C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004JX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000031095-ENSDARG00000031095 CGP 7955 18:39654310-39805917
GeneTranscriptPositionBiotype
ENSDARG00000031095 (veph)
ventricular zone expressed PH domain protein 		ENSDART00000048985 (veph-001) 39654310-39805917 protein_coding
ENSDARG00000068275 (ptx3a)
pentraxin 3, long a 		ENSDART00000098673 (ptx3a-001) 39704748-39715431 protein_coding
CIL_0004JX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000197415-ENSG00000197415 CGP 9606 3:157259742-157533619
GeneTranscriptPositionBiotype
ENSG00000163661 (PTX3)
pentraxin 3, long 		ENST00000295927 (PTX3-001) 157436789-157443628 protein_coding
ENSG00000197415 (VEPH1)
ventricular zone expressed PH domain-containing 1 		ENST00000362010 (VEPH1-001) 157259742-157503427 protein_coding
ENST00000392832 (VEPH1-005) 157260909-157499554 protein_coding
ENST00000392833 (VEPH1-004) 157259742-157503339 protein_coding
ENST00000461299 (VEPH1-007) 157470480-157533616 protein_coding
ENST00000468233 (VEPH1-002) 157459622-157503626 protein_coding
ENST00000469007 (VEPH1-016) 157409669-157428427 processed_transcript
ENST00000472419 (VEPH1-018) 157363293-157364481 retained_intron
ENST00000473907 (VEPH1-010) 157470419-157533608 nonsense_mediated_decay
ENST00000475050 (VEPH1-009) 157470452-157533615 nonsense_mediated_decay
ENST00000479987 (VEPH1-012) 157428322-157533619 protein_coding
ENST00000482434 (VEPH1-013) 157460095-157489356 retained_intron
ENST00000482685 (VEPH1-015) 157381273-157436953 processed_transcript
ENST00000483440 (VEPH1-008) 157489061-157499555 processed_transcript
ENST00000487753 (VEPH1-011) 157460215-157533606 protein_coding
ENST00000488772 (VEPH1-017) 157363692-157381673 processed_transcript
ENST00000489602 (VEPH1-006) 157470502-157533614 protein_coding
ENST00000490235 (VEPH1-014) 157459622-157470529 processed_transcript
ENST00000494677 (VEPH1-003) 157459519-157503574 protein_coding
ENST00000537559 (VEPH1-201) 157459621-157495506 protein_coding
CIL_0004JX_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027831-ENSMUSG00000027831 CGP 10090 3:66053558-66296837
GeneTranscriptPositionBiotype
ENSMUSG00000027831 (Veph1)
ventricular zone expressed PH domain-containing 1 		ENSMUST00000029419 (Veph1-001) 66053558-66296837 protein_coding
ENSMUST00000107837 (Veph1-003) 66056637-66136438 processed_transcript
ENSMUST00000182815 (Veph1-002) 66243998-66296748 retained_intron
ENSMUSG00000027832 (Ptx3)
pentraxin related gene 		ENSMUST00000029421 (Ptx3-001) 66219910-66225805 protein_coding
ENSMUST00000182521 (Ptx3-002) 66220245-66221430 retained_intron
ENSMUSG00000097968 (Tpi-rs2)
triosephosphate isomerase related sequence 2 		ENSMUST00000182471 (Tpi-rs2-001) 66128968-66129723 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004JX_0001ENSDARG00000031095ENSDART00000048985ENSDARG00000068275ENSDART00000098673CIL_0004JX_0002ENSG00000163661ENST00000295927ENSG00000197415ENST00000362010ENST00000392832ENST00000392833ENST00000461299ENST00000468233ENST00000469007ENST00000472419ENST00000473907ENST00000475050ENST00000479987ENST00000482434ENST00000482685ENST00000483440ENST00000487753ENST00000488772ENST00000489602ENST00000490235ENST00000494677ENST00000537559CIL_0004JX_0003ENSMUSG00000027831ENSMUST00000029419ENSMUST00000107837ENSMUST00000182815ENSMUSG00000027832ENSMUST00000029421ENSMUST00000182521ENSMUSG00000097968ENSMUST00000182471
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004JX_0001ENSDARG00000031095ENSDART00000048985ENSDARG00000068275ENSDART00000098673CIL_0004JX_0002ENSG00000163661ENST00000295927ENSG00000197415ENST00000362010ENST00000392832ENST00000392833ENST00000461299ENST00000479987ENST00000482685ENST00000488772CIL_0004JX_0003ENSMUSG00000027831ENSMUST00000029419ENSMUST00000107837ENSMUST00000182815ENSMUSG00000027832ENSMUST00000029421ENSMUST00000182521ENSMUSG00000097968ENSMUST00000182471
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000031095 ENSDART00000048985 N/A N/A N/A 0.754±0.23 N/A N/A 0.149±0.08 0.224±0.00 N/A N/A 0.150±0.00 N/A N/A N/A
ENSDARG00000068275 ENSDART00000098673 N/A N/A N/A 2.361±0.78 N/A N/A 0.897±0.12 1.614±0.52 0.039±0.00 N/A 7.367±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000163661 ENST00000295927 80.792±0.00 2.910±0.00 N/A 0.391±0.30 1.700±0.98 18.354±17.79 0.837±0.75 4.211±0.00 2.658±2.08 15.957±0.00 0.417±0.00 0.950±1.09 4.789±3.23 1.046±0.00
ENSG00000197415 ENST00000362010 N/A N/A 1.544±0.00 N/A N/A N/A N/A 2.141±0.00 N/A 3.338±0.00 N/A 0.095±0.00 0.369±0.21 0.392±0.00
ENST00000392832 N/A N/A 1.985±0.00 N/A N/A N/A N/A 0.020±0.00 N/A 4.998±0.00 N/A 0.144±0.00 N/A N/A
ENST00000392833 N/A N/A 0.882±0.00 N/A 0.084±0.00 N/A 0.011±0.00 N/A 0.114±0.00 N/A N/A 0.034±0.01 N/A N/A
ENST00000461299 N/A N/A N/A N/A N/A 0.547±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469007 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472419 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473907 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475050 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479987 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.996±0.00
ENST00000482434 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482685 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.227±0.00
ENST00000483440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487753 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488772 N/A N/A N/A N/A N/A N/A N/A 0.734±0.00 N/A N/A N/A N/A N/A N/A
ENST00000489602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490235 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494677 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537559 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027831 ENSMUST00000029419 0.076±0.04 0.034±0.02 0.011±0.00 0.664±0.20 0.020±0.00 0.026±0.01 0.034±0.00 3.168±0.99 0.046±0.04 0.301±0.10 0.003±0.00 0.188±0.06 0.095±0.10 0.113±0.03
ENSMUST00000107837 N/A N/A N/A N/A N/A N/A 0.069±0.00 N/A N/A N/A N/A 0.066±0.00 0.191±0.00 0.061±0.00
ENSMUST00000182815 N/A 0.104±0.00 0.015±0.00 N/A N/A N/A N/A N/A 0.027±0.01 N/A N/A 0.207±0.00 N/A N/A
ENSMUSG00000027832 ENSMUST00000029421 1.172±0.04 0.277±0.06 0.389±0.13 4.741±4.11 3.166±2.23 0.173±0.07 0.321±0.10 0.364±0.20 0.065±0.05 0.370±0.21 2.092±0.87 1.828±0.73 0.207±0.24 0.166±0.08
ENSMUST00000182521 0.676±0.27 0.458±0.22 0.138±0.00 0.101±0.00 4.873±1.12 0.308±0.16 0.117±0.03 0.140±0.09 0.035±0.02 0.356±0.00 3.196±0.64 1.037±0.63 0.099±0.06 0.031±0.00
ENSMUSG00000097968 ENSMUST00000182471 N/A N/A N/A 0.018±0.00 N/A N/A N/A 0.103±0.03 0.009±0.00 N/A N/A 0.275±0.00 0.008±0.00 N/A

Loading