C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004MI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000122026-ENSG00000122035 CGP 9606 13:27251309-27273690
GeneTranscriptPositionBiotype
ENSG00000122026 (RPL21)
ribosomal protein L21 		ENST00000272274 (RPL21-003) 27251579-27256568 protein_coding
ENST00000311549 (RPL21-001) 27251309-27256568 protein_coding
ENST00000319826 (RPL21-004) 27251583-27256568 protein_coding
ENST00000326092 (RPL21-005) 27251597-27256568 protein_coding
ENST00000461690 (RPL21-007) 27251561-27256691 nonsense_mediated_decay
ENST00000466550 (RPL21-006) 27253765-27255856 retained_intron
ENST00000473558 (RPL21-002) 27251362-27254467 retained_intron
ENST00000483765 (RPL21-008) 27253765-27256545 nonsense_mediated_decay
ENST00000485756 (RPL21-010) 27254944-27256548 retained_intron
ENST00000493317 (RPL21-009) 27253705-27256307 protein_coding
ENSG00000122035 (RASL11A)
RAS-like, family 11, member A 		ENST00000241463 (RASL11A-001) 27270327-27273690 protein_coding
ENST00000475647 (RASL11A-002) 27271177-27273276 processed_transcript
ENST00000480803 (RASL11A-003) 27271586-27273400 processed_transcript

Homo sapiens Ensembl (GRCh38)

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CIL_0004MI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000041453-ENSMUSG00000029641 CGP 10090 5:146832890-146847726
GeneTranscriptPositionBiotype
ENSMUSG00000029641 (Rasl11a)
RAS-like, family 11, member A 		ENSMUST00000031646 (Rasl11a-201) 146845071-146847726 protein_coding
ENSMUSG00000041453 (Rpl21)
ribosomal protein L21 		ENSMUST00000035983 (Rpl21-001) 146832890-146837032 protein_coding
ENSMUST00000075453 (Rpl21-002) 146833195-146835985 protein_coding
ENSMUST00000099272 (Rpl21-003) 146833202-146835986 protein_coding
ENSMUST00000135345 (Rpl21-006) 146835206-146835986 retained_intron
ENSMUST00000151871 (Rpl21-005) 146834184-146834964 retained_intron
ENSMUST00000154768 (Rpl21-004) 146833146-146834605 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004MI_0001ENSG00000122026ENST00000272274ENST00000311549ENST00000319826ENST00000326092ENST00000461690ENST00000466550ENST00000473558ENST00000483765ENST00000485756ENST00000493317ENSG00000122035ENST00000241463ENST00000475647ENST00000480803CIL_0004MI_0002ENSMUSG00000029641ENSMUST00000031646ENSMUSG00000041453ENSMUST00000035983ENSMUST00000075453ENSMUST00000099272ENSMUST00000135345ENSMUST00000151871ENSMUST00000154768
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004MI_0001ENSG00000122026ENST00000272274ENST00000311549ENST00000319826ENST00000461690ENST00000483765ENSG00000122035ENST00000241463ENST00000475647ENST00000480803CIL_0004MI_0002ENSMUSG00000029641ENSMUST00000031646ENSMUSG00000041453ENSMUST00000035983ENSMUST00000075453ENSMUST00000099272
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000122026 ENST00000272274 N/A N/A 28.168±0.00 88.975±0.00 135.046±0.00 112.676±0.00 47.738±0.71 54.318±23.56 83.698±51.88 91.657±0.00 95.266±0.00 481.038±434.71 502.767±98.24 N/A
ENST00000311549 236.097±0.00 373.720±0.00 N/A 90.493±0.00 197.862±0.00 266.410±0.00 99.638±0.00 139.294±0.00 82.193±0.00 525.742±0.00 202.069±0.00 240.708±64.30 122.704±53.00 109.457±63.93
ENST00000319826 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.319±0.00
ENST00000326092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461690 62.820±0.00 139.457±0.00 5.299±0.00 51.650±0.00 87.341±0.00 201.292±0.00 N/A 27.118±14.27 14.805±0.00 N/A N/A N/A N/A 112.685±0.00
ENST00000466550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473558 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483765 N/A N/A N/A 41.716±0.00 N/A N/A N/A N/A N/A 38.691±0.00 N/A N/A N/A N/A
ENST00000485756 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000122035 ENST00000241463 12.996±0.00 13.197±0.00 2.345±0.00 1.117±0.64 4.013±2.10 9.107±0.00 1.566±1.34 8.551±7.90 2.630±0.54 3.556±2.68 0.846±0.48 8.788±6.82 5.123±3.19 2.229±1.03
ENST00000475647 9.856±0.00 N/A N/A N/A N/A 7.895±0.00 0.790±0.00 N/A N/A N/A N/A N/A N/A 1.838±0.00
ENST00000480803 N/A 11.684±0.00 N/A N/A 2.867±1.53 3.447±0.00 0.555±0.35 9.838±0.00 1.686±0.00 4.587±2.88 1.171±0.00 4.206±0.00 1.522±0.00 1.479±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029641 ENSMUST00000031646 4.303±1.07 4.380±0.73 8.877±2.58 2.147±0.36 2.880±0.92 3.215±0.57 0.930±0.31 8.636±0.59 0.632±0.36 10.665±2.17 0.770±0.28 10.971±3.14 8.819±9.70 0.462±0.22
ENSMUSG00000041453 ENSMUST00000035983 27.768±5.43 2.890±0.88 136.742±0.00 N/A 18.606±4.74 18.687±6.58 16.433±3.47 28.497±1.10 29.610±32.38 25.382±1.16 17.143±4.73 14.696±2.18 N/A 32.272±4.44
ENSMUST00000075453 25.674±12.46 4.973±2.01 214.976±27.02 100.612±80.14 22.087±5.90 24.464±5.27 23.588±4.64 34.403±13.41 91.778±97.42 33.281±7.75 169.383±14.48 276.047±403.54 291.635±171.56 37.433±43.06
ENSMUST00000099272 N/A N/A N/A 16.501±0.18 N/A N/A N/A N/A N/A N/A N/A 5.729±0.00 N/A N/A
ENSMUST00000135345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151871 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154768 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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