C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004SM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000040582-ENSDARG00000020085 CGP 7955 18:32373426-32398337
GeneTranscriptPositionBiotype
ENSDARG00000020085 (slc33a1)
solute carrier family 33 (acetyl-CoA transporter), member 1 		ENSDART00000015079 (slc33a1-001) 32385597-32398337 protein_coding
ENSDART00000122321 (slc33a1-201) 32384324-32393987 protein_coding
ENSDART00000133400 (slc33a1-002) 32393760-32398329 protein_coding
ENSDARG00000040582 (C18H3orf33)
chromosome 3 open reading frame 33 		ENSDART00000059400 (C18H3orf33-001) 32373426-32384184 protein_coding
ENSDART00000141774 (C18H3orf33-002) 32379097-32384211 retained_intron

Danio rerio Ensembl (Zv9)

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CIL_0004SM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000174928-ENSG00000169359 CGP 9606 3:155762617-155854429
GeneTranscriptPositionBiotype
ENSG00000169359 (SLC33A1)
solute carrier family 33 (acetyl-CoA transporter), member 1 		ENST00000359479 (SLC33A1-001) 155826526-155854429 protein_coding
ENST00000392845 (SLC33A1-002) 155821024-155854378 protein_coding
ENST00000460729 (SLC33A1-004) 155844718-155853362 processed_transcript
ENST00000468581 (SLC33A1-005) 155828228-155853317 nonsense_mediated_decay
ENST00000475842 (SLC33A1-003) 155827958-155853491 protein_coding
ENST00000496772 (SLC33A1-006) 155828213-155842605 protein_coding
ENSG00000174928 (C3orf33)
chromosome 3 open reading frame 33 		ENST00000340171 (C3orf33-001) 155762617-155806351 protein_coding
ENST00000465810 (C3orf33-004) 155763528-155806259 nonsense_mediated_decay
ENST00000482061 (C3orf33-002) 155762617-155806266 nonsense_mediated_decay
ENST00000486435 (C3orf33-003) 155763787-155806251 nonsense_mediated_decay
ENST00000534941 (C3orf33-201) 155762618-155806272 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0004SM_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000048581-ENSMUSG00000027822 CGP 10090 3:63914684-63964768
GeneTranscriptPositionBiotype
ENSMUSG00000027822 (Slc33a1)
solute carrier family 33 (acetyl-CoA transporter), member 1 		ENSMUST00000029402 (Slc33a1-001) 63942330-63964768 protein_coding
ENSMUST00000160883 (Slc33a1-003) 63942414-63964372 protein_coding
ENSMUST00000161659 (Slc33a1-002) 63933507-63964666 protein_coding
ENSMUSG00000048581 (E130311K13Rik)
RIKEN cDNA E130311K13 gene 		ENSMUST00000061706 (E130311K13Rik-001) 63914684-63929472 protein_coding
ENSMUST00000160983 (E130311K13Rik-003) 63926817-63929391 retained_intron
ENSMUST00000162448 (E130311K13Rik-002) 63924017-63929391 processed_transcript
ENSMUSG00000097724 (Gm26850)
predicted gene, 26850 		ENSMUST00000181653 (Gm26850-201) 63963633-63968659 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004SM_0001ENSDARG00000020085ENSDART00000015079ENSDART00000122321ENSDART00000133400ENSDARG00000040582ENSDART00000059400ENSDART00000141774CIL_0004SM_0002ENSG00000169359ENST00000359479ENST00000392845ENST00000460729ENST00000468581ENST00000475842ENST00000496772ENSG00000174928ENST00000340171ENST00000465810ENST00000482061ENST00000486435ENST00000534941CIL_0004SM_0003ENSMUSG00000027822ENSMUST00000029402ENSMUST00000160883ENSMUST00000161659ENSMUSG00000048581ENSMUST00000061706ENSMUST00000160983ENSMUST00000162448ENSMUSG00000097724ENSMUST00000181653
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004SM_0001ENSDARG00000020085ENSDART00000015079ENSDART00000122321ENSDARG00000040582ENSDART00000059400CIL_0004SM_0002ENSG00000169359ENST00000359479ENST00000392845ENST00000475842ENSG00000174928ENST00000340171ENST00000465810ENST00000482061ENST00000486435ENST00000534941CIL_0004SM_0003ENSMUSG00000027822ENSMUST00000029402ENSMUST00000160883ENSMUSG00000048581ENSMUST00000061706ENSMUST00000160983ENSMUST00000162448ENSMUSG00000097724ENSMUST00000181653
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000020085 ENSDART00000015079 N/A N/A N/A 2.344±0.42 N/A N/A 1.788±0.18 4.608±0.00 2.054±0.00 N/A N/A N/A N/A N/A
ENSDART00000122321 N/A N/A N/A 0.824±0.16 N/A N/A 0.207±0.00 0.867±0.15 1.122±0.00 N/A N/A N/A N/A N/A
ENSDART00000133400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000040582 ENSDART00000059400 N/A N/A N/A 1.717±0.64 N/A N/A 0.843±0.40 1.152±0.21 0.037±0.00 N/A 0.149±0.00 N/A N/A N/A
ENSDART00000141774 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000169359 ENST00000359479 4.121±0.00 2.315±0.00 3.555±0.00 1.336±0.44 2.968±0.46 3.216±0.82 2.857±0.07 6.295±2.19 4.103±2.60 3.078±0.03 1.115±0.46 3.957±0.32 3.971±0.54 4.312±1.04
ENST00000392845 N/A 0.613±0.00 N/A 1.110±0.33 0.737±0.00 0.978±0.00 0.846±0.00 4.433±0.00 2.771±0.00 N/A N/A 1.888±0.02 0.443±0.00 2.214±0.00
ENST00000460729 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468581 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475842 N/A N/A N/A 2.319±0.00 2.380±0.00 N/A N/A 5.667±0.00 1.882±0.00 4.618±0.00 N/A 2.635±0.00 N/A N/A
ENST00000496772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000174928 ENST00000340171 N/A N/A N/A 0.955±0.00 N/A N/A N/A N/A 0.194±0.00 N/A N/A 0.566±0.04 N/A 2.502±1.14
ENST00000465810 N/A N/A 1.977±0.00 0.688±0.00 0.286±0.00 0.351±0.00 N/A 0.162±0.00 0.458±0.00 0.381±0.00 0.401±0.00 0.213±0.00 0.217±0.00 N/A
ENST00000482061 N/A N/A N/A N/A N/A N/A N/A N/A 0.256±0.00 N/A N/A N/A N/A N/A
ENST00000486435 N/A N/A N/A N/A N/A N/A N/A N/A 0.119±0.00 N/A N/A 0.742±0.00 N/A 3.928±0.00
ENST00000534941 0.446±0.00 0.606±0.00 N/A 0.930±0.00 0.675±0.28 0.465±0.04 0.961±0.61 2.101±0.00 0.551±0.00 0.635±0.00 0.810±0.00 0.934±0.57 0.779±0.35 1.480±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027822 ENSMUST00000029402 1.081±0.04 N/A 5.707±0.00 2.635±1.44 1.119±0.00 N/A 0.960±0.13 5.820±1.38 4.095±1.70 1.142±0.06 1.587±0.24 6.681±3.68 4.081±2.21 0.377±0.00
ENSMUST00000160883 3.782±0.91 N/A 4.648±0.00 2.308±0.11 3.476±0.51 4.038±0.43 1.236±0.32 10.738±2.50 7.421±2.14 3.319±0.49 0.460±0.00 4.057±0.50 1.455±0.11 5.824±2.48
ENSMUST00000161659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000048581 ENSMUST00000061706 2.141±0.10 1.133±0.48 3.054±0.28 2.049±0.98 1.260±0.32 0.669±0.22 1.508±0.39 2.188±0.41 1.291±0.30 1.110±0.23 1.450±0.34 2.592±1.94 3.347±1.44 1.092±0.28
ENSMUST00000160983 N/A 3.961±2.04 N/A N/A N/A N/A N/A N/A N/A 0.525±0.00 N/A 3.314±0.00 N/A N/A
ENSMUST00000162448 1.268±0.37 8.172±1.43 N/A N/A 2.783±1.01 1.834±0.94 N/A 1.725±0.98 3.945±0.91 1.844±1.05 N/A 8.381±4.08 N/A 0.364±0.00
ENSMUSG00000097724 ENSMUST00000181653 4.994±1.01 28.109±1.74 3.212±0.00 1.051±0.43 10.067±5.86 16.073±1.92 1.566±0.18 15.229±4.10 8.873±5.59 6.873±1.44 0.433±0.11 11.861±6.05 1.555±0.81 5.128±3.33

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