C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004SI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000138382-ENSG00000144357 CGP 9606 2:169810081-170084131
GeneTranscriptPositionBiotype
ENSG00000138385 (SSB)
Sjogren syndrome antigen B (autoantigen La) 		ENST00000260956 (SSB-001) 169798812-169812064 protein_coding
ENST00000409333 (SSB-003) 169799279-169812064 protein_coding
ENST00000413002 (SSB-006) 169798879-169806890 nonsense_mediated_decay
ENST00000417292 (SSB-005) 169798879-169807030 protein_coding
ENST00000422006 (SSB-004) 169791933-169807071 protein_coding
ENST00000461708 (SSB-007) 169798880-169806007 retained_intron
ENST00000465871 (SSB-010) 169806836-169808666 retained_intron
ENST00000468600 (SSB-008) 169805744-169806978 retained_intron
ENST00000470621 (SSB-013) 169808477-169810602 retained_intron
ENST00000474273 (SSB-009) 169806581-169810411 retained_intron
ENST00000490914 (SSB-011) 169808477-169811044 retained_intron
ENST00000494051 (SSB-012) 169810063-169810888 retained_intron
ENSG00000144357 (UBR3)
ubiquitin protein ligase E3 component n-recognin 3 (putative) 		ENST00000272793 (UBR3-001) 169827458-170084131 protein_coding
ENST00000392632 (UBR3-008) 169946310-170084120 protein_coding
ENST00000418381 (UBR3-201) 169827508-170084127 protein_coding
ENST00000430321 (UBR3-003) 169928861-170084131 nonsense_mediated_decay
ENST00000439681 (UBR3-007) 170001373-170082259 protein_coding
ENST00000444475 (UBR3-005) 170008840-170084131 nonsense_mediated_decay
ENST00000465630 (UBR3-006) 170014040-170029435 processed_transcript
ENST00000474426 (UBR3-004) 170014803-170084131 retained_intron
ENST00000477461 (UBR3-009) 169947409-169949892 retained_intron
ENST00000484596 (UBR3-011) 170080024-170081855 retained_intron
ENST00000487689 (UBR3-010) 169949482-169958521 retained_intron
ENSG00000227176 (AC092641.2)
 ENST00000440229 (AC092641.2-001) 170077224-170078294 processed_pseudogene
CIL_0004SI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000051730-ENSMUSG00000044308 CGP 10090 2:69871198-70024013
GeneTranscriptPositionBiotype
ENSMUSG00000044308 (Ubr3)
ubiquitin protein ligase E3 component n-recognin 3 		ENSMUST00000055758 (Ubr3-001) 69897246-70024013 protein_coding
ENSMUST00000112251 (Ubr3-201) 69897246-70024013 protein_coding
ENSMUST00000123890 (Ubr3-003) 70020512-70022220 processed_transcript
ENSMUST00000125608 (Ubr3-006) 70000509-70009326 processed_transcript
ENSMUST00000126165 (Ubr3-005) 69993712-70022545 processed_transcript
ENSMUST00000131553 (Ubr3-002) 69897303-69938659 protein_coding
ENSMUST00000136543 (Ubr3-008) 70020128-70021186 processed_transcript
ENSMUST00000142563 (Ubr3-004) 69935969-69945301 processed_transcript
ENSMUST00000150301 (Ubr3-007) 70009007-70016465 processed_transcript
ENSMUST00000152610 (Ubr3-009) 69988786-70009188 protein_coding
ENSMUSG00000051730 (Mettl5)
methyltransferase like 5 		ENSMUST00000060447 (Mettl5-001) 69871198-69885615 protein_coding
ENSMUST00000135459 (Mettl5-004) 69871218-69874050 retained_intron
ENSMUST00000135487 (Mettl5-003) 69877748-69885604 retained_intron
ENSMUST00000142127 (Mettl5-002) 69871214-69885597 nonsense_mediated_decay
ENSMUSG00000068882 (Ssb)
Sjogren syndrome antigen B 		ENSMUST00000090852 (Ssb-001) 69861562-69871786 protein_coding
ENSMUST00000112260 (Ssb-003) 69861686-69867552 protein_coding
ENSMUST00000132186 (Ssb-002) 69861623-69871510 nonsense_mediated_decay
ENSMUST00000132603 (Ssb-005) 69868779-69871510 protein_coding
ENSMUST00000156057 (Ssb-004) 69863291-69869150 processed_transcript
ENSMUST00000166411 (Ssb-201) 69861562-69871846 protein_coding
ENSMUSG00000085735 (Mettl5os)
methyltransferase like 5, opposite strand 		ENSMUST00000129114 (Mettl5os-001) 69885728-69888155 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004SI_0001ENSG00000138385ENST00000260956ENST00000409333ENST00000413002ENST00000417292ENST00000422006ENST00000461708ENST00000465871ENST00000468600ENST00000470621ENST00000474273ENST00000490914ENST00000494051ENSG00000144357ENST00000272793ENST00000392632ENST00000418381ENST00000430321ENST00000439681ENST00000444475ENST00000465630ENST00000474426ENST00000477461ENST00000484596ENST00000487689ENSG00000227176ENST00000440229CIL_0004SI_0002ENSMUSG00000044308ENSMUST00000055758ENSMUST00000112251ENSMUST00000123890ENSMUST00000125608ENSMUST00000126165ENSMUST00000131553ENSMUST00000136543ENSMUST00000142563ENSMUST00000150301ENSMUST00000152610ENSMUSG00000051730ENSMUST00000060447ENSMUST00000135459ENSMUST00000135487ENSMUST00000142127ENSMUSG00000068882ENSMUST00000090852ENSMUST00000112260ENSMUST00000132186ENSMUST00000132603ENSMUST00000156057ENSMUST00000166411ENSMUSG00000085735ENSMUST00000129114
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004SI_0001ENSG00000138385ENST00000260956ENST00000461708ENSG00000144357ENST00000272793ENST00000392632ENST00000418381ENST00000439681ENST00000444475ENST00000487689ENSG00000227176ENST00000440229CIL_0004SI_0002ENSMUSG00000044308ENSMUST00000055758ENSMUST00000112251ENSMUST00000126165ENSMUST00000131553ENSMUSG00000051730ENSMUST00000060447ENSMUST00000135487ENSMUST00000142127ENSMUSG00000068882ENSMUST00000090852ENSMUST00000112260ENSMUST00000132186ENSMUST00000132603ENSMUST00000156057ENSMUST00000166411ENSMUSG00000085735ENSMUST00000129114
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138385 ENST00000260956 17.672±0.00 37.731±0.00 3.795±0.00 13.594±2.63 14.031±4.19 14.745±7.58 0.900±0.00 11.164±5.54 5.006±0.50 6.340±1.94 N/A 70.160±67.73 28.182±23.47 35.002±6.67
ENST00000409333 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000413002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417292 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461708 N/A N/A N/A N/A N/A N/A 4.078±0.00 N/A 13.684±0.00 9.501±0.00 N/A N/A N/A N/A
ENST00000465871 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468600 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470621 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000144357 ENST00000272793 1.772±0.00 N/A N/A N/A N/A N/A N/A 1.350±0.00 N/A N/A N/A N/A 0.924±0.00 2.966±0.00
ENST00000392632 N/A 1.864±0.00 N/A 2.964±0.13 3.539±0.00 3.281±0.00 6.407±0.00 3.171±0.00 2.160±0.00 2.445±0.00 19.572±0.00 1.535±0.31 1.257±0.07 3.296±0.00
ENST00000418381 4.946±0.00 2.824±0.00 2.396±0.00 4.575±2.96 5.124±1.12 3.483±0.00 9.509±5.52 3.596±1.72 4.043±2.88 1.984±0.20 15.228±10.62 2.870±1.12 1.161±0.38 3.341±1.55
ENST00000430321 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439681 N/A N/A 2.499±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444475 N/A 2.184±0.00 N/A N/A N/A N/A N/A 1.488±0.00 0.984±0.00 N/A N/A 3.034±0.00 N/A N/A
ENST00000465630 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474426 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484596 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487689 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.226±0.00 14.219±0.00 24.785±0.00
ENSG00000227176 ENST00000440229 0.126±0.00 0.260±0.00 0.252±0.00 0.129±0.10 0.126±0.00 0.320±0.31 0.560±0.00 0.068±0.01 N/A 0.183±0.00 N/A 0.073±0.04 0.093±0.00 0.127±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000044308 ENSMUST00000055758 8.422±2.53 8.140±1.04 7.067±0.13 9.672±1.11 7.713±1.97 5.267±1.41 15.535±1.38 8.102±1.55 5.638±2.42 8.340±2.81 31.626±2.40 6.599±1.67 5.226±0.94 1.687±0.82
ENSMUST00000112251 N/A N/A 2.095±0.32 2.783±0.90 N/A N/A N/A N/A 0.854±0.21 N/A 7.692±0.91 N/A 2.354±0.51 N/A
ENSMUST00000123890 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125608 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126165 4.158±0.00 N/A 5.029±0.77 N/A N/A N/A N/A N/A 2.301±0.28 N/A N/A N/A 3.492±0.00 1.812±0.00
ENSMUST00000131553 N/A 30.524±17.80 N/A N/A 7.246±1.77 N/A N/A N/A N/A N/A N/A 8.525±1.95 N/A N/A
ENSMUST00000136543 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150301 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152610 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000051730 ENSMUST00000060447 2.363±0.00 3.190±0.67 N/A N/A 4.596±0.00 3.992±1.13 2.210±0.31 2.053±0.35 2.230±0.66 2.079±0.00 8.030±0.65 1.344±0.00 N/A N/A
ENSMUST00000135459 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135487 1.266±0.14 1.337±0.00 N/A N/A 1.164±0.31 N/A 0.911±0.53 0.616±0.15 0.735±0.07 1.025±0.35 N/A 0.867±0.43 N/A 0.908±0.19
ENSMUST00000142127 N/A 23.057±2.87 N/A N/A 5.465±1.93 7.836±3.45 2.924±0.19 4.266±1.13 5.678±2.03 3.420±1.50 N/A 8.264±1.88 N/A N/A
ENSMUSG00000068882 ENSMUST00000090852 2.791±0.35 N/A 28.736±1.91 26.224±2.94 N/A 2.311±0.40 2.370±0.58 3.266±1.15 18.102±21.60 3.429±1.60 10.642±2.44 15.007±10.15 18.120±5.47 3.179±0.79
ENSMUST00000112260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 57.960±6.01 47.114±2.30 N/A
ENSMUST00000132186 N/A N/A 18.156±2.20 21.255±8.52 N/A N/A 1.610±0.00 1.956±0.82 21.288±13.74 N/A 4.376±0.80 N/A 23.450±10.58 19.284±0.00
ENSMUST00000132603 N/A N/A N/A 56.302±0.00 N/A N/A N/A N/A 32.004±14.97 N/A 5.825±0.00 78.442±32.80 67.330±59.09 39.884±0.00
ENSMUST00000156057 N/A N/A N/A N/A 4.333±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166411 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.560±0.00 N/A N/A
ENSMUSG00000085735 ENSMUST00000129114 0.406±0.14 0.270±0.00 0.260±0.01 0.354±0.27 0.218±0.11 N/A 0.110±0.04 0.188±0.13 0.253±0.12 0.131±0.02 0.153±0.05 0.367±0.23 0.255±0.27 0.457±0.34

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