C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004KJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000061963-ENSDARG00000042390 CGP 7955 20:27778740-27894571
GeneTranscriptPositionBiotype
ENSDARG00000042390 (syndig1l)
synapse differentiation inducing 1-like 		ENSDART00000062154 (syndig1l-201) 27851651-27887283 protein_coding
ENSDART00000153311 (syndig1l-001) 27851651-27894571 protein_coding
ENSDARG00000061963 (vrtn)
vertebrae development homolog (pig) 		ENSDART00000089013 (vrtn-001) 27778740-27784621 protein_coding
ENSDARG00000093696 (si:dkey-1h6.6)
si:dkey-1h6.6 		ENSDART00000143971 (si:dkey-1h6.6-001) 27785078-27811089 lincRNA
CIL_0004KJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000133980-ENSG00000183379 CGP 9606 14:74303069-74426102
GeneTranscriptPositionBiotype
ENSG00000133980 (VRTN)
vertebrae development associated 		ENST00000256362 (VRTN-001) 74348413-74360008 protein_coding
ENST00000557177 (VRTN-002) 74303069-74357033 protein_coding
ENSG00000177776 (RPS2P2)
ribosomal protein S2 pseudogene 2 		ENST00000554490 (RPS2P2-001) 74377818-74378418 processed_pseudogene
ENSG00000258737 (SUB1P2)
SUB1 pseudogene 2 		ENST00000556401 (SUB1P2-001) 74305425-74306063 translated_processed_pseudogene
CIL_0004KJ_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000071235-ENSMUSG00000071234 CGP 10090 12:84641019-84698807
GeneTranscriptPositionBiotype
ENSMUSG00000071234 (Syndig1l)
synapse differentiation inducing 1 like 		ENSMUST00000095550 (Syndig1l-201) 84677278-84698807 protein_coding
ENSMUSG00000071235 (Vrtn)
vertebrae development associated 		ENSMUST00000095551 (Vrtn-201) 84642896-84651455 protein_coding
ENSMUST00000166772 (Vrtn-202) 84641019-84651455 protein_coding
ENSMUST00000167227 (Vrtn-203) 84642555-84651455 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004KJ_0001ENSDARG00000042390ENSDART00000062154ENSDART00000153311ENSDARG00000061963ENSDART00000089013ENSDARG00000093696ENSDART00000143971CIL_0004KJ_0002ENSG00000133980ENST00000256362ENST00000557177ENSG00000177776ENST00000554490ENSG00000258737ENST00000556401CIL_0004KJ_0003ENSMUSG00000071234ENSMUST00000095550ENSMUSG00000071235ENSMUST00000095551ENSMUST00000166772ENSMUST00000167227
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004KJ_0001ENSDARG00000042390ENSDART00000062154ENSDART00000153311ENSDARG00000061963ENSDART00000089013ENSDARG00000093696ENSDART00000143971CIL_0004KJ_0002ENSG00000133980ENST00000256362ENSG00000177776ENST00000554490ENSG00000258737ENST00000556401CIL_0004KJ_0003ENSMUSG00000071234ENSMUST00000095550ENSMUSG00000071235ENSMUST00000095551ENSMUST00000167227
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000042390 ENSDART00000062154 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.075±0.00 N/A N/A N/A
ENSDART00000153311 N/A N/A N/A N/A N/A N/A 0.482±0.01 0.240±0.00 N/A N/A 0.220±0.00 N/A N/A N/A
ENSDARG00000061963 ENSDART00000089013 N/A N/A N/A 0.075±0.03 N/A N/A 0.373±0.19 1.539±0.12 0.131±0.00 N/A 0.022±0.00 N/A N/A N/A
ENSDARG00000093696 ENSDART00000143971 N/A N/A N/A N/A N/A N/A N/A 0.474±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000133980 ENST00000256362 0.025±0.00 0.073±0.00 N/A 0.010±0.00 N/A 0.045±0.00 0.006±0.00 0.057±0.00 0.006±0.00 N/A 0.006±0.00 0.022±0.01 N/A 0.553±0.00
ENST00000557177 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000177776 ENST00000554490 0.039±0.00 0.164±0.00 N/A N/A 0.045±0.00 0.081±0.00 0.037±0.00 0.087±0.00 N/A 0.040±0.00 0.419±0.00 0.056±0.00 N/A 0.106±0.03
ENSG00000258737 ENST00000556401 N/A N/A N/A N/A N/A 0.047±0.00 N/A N/A N/A N/A N/A 0.054±0.00 N/A 0.056±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000071234 ENSMUST00000095550 N/A 0.024±0.01 0.013±0.00 1.796±0.72 0.286±0.11 0.178±0.12 N/A 0.020±0.00 0.042±0.01 0.026±0.01 0.023±0.00 0.037±0.02 0.082±0.06 3.217±1.36
ENSMUSG00000071235 ENSMUST00000095551 N/A N/A N/A 0.009±0.01 N/A N/A N/A N/A 0.002±0.00 N/A N/A 2.422±1.16 N/A 0.121±0.04
ENSMUST00000166772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167227 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.493±0.18 N/A 0.079±0.03

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