C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004K1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000015676-ENSDARG00000091658 CGP 7955 15:1648985-1682410
GeneTranscriptPositionBiotype
ENSDARG00000015676 (nmd3)
NMD3 homolog (S. cerevisiae) 		ENSDART00000021299 (nmd3-001) 1648985-1667667 protein_coding
ENSDART00000149368 (nmd3-002) 1656298-1663424 retained_intron
CIL_0004K1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000169251-ENSG00000196542 CGP 9606 3:161104696-161372880
GeneTranscriptPositionBiotype
ENSG00000169251 (NMD3)
NMD3 ribosome export adaptor 		ENST00000351193 (NMD3-001) 161221290-161252307 protein_coding
ENST00000460469 (NMD3-005) 161221559-161252004 protein_coding
ENST00000460503 (NMD3-011) 161104822-161234836 protein_coding
ENST00000463518 (NMD3-009) 161221324-161238191 protein_coding
ENST00000468606 (NMD3-012) 161104696-161233416 protein_coding
ENST00000472947 (NMD3-002) 161221308-161253532 protein_coding
ENST00000473909 (NMD3-008) 161221288-161234905 retained_intron
ENST00000476237 (NMD3-010) 161221557-161234855 protein_coding
ENST00000478160 (NMD3-013) 161224930-161235331 processed_transcript
ENST00000493066 (NMD3-007) 161221262-161238191 protein_coding
ENSG00000169255 (B3GALNT1)
beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 		ENST00000320474 (B3GALNT1-002) 161083883-161105324 protein_coding
ENST00000392779 (B3GALNT1-001) 161083883-161105370 protein_coding
ENST00000392781 (B3GALNT1-003) 161083897-161105351 protein_coding
ENST00000417187 (B3GALNT1-006) 161084991-161101167 protein_coding
ENST00000460353 (B3GALNT1-014) 161086664-161105303 protein_coding
ENST00000468268 (B3GALNT1-013) 161086422-161105303 protein_coding
ENST00000473142 (B3GALNT1-015) 161086579-161105298 protein_coding
ENST00000473285 (B3GALNT1-005) 161084983-161104549 protein_coding
ENST00000476999 (B3GALNT1-009) 161090005-161105384 processed_transcript
ENST00000478383 (B3GALNT1-017) 161090039-161105267 processed_transcript
ENST00000484127 (B3GALNT1-010) 161086631-161105261 protein_coding
ENST00000488170 (B3GALNT1-004) 161085759-161105140 protein_coding
ENST00000492353 (B3GALNT1-016) 161086559-161105289 protein_coding
ENST00000494173 (B3GALNT1-007) 161086666-161105384 protein_coding
ENST00000494818 (B3GALNT1-011) 161101164-161105305 processed_transcript
ENST00000496295 (B3GALNT1-008) 161086770-161105384 processed_transcript
ENST00000497487 (B3GALNT1-018) 161103142-161105245 processed_transcript
ENST00000498216 (B3GALNT1-012) 161086593-161104950 protein_coding
ENSG00000196542 (SPTSSB)
serine palmitoyltransferase, small subunit B 		ENST00000359175 (SPTSSB-001) 161344792-161372880 protein_coding
ENST00000497137 (SPTSSB-003) 161345775-161371501 protein_coding
ENST00000497374 (SPTSSB-002) 161359299-161371517 retained_intron
ENST00000617024 (SPTSSB-201) 161371530-161372821 protein_coding
ENST00000620149 (SPTSSB-202) 161346093-161346323 protein_coding
ENSG00000240138 (EEF1GP4)
eukaryotic translation elongation factor 1 gamma pseudogene 4 		ENST00000467631 (EEF1GP4-001) 161324913-161326219 processed_pseudogene
ENSG00000243838 (PSMC1P7)
proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 7 		ENST00000495689 (PSMC1P7-001) 161328924-161330238 processed_pseudogene
ENSG00000271052 (RP11-479I16.2)
 ENST00000603703 (RP11-479I16.2-001) 161222911-161223147 processed_pseudogene
CIL_0004K1_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027787-ENSMUSG00000043461 CGP 10090 3:69721985-69859896
GeneTranscriptPositionBiotype
ENSMUSG00000027787 (Nmd3)
NMD3 homolog (S. cerevisiae) 		ENSMUST00000029358 (Nmd3-001) 69721985-69749042 protein_coding
ENSMUST00000127211 (Nmd3-002) 69722090-69731976 retained_intron
ENSMUST00000135266 (Nmd3-005) 69722083-69730533 processed_transcript
ENSMUST00000143041 (Nmd3-003) 69722032-69735089 nonsense_mediated_decay
ENSMUST00000143249 (Nmd3-006) 69722255-69726409 protein_coding
ENSMUST00000149680 (Nmd3-004) 69721985-69724461 retained_intron
ENSMUST00000150210 (Nmd3-007) 69746432-69749042 retained_intron
ENSMUSG00000043461 (Sptssb)
serine palmitoyltransferase, small subunit B 		ENSMUST00000051239 (Sptssb-201) 69819538-69859896 protein_coding
ENSMUST00000171529 (Sptssb-202) 69819538-69859896 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004K1_0001ENSDARG00000015676ENSDART00000021299ENSDART00000149368CIL_0004K1_0002ENSG00000169251ENST00000351193ENST00000460469ENST00000460503ENST00000463518ENST00000468606ENST00000472947ENST00000473909ENST00000476237ENST00000478160ENST00000493066ENSG00000169255ENST00000320474ENST00000392779ENST00000392781ENST00000417187ENST00000460353ENST00000468268ENST00000473142ENST00000473285ENST00000476999ENST00000478383ENST00000484127ENST00000488170ENST00000492353ENST00000494173ENST00000494818ENST00000496295ENST00000497487ENST00000498216ENSG00000196542ENST00000359175ENST00000497137ENST00000497374ENST00000617024ENST00000620149ENSG00000240138ENST00000467631ENSG00000243838ENST00000495689ENSG00000271052ENST00000603703CIL_0004K1_0003ENSMUSG00000027787ENSMUST00000029358ENSMUST00000127211ENSMUST00000135266ENSMUST00000143041ENSMUST00000143249ENSMUST00000149680ENSMUST00000150210ENSMUSG00000043461ENSMUST00000051239ENSMUST00000171529
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004K1_0001ENSDARG00000015676ENSDART00000021299ENSDART00000149368CIL_0004K1_0002ENSG00000169251ENST00000351193ENST00000460469ENST00000472947ENSG00000169255ENST00000320474ENST00000392779ENST00000392781ENSG00000196542ENST00000359175ENST00000497137ENST00000497374ENST00000617024ENSG00000240138ENST00000467631ENSG00000243838ENST00000495689ENSG00000271052ENST00000603703CIL_0004K1_0003ENSMUSG00000027787ENSMUST00000029358ENSMUST00000143249ENSMUST00000149680ENSMUST00000150210ENSMUSG00000043461ENSMUST00000051239ENSMUST00000171529
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000015676 ENSDART00000021299 N/A N/A N/A 9.426±0.63 N/A N/A 9.656±0.60 11.387±0.00 12.734±0.00 N/A 10.386±0.00 N/A N/A N/A
ENSDART00000149368 N/A N/A N/A 3.399±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000169251 ENST00000351193 12.096±0.00 8.603±0.00 1.601±0.00 6.434±1.63 8.567±1.00 7.201±4.80 8.416±2.80 12.864±0.00 7.657±0.41 11.048±1.68 5.441±2.85 9.655±1.11 5.925±2.30 7.792±2.74
ENST00000460469 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.144±0.00 N/A 3.910±0.00
ENST00000460503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472947 N/A N/A N/A N/A N/A N/A N/A 3.016±0.00 N/A N/A N/A N/A N/A N/A
ENST00000473909 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478160 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493066 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000169255 ENST00000320474 N/A N/A 2.120±0.00 4.867±0.58 1.334±0.00 N/A 5.770±2.44 N/A 1.696±0.00 3.326±0.95 N/A 4.620±0.12 2.631±0.00 4.660±0.00
ENST00000392779 N/A 2.246±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000392781 N/A N/A N/A 1.904±0.00 N/A N/A N/A N/A N/A N/A 0.310±0.00 N/A N/A N/A
ENST00000417187 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468268 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473142 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473285 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488170 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494818 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496295 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497487 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498216 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000196542 ENST00000359175 0.014±0.00 0.270±0.00 0.195±0.00 3.001±1.11 0.162±0.04 0.081±0.00 0.045±0.04 0.399±0.00 1.096±1.07 0.047±0.00 N/A 0.109±0.01 0.051±0.04 0.029±0.00
ENST00000497137 N/A 0.122±0.00 N/A N/A 0.254±0.00 N/A N/A 0.600±0.00 1.770±0.00 0.200±0.00 N/A 0.297±0.00 0.222±0.00 0.041±0.00
ENST00000497374 N/A N/A N/A N/A N/A N/A 0.041±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000617024 0.036±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.504±0.00 N/A N/A 0.162±0.00 N/A
ENST00000620149 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000240138 ENST00000467631 0.022±0.00 0.034±0.00 N/A N/A 0.023±0.00 0.021±0.00 0.010±0.00 0.210±0.20 0.020±0.00 N/A 0.029±0.00 N/A N/A 0.217±0.00
ENSG00000243838 ENST00000495689 N/A N/A N/A N/A N/A N/A 0.008±0.00 0.131±0.11 0.105±0.00 0.051±0.00 0.098±0.07 N/A N/A 0.168±0.15
ENSG00000271052 ENST00000603703 N/A N/A 1.857±0.00 N/A N/A N/A 0.772±0.58 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027787 ENSMUST00000029358 4.666±1.46 4.663±1.84 6.623±0.07 5.863±1.71 2.563±0.63 1.986±0.67 2.748±0.23 4.067±0.80 7.431±3.86 3.162±0.51 6.961±0.48 6.290±4.71 23.121±14.74 6.681±3.04
ENSMUST00000127211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135266 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143041 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143249 N/A 14.792±2.07 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.434±0.73
ENSMUST00000149680 7.806±2.76 33.642±10.52 N/A N/A 10.300±2.00 13.560±1.35 4.320±0.44 6.867±1.67 18.779±5.03 9.940±1.80 N/A 21.614±4.89 N/A 9.795±1.25
ENSMUST00000150210 N/A N/A N/A 16.213±0.00 N/A N/A N/A N/A N/A N/A N/A 35.077±0.00 67.797±29.88 15.065±0.00
ENSMUSG00000043461 ENSMUST00000051239 2.459±0.31 0.387±0.21 161.027±62.07 0.076±0.01 0.203±0.00 31.034±13.24 0.035±0.01 3.513±0.48 0.173±0.08 7.715±6.88 N/A 0.139±0.13 0.067±0.04 0.059±0.00
ENSMUST00000171529 N/A N/A 37.436±7.15 0.196±0.00 N/A 4.632±1.04 N/A 0.603±0.21 N/A N/A N/A 0.003±0.00 N/A N/A

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