C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004OZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000015805-ENSDARG00000004714 CGP 7955 7:53887331-54164943
GeneTranscriptPositionBiotype
ENSDARG00000004714 (tcf12)
transcription factor 12 		ENSDART00000009938 (tcf12-002) 53971789-54013591 protein_coding
ENSDART00000073766 (tcf12-201) 53973676-54164943 protein_coding
ENSDART00000131282 (tcf12-001) 53976381-54164931 protein_coding
ENSDART00000136745 (tcf12-005) 54159811-54164839 protein_coding
ENSDART00000138263 (tcf12-003) 53999925-54013575 protein_coding
ENSDART00000140338 (tcf12-004) 54002236-54002763 processed_transcript

Danio rerio Ensembl (Zv9)

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CIL_0004OZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032232-ENSMUSG00000032228 CGP 10090 9:71626509-72111871
GeneTranscriptPositionBiotype
ENSMUSG00000032228 (Tcf12)
transcription factor 12 		ENSMUST00000034755 (Tcf12-006) 71844268-72111821 protein_coding
ENSMUST00000183404 (Tcf12-001) 71842688-72111847 protein_coding
ENSMUST00000183492 (Tcf12-008) 71883743-72111772 protein_coding
ENSMUST00000183594 (Tcf12-020) 71885215-72111792 nonsense_mediated_decay
ENSMUST00000183647 (Tcf12-016) 71883122-72000474 nonsense_mediated_decay
ENSMUST00000183784 (Tcf12-014) 71868224-71884711 processed_transcript
ENSMUST00000183918 (Tcf12-010) 71844273-71896396 protein_coding
ENSMUST00000183992 (Tcf12-003) 71858587-72111202 protein_coding
ENSMUST00000184029 (Tcf12-012) 71884437-71922710 protein_coding
ENSMUST00000184072 (Tcf12-021) 71875989-72109724 protein_coding
ENSMUST00000184107 (Tcf12-015) 71883764-72111600 nonsense_mediated_decay
ENSMUST00000184196 (Tcf12-002) 71942445-72111847 retained_intron
ENSMUST00000184378 (Tcf12-013) 71875989-71895985 nonsense_mediated_decay
ENSMUST00000184416 (Tcf12-017) 71882732-72000476 nonsense_mediated_decay
ENSMUST00000184448 (Tcf12-011) 71849891-71896089 protein_coding
ENSMUST00000184523 (Tcf12-005) 71849894-72111812 protein_coding
ENSMUST00000184770 (Tcf12-009) 71844252-71896086 retained_intron
ENSMUST00000184783 (Tcf12-019) 71845512-72111871 protein_coding
ENSMUST00000184806 (Tcf12-004) 72106139-72110481 retained_intron
ENSMUST00000184867 (Tcf12-007) 71844277-72111807 nonsense_mediated_decay
ENSMUST00000185117 (Tcf12-018) 71844723-72111651 protein_coding
ENSMUSG00000032232 (Cgnl1)
cingulin-like 1 		ENSMUST00000072899 (Cgnl1-201) 71626509-71771602 protein_coding
ENSMUST00000121322 (Cgnl1-003) 71626509-71771602 protein_coding
ENSMUST00000122065 (Cgnl1-001) 71629211-71771560 protein_coding
ENSMUST00000136044 (Cgnl1-002) 71630338-71631330 retained_intron
ENSMUST00000146567 (Cgnl1-005) 71632633-71648350 processed_transcript
ENSMUST00000152224 (Cgnl1-004) 71628859-71631109 retained_intron
ENSMUSG00000098761 (Gm18821)
predicted gene, 18821 		ENSMUST00000184135 (Gm18821-001) 71908843-71909551 processed_pseudogene
ENSMUSG00000098915 (Rpl15-ps2)
ribosomal protein L15, pseudogene 2 		ENSMUST00000184247 (Rpl15-ps2-001) 72060937-72061549 processed_pseudogene
ENSMUSG00000099313 (Gm27152)
predicted gene 27152 		ENSMUST00000183828 (Gm27152-001) 71948879-71948977 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004OZ_0001ENSDARG00000004714ENSDART00000009938ENSDART00000073766ENSDART00000131282ENSDART00000136745ENSDART00000138263ENSDART00000140338CIL_0004OZ_0002ENSMUSG00000032228ENSMUST00000034755ENSMUST00000183404ENSMUST00000183492ENSMUST00000183594ENSMUST00000183647ENSMUST00000183784ENSMUST00000183918ENSMUST00000183992ENSMUST00000184029ENSMUST00000184072ENSMUST00000184107ENSMUST00000184196ENSMUST00000184378ENSMUST00000184416ENSMUST00000184448ENSMUST00000184523ENSMUST00000184770ENSMUST00000184783ENSMUST00000184806ENSMUST00000184867ENSMUST00000185117ENSMUSG00000032232ENSMUST00000072899ENSMUST00000121322ENSMUST00000122065ENSMUST00000136044ENSMUST00000146567ENSMUST00000152224ENSMUSG00000098761ENSMUST00000184135ENSMUSG00000098915ENSMUST00000184247ENSMUSG00000099313ENSMUST00000183828
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004OZ_0001ENSDARG00000004714ENSDART00000009938ENSDART00000073766ENSDART00000131282ENSDART00000138263CIL_0004OZ_0002ENSMUSG00000032228ENSMUST00000034755ENSMUST00000183404ENSMUST00000183594ENSMUST00000183784ENSMUST00000183918ENSMUST00000183992ENSMUST00000184072ENSMUST00000184378ENSMUST00000184448ENSMUST00000184523ENSMUST00000184770ENSMUST00000184867ENSMUST00000185117ENSMUSG00000032232ENSMUST00000072899ENSMUST00000121322ENSMUST00000122065ENSMUST00000136044ENSMUST00000152224ENSMUSG00000098761ENSMUST00000184135ENSMUSG00000098915ENSMUST00000184247ENSMUSG00000099313ENSMUST00000183828
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000004714 ENSDART00000009938 N/A N/A N/A 8.710±0.00 N/A N/A 6.913±3.52 1.672±0.23 0.299±0.00 N/A 11.167±0.00 N/A N/A N/A
ENSDART00000073766 N/A N/A N/A N/A N/A N/A 4.643±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000131282 N/A N/A N/A 3.459±0.00 N/A N/A N/A N/A 0.094±0.00 N/A N/A N/A N/A N/A
ENSDART00000136745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000138263 N/A N/A N/A N/A N/A N/A N/A N/A 0.202±0.00 N/A N/A N/A N/A N/A
ENSDART00000140338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032228 ENSMUST00000034755 9.819±4.70 6.494±0.93 14.455±1.12 17.905±0.73 13.659±1.80 8.218±0.40 2.772±0.77 5.475±1.72 4.828±2.66 14.573±5.13 2.296±0.37 14.358±4.01 7.482±3.04 1.365±0.00
ENSMUST00000183404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.527±0.03 N/A N/A N/A
ENSMUST00000183492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183594 N/A 12.787±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.425±0.00 22.998±0.00 N/A
ENSMUST00000183647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 44.576±0.00 N/A N/A
ENSMUST00000183918 N/A N/A 5.165±0.00 7.892±0.00 6.666±0.00 N/A N/A N/A N/A N/A N/A 7.005±1.08 N/A N/A
ENSMUST00000183992 9.784±0.62 N/A N/A N/A 15.451±10.34 N/A 5.225±0.00 6.246±0.00 N/A N/A N/A 12.721±2.60 N/A 2.119±0.42
ENSMUST00000184029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184072 N/A 12.417±1.41 N/A N/A N/A N/A N/A N/A 4.664±0.99 N/A N/A N/A N/A 3.927±0.00
ENSMUST00000184107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184196 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184378 N/A 23.388±4.80 N/A N/A 38.878±9.76 23.440±3.10 N/A 21.073±3.56 4.796±0.62 N/A N/A 29.655±3.11 N/A N/A
ENSMUST00000184416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184448 N/A N/A N/A N/A 11.040±1.07 N/A N/A N/A N/A 12.661±0.92 N/A N/A N/A 0.954±0.00
ENSMUST00000184523 8.527±0.83 N/A N/A N/A 7.735±0.00 N/A 3.372±0.00 3.625±0.00 N/A N/A N/A 10.852±1.89 N/A 1.562±0.00
ENSMUST00000184770 N/A N/A N/A 5.009±0.94 N/A N/A N/A N/A 1.206±0.00 N/A N/A 5.458±0.00 N/A 0.995±0.24
ENSMUST00000184783 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184867 N/A 5.664±1.22 N/A 1.419±0.00 5.094±1.07 N/A N/A 3.134±0.00 1.508±0.41 N/A N/A 2.507±0.00 1.963±0.03 N/A
ENSMUST00000185117 7.983±1.31 N/A 6.623±0.83 2.965±0.00 8.394±0.71 2.611±0.00 3.512±0.49 4.467±0.80 2.666±1.00 10.499±0.74 2.121±0.52 14.610±7.30 8.807±2.84 2.093±0.87
ENSMUSG00000032232 ENSMUST00000072899 8.950±3.01 2.218±1.06 3.230±0.66 1.797±0.76 3.595±0.80 2.634±0.21 3.128±0.36 30.971±2.31 3.582±2.43 11.147±0.53 0.691±0.16 6.155±4.85 19.592±8.51 2.384±0.38
ENSMUST00000121322 N/A 3.046±1.01 N/A N/A N/A 1.736±0.22 N/A N/A N/A N/A N/A N/A 17.904±0.00 N/A
ENSMUST00000122065 N/A 1.511±0.31 N/A 3.686±0.00 N/A 0.702±0.00 N/A N/A N/A N/A N/A 33.772±0.00 30.704±17.27 7.756±0.00
ENSMUST00000136044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.856±0.00
ENSMUST00000146567 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152224 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 25.371±6.26
ENSMUSG00000098761 ENSMUST00000184135 0.341±0.00 0.461±0.12 0.209±0.00 0.666±0.42 0.559±0.33 0.511±0.00 0.231±0.00 0.261±0.09 0.189±0.13 0.498±0.28 N/A 0.402±0.22 0.119±0.00 0.188±0.08
ENSMUSG00000098915 ENSMUST00000184247 1.955±2.09 1.253±0.25 0.745±0.04 0.990±0.00 0.712±0.51 4.597±3.95 0.910±0.87 0.526±0.17 0.464±0.10 2.596±0.87 N/A 0.618±0.43 4.791±7.20 0.626±0.55
ENSMUSG00000099313 ENSMUST00000183828 N/A N/A N/A N/A 3279.140±0.00 N/A N/A 3173.535±228.09 N/A N/A N/A N/A N/A N/A

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