C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004SH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000144357-ENSG00000071909 CGP 9606 2:169827458-170655171
GeneTranscriptPositionBiotype
ENSG00000144357 (UBR3)
ubiquitin protein ligase E3 component n-recognin 3 (putative) 		ENST00000272793 (UBR3-001) 169827458-170084131 protein_coding
ENST00000392632 (UBR3-008) 169946310-170084120 protein_coding
ENST00000418381 (UBR3-201) 169827508-170084127 protein_coding
ENST00000430321 (UBR3-003) 169928861-170084131 nonsense_mediated_decay
ENST00000439681 (UBR3-007) 170001373-170082259 protein_coding
ENST00000444475 (UBR3-005) 170008840-170084131 nonsense_mediated_decay
ENST00000465630 (UBR3-006) 170014040-170029435 processed_transcript
ENST00000474426 (UBR3-004) 170014803-170084131 retained_intron
ENST00000477461 (UBR3-009) 169947409-169949892 retained_intron
ENST00000484596 (UBR3-011) 170080024-170081855 retained_intron
ENST00000487689 (UBR3-010) 169949482-169958521 retained_intron
ENSG00000213981 (AC007277.3)
 ENST00000423519 (AC007277.3-002) 170618628-170643944 antisense
ENST00000428156 (AC007277.3-001) 170640374-170695374 antisense
ENSG00000214821 (HMGB1P4)
high mobility group box 1 pseudogene 4 		ENST00000455362 (HMGB1P4-001) 170601662-170602228 processed_pseudogene
ENSG00000227176 (AC092641.2)
 ENST00000440229 (AC092641.2-001) 170077224-170078294 processed_pseudogene
CIL_0004SH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000044308-ENSMUSG00000042064 CGP 10090 2:69897246-70429198
GeneTranscriptPositionBiotype
ENSMUSG00000042064 (Myo3b)
myosin IIIB 		ENSMUST00000060208 (Myo3b-201) 70039126-70429195 protein_coding
ENSMUST00000112241 (Myo3b-001) 70096298-70183267 protein_coding
ENSMUST00000112243 (Myo3b-002) 70083074-70429198 protein_coding
ENSMUSG00000044308 (Ubr3)
ubiquitin protein ligase E3 component n-recognin 3 		ENSMUST00000055758 (Ubr3-001) 69897246-70024013 protein_coding
ENSMUST00000112251 (Ubr3-201) 69897246-70024013 protein_coding
ENSMUST00000123890 (Ubr3-003) 70020512-70022220 processed_transcript
ENSMUST00000125608 (Ubr3-006) 70000509-70009326 processed_transcript
ENSMUST00000126165 (Ubr3-005) 69993712-70022545 processed_transcript
ENSMUST00000131553 (Ubr3-002) 69897303-69938659 protein_coding
ENSMUST00000136543 (Ubr3-008) 70020128-70021186 processed_transcript
ENSMUST00000142563 (Ubr3-004) 69935969-69945301 processed_transcript
ENSMUST00000150301 (Ubr3-007) 70009007-70016465 processed_transcript
ENSMUST00000152610 (Ubr3-009) 69988786-70009188 protein_coding
ENSMUSG00000086132 (Gm13631)
predicted gene 13631 		ENSMUST00000140978 (Gm13631-001) 70038911-70042406 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004SH_0001ENSG00000144357ENST00000272793ENST00000392632ENST00000418381ENST00000430321ENST00000439681ENST00000444475ENST00000465630ENST00000474426ENST00000477461ENST00000484596ENST00000487689ENSG00000213981ENST00000423519ENST00000428156ENSG00000214821ENST00000455362ENSG00000227176ENST00000440229CIL_0004SH_0002ENSMUSG00000042064ENSMUST00000060208ENSMUST00000112241ENSMUST00000112243ENSMUSG00000044308ENSMUST00000055758ENSMUST00000112251ENSMUST00000123890ENSMUST00000125608ENSMUST00000126165ENSMUST00000131553ENSMUST00000136543ENSMUST00000142563ENSMUST00000150301ENSMUST00000152610ENSMUSG00000086132ENSMUST00000140978
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004SH_0001ENSG00000144357ENST00000272793ENST00000392632ENST00000418381ENST00000439681ENST00000444475ENST00000487689ENSG00000213981ENST00000423519ENST00000428156ENSG00000214821ENST00000455362ENSG00000227176ENST00000440229CIL_0004SH_0002ENSMUSG00000042064ENSMUST00000060208ENSMUST00000112241ENSMUST00000112243ENSMUSG00000044308ENSMUST00000055758ENSMUST00000112251ENSMUST00000126165ENSMUST00000131553ENSMUSG00000086132ENSMUST00000140978
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000144357 ENST00000272793 1.772±0.00 N/A N/A N/A N/A N/A N/A 1.350±0.00 N/A N/A N/A N/A 0.924±0.00 2.966±0.00
ENST00000392632 N/A 1.864±0.00 N/A 2.964±0.13 3.539±0.00 3.281±0.00 6.407±0.00 3.171±0.00 2.160±0.00 2.445±0.00 19.572±0.00 1.535±0.31 1.257±0.07 3.296±0.00
ENST00000418381 4.946±0.00 2.824±0.00 2.396±0.00 4.575±2.96 5.124±1.12 3.483±0.00 9.509±5.52 3.596±1.72 4.043±2.88 1.984±0.20 15.228±10.62 2.870±1.12 1.161±0.38 3.341±1.55
ENST00000430321 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439681 N/A N/A 2.499±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444475 N/A 2.184±0.00 N/A N/A N/A N/A N/A 1.488±0.00 0.984±0.00 N/A N/A 3.034±0.00 N/A N/A
ENST00000465630 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474426 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484596 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487689 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.226±0.00 14.219±0.00 24.785±0.00
ENSG00000213981 ENST00000423519 0.092±0.00 0.194±0.00 N/A 0.226±0.19 0.118±0.00 0.084±0.00 0.156±0.00 0.390±0.00 0.919±0.00 0.144±0.02 N/A 0.262±0.19 N/A 0.244±0.06
ENST00000428156 0.076±0.00 0.087±0.00 0.050±0.00 0.097±0.00 0.034±0.00 0.016±0.00 N/A N/A N/A N/A N/A 0.057±0.05 N/A 0.027±0.00
ENSG00000214821 ENST00000455362 0.022±0.00 N/A N/A 0.047±0.00 0.047±0.00 N/A 0.088±0.00 0.048±0.00 N/A N/A 0.043±0.00 0.028±0.00 0.029±0.00 0.076±0.05
ENSG00000227176 ENST00000440229 0.126±0.00 0.260±0.00 0.252±0.00 0.129±0.10 0.126±0.00 0.320±0.31 0.560±0.00 0.068±0.01 N/A 0.183±0.00 N/A 0.073±0.04 0.093±0.00 0.127±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000042064 ENSMUST00000060208 0.002±0.00 0.002±0.00 N/A 0.033±0.00 0.030±0.02 N/A 0.001±0.00 0.596±0.26 0.000±0.00 0.127±0.04 0.003±0.00 0.423±0.26 0.002±0.00 0.487±0.00
ENSMUST00000112241 N/A N/A 0.034±0.00 N/A 0.102±0.00 0.065±0.00 N/A N/A 0.004±0.00 0.117±0.01 N/A 0.568±0.19 0.019±0.00 N/A
ENSMUST00000112243 0.494±0.48 0.024±0.02 0.011±0.00 0.232±0.00 0.046±0.02 N/A 0.004±0.00 0.462±0.08 0.002±0.00 0.163±0.00 0.003±0.00 0.411±0.18 0.017±0.02 0.109±0.08
ENSMUSG00000044308 ENSMUST00000055758 8.422±2.53 8.140±1.04 7.067±0.13 9.672±1.11 7.713±1.97 5.267±1.41 15.535±1.38 8.102±1.55 5.638±2.42 8.340±2.81 31.626±2.40 6.599±1.67 5.226±0.94 1.687±0.82
ENSMUST00000112251 N/A N/A 2.095±0.32 2.783±0.90 N/A N/A N/A N/A 0.854±0.21 N/A 7.692±0.91 N/A 2.354±0.51 N/A
ENSMUST00000123890 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125608 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126165 4.158±0.00 N/A 5.029±0.77 N/A N/A N/A N/A N/A 2.301±0.28 N/A N/A N/A 3.492±0.00 1.812±0.00
ENSMUST00000131553 N/A 30.524±17.80 N/A N/A 7.246±1.77 N/A N/A N/A N/A N/A N/A 8.525±1.95 N/A N/A
ENSMUST00000136543 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150301 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152610 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000086132 ENSMUST00000140978 N/A N/A N/A N/A N/A 0.156±0.06 N/A N/A 0.027±0.00 N/A N/A N/A N/A N/A

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