
|
ENST00000483465 (IFT80-004)
|
160256992-160383656 | protein_coding | ||
|
ENST00000484963 (IFT80-023)
|
160356013-160377454 | nonsense_mediated_decay | ||
|
ENST00000486856 (IFT80-020)
|
160366083-160399216 | protein_coding | ||
|
ENST00000487943 (IFT80-003)
|
160258185-160399209 | retained_intron | ||
|
ENST00000489004 (IFT80-012)
|
160377436-160399247 | protein_coding | ||
|
ENST00000496589 (IFT80-002)
|
160258180-160399273 | protein_coding | ||
|
ENST00000498145 (IFT80-010)
|
160381605-160399520 | processed_transcript | ||
|
ENST00000498409 (IFT80-009)
|
160366053-160399533 | protein_coding | ||
|
ENSG00000213186 (TRIM59) tripartite motif containing 59 |
ENST00000309784 (TRIM59-001)
|
160435503-160449829 | protein_coding | |
|
ENST00000468542 (TRIM59-009)
|
160439001-160485773 | protein_coding | ||
|
ENST00000471155 (TRIM59-004)
|
160438841-160449765 | protein_coding | ||
|
ENST00000471396 (TRIM59-005)
|
160438719-160449763 | protein_coding | ||
|
ENST00000479460 (TRIM59-007)
|
160438651-160449725 | protein_coding | ||
|
ENST00000494486 (TRIM59-008)
|
160438849-160449613 | protein_coding | ||
|
ENST00000496222 (TRIM59-006)
|
160438731-160449760 | protein_coding | ||
|
ENST00000543469 (TRIM59-201)
|
160432445-160448937 | protein_coding | ||
|
ENSG00000244009 (B3GAT3P1) beta-1,3-glucuronyltransferase 3 pseudogene 1 |
ENST00000471720 (B3GAT3P1-001)
|
160452598-160453403 | processed_pseudogene | |
|
ENSG00000248710 (RP11-432B6.3) Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000456272} |
ENST00000483754 (RP11-432B6.3-001)
|
160227454-160449829 | nonsense_mediated_decay | |
| CIL_0004JQ_0003 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSMUSG00000034349-ENSMUSG00000034317 | CGP | 10090 | 3:69004738-69044755 |
|
| Gene | Transcript | Position | Biotype | |
|
ENSMUSG00000034317 (Trim59) tripartite motif-containing 59 |
ENSMUST00000107802 (Trim59-001)
|
69035288-69044755 | protein_coding | |
|
ENSMUST00000136512 (Trim59-002)
|
69036837-69044715 | protein_coding | ||
|
ENSMUST00000142560 (Trim59-005)
|
69043562-69044715 | retained_intron | ||
|
ENSMUST00000143454 (Trim59-004)
|
69037841-69044715 | protein_coding | ||
|
ENSMUST00000153259 (Trim59-003)
|
69043789-69044723 | processed_transcript | ||
|
ENSMUSG00000034349 (Smc4) structural maintenance of chromosomes 4 |
ENSMUST00000042901 (Smc4-001)
|
69004738-69034623 | protein_coding | |
|
ENSMUST00000107803 (Smc4-004)
|
69004991-69034618 | protein_coding | ||
|
ENSMUST00000124983 (Smc4-006)
|
69016696-69019327 | processed_transcript | ||
|
ENSMUST00000128118 (Smc4-009)
|
69030373-69033083 | retained_intron | ||
|
ENSMUST00000128134 (Smc4-005)
|
69016490-69018173 | retained_intron | ||
|
ENSMUST00000136502 (Smc4-003)
|
69004970-69018108 | protein_coding | ||
|
ENSMUST00000148385 (Smc4-002)
|
69005008-69034623 | nonsense_mediated_decay | ||
|
ENSMUST00000149174 (Smc4-008)
|
69024194-69027900 | processed_transcript | ||
|
ENSMUST00000156354 (Smc4-007)
|
69018915-69021400 | retained_intron | ||
|
ENSMUSG00000065580 (Mir15b) microRNA 15b |
ENSMUST00000083646 (Mir15b-201)
|
69009756-69009853 | miRNA | |
Expression Patterns
|
