C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004TT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000165409-ENSG00000165417 CGP 9606 14:80954989-81221377
GeneTranscriptPositionBiotype
ENSG00000100629 (CEP128)
centrosomal protein 128kDa 		ENST00000216517 (CEP128-004) 80830165-80941687 protein_coding
ENST00000281129 (CEP128-201) 80496474-80939540 protein_coding
ENST00000553717 (CEP128-013) 80497497-80531000 processed_transcript
ENST00000554298 (CEP128-003) 80905471-80941701 retained_intron
ENST00000554368 (CEP128-007) 80945556-80959517 processed_transcript
ENST00000554502 (CEP128-006) 80476983-80836336 nonsense_mediated_decay
ENST00000554728 (CEP128-012) 80742755-80761592 protein_coding
ENST00000554827 (CEP128-005) 80830165-80904928 protein_coding
ENST00000555265 (CEP128-001) 80496478-80941785 protein_coding
ENST00000555529 (CEP128-002) 80899973-80959484 protein_coding
ENST00000556042 (CEP128-010) 80904910-80959501 protein_coding
ENST00000556061 (CEP128-015) 80490479-80580425 protein_coding
ENST00000556800 (CEP128-008) 80957798-80959506 retained_intron
ENST00000556981 (CEP128-009) 80916452-80959504 protein_coding
ENST00000557377 (CEP128-014) 80526684-80530960 retained_intron
ENST00000557411 (CEP128-011) 80914316-80941719 protein_coding
ENSG00000165409 (TSHR)
thyroid stimulating hormone receptor 		ENST00000298171 (TSHR-201) 80955525-81146302 protein_coding
ENST00000342443 (TSHR-003) 80955431-81108950 protein_coding
ENST00000541158 (TSHR-001) 80955043-81146302 protein_coding
ENST00000553763 (TSHR-007) 80955581-81068473 retained_intron
ENST00000554263 (TSHR-004) 80955655-81108918 protein_coding
ENST00000554435 (TSHR-005) 80955655-81108919 protein_coding
ENST00000555326 (TSHR-008) 80955629-81091132 nonsense_mediated_decay
ENST00000556031 (TSHR-009) 81108349-81108840 retained_intron
ENST00000557096 (TSHR-006) 80954989-80955937 processed_transcript
ENSG00000165417 (GTF2A1)
general transcription factor IIA, 1, 19/37kDa 		ENST00000298173 (GTF2A1-004) 81180178-81220952 nonsense_mediated_decay
ENST00000434192 (GTF2A1-003) 81180209-81221231 protein_coding
ENST00000553612 (GTF2A1-001) 81175452-81220922 protein_coding
ENST00000556268 (GTF2A1-002) 81197227-81221377 retained_intron
ENSG00000221303 (SNORA79)
small nucleolar RNA, H/ACA box 79 		ENST00000408376 (SNORA79-201) 81202695-81202834 snoRNA
ENSG00000258915 (RP11-114N19.2)
 ENST00000553845 (RP11-114N19.2-001) 80981988-80983638 processed_pseudogene
ENSG00000258999 (RP11-114N19.3)
 ENST00000557775 (RP11-114N19.3-001) 81107033-81170414 antisense
ENSG00000259167 (NMNAT1P1)
NMNAT1 pseudogene 1 		ENST00000554095 (NMNAT1P1-001) 81032529-81033404 processed_pseudogene
ENSG00000271656 (RP11-114N19.5)
 ENST00000604099 (RP11-114N19.5-001) 81003325-81003645 processed_pseudogene
ENSG00000271705 (RPL17P3)
ribosomal protein L17 pseudogene 3 		ENST00000605695 (RPL17P3-001) 81001166-81001786 unprocessed_pseudogene
ENSG00000273941 (AL136040.1)
 ENST00000617646 (AL136040.1-201) 81195040-81195148 miRNA
CIL_0004TT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020963-ENSMUSG00000020962 CGP 10090 12:91400994-91590487
GeneTranscriptPositionBiotype
ENSMUSG00000020962 (Gtf2a1)
general transcription factor II A, 1 		ENSMUST00000021345 (Gtf2a1-001) 91555916-91590009 protein_coding
ENSMUST00000063314 (Gtf2a1-002) 91558688-91590487 protein_coding
ENSMUST00000163693 (Gtf2a1-003) 91586625-91589639 retained_intron
ENSMUSG00000020963 (Tshr)
thyroid stimulating hormone receptor 		ENSMUST00000021343 (Tshr-002) 91401000-91522541 protein_coding
ENSMUST00000021346 (Tshr-001) 91400994-91540509 protein_coding
ENSMUST00000186437 (Tshr-003) 91538066-91539556 protein_coding
ENSMUSG00000080365 (Gm25776)
predicted gene, 25776 		ENSMUST00000116715 (Gm25776-201) 91573430-91573572 snoRNA
ENSMUSG00000099750 (RP23-152C21.5)
predicted gene, 18827 		ENSMUST00000188341 (RP23-152C21.5-001) 91482053-91482842 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004TT_0001ENSG00000100629ENST00000216517ENST00000281129ENST00000553717ENST00000554298ENST00000554368ENST00000554502ENST00000554728ENST00000554827ENST00000555265ENST00000555529ENST00000556042ENST00000556061ENST00000556800ENST00000556981ENST00000557377ENST00000557411ENSG00000165409ENST00000298171ENST00000342443ENST00000541158ENST00000553763ENST00000554263ENST00000554435ENST00000555326ENST00000556031ENST00000557096ENSG00000165417ENST00000298173ENST00000434192ENST00000553612ENST00000556268ENSG00000221303ENST00000408376ENSG00000258915ENST00000553845ENSG00000258999ENST00000557775ENSG00000259167ENST00000554095ENSG00000271656ENST00000604099ENSG00000271705ENST00000605695ENSG00000273941ENST00000617646CIL_0004TT_0002ENSMUSG00000020962ENSMUST00000021345ENSMUST00000063314ENSMUST00000163693ENSMUSG00000020963ENSMUST00000021343ENSMUST00000021346ENSMUST00000186437ENSMUSG00000080365ENSMUST00000116715ENSMUSG00000099750ENSMUST00000188341
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004TT_0001ENSG00000100629ENST00000216517ENST00000281129ENST00000554502ENST00000554728ENST00000555265ENST00000556061ENST00000557411ENSG00000165409ENST00000298171ENST00000342443ENST00000541158ENST00000553763ENST00000554263ENST00000554435ENST00000556031ENST00000557096ENSG00000165417ENST00000298173ENST00000434192ENST00000553612ENSG00000221303ENST00000408376ENSG00000258915ENST00000553845ENSG00000258999ENST00000557775ENSG00000259167ENST00000554095ENSG00000271656ENST00000604099ENSG00000271705ENST00000605695ENSG00000273941ENST00000617646CIL_0004TT_0002ENSMUSG00000020962ENSMUST00000021345ENSMUST00000063314ENSMUST00000163693ENSMUSG00000020963ENSMUST00000021343ENSMUST00000021346ENSMUST00000186437ENSMUSG00000080365ENSMUST00000116715ENSMUSG00000099750ENSMUST00000188341
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100629 ENST00000216517 0.283±0.00 N/A N/A N/A N/A N/A N/A 0.165±0.00 0.577±0.00 N/A N/A 0.346±0.00 0.159±0.00 2.094±0.00
ENST00000281129 0.188±0.00 0.183±0.00 0.144±0.00 0.176±0.05 0.438±0.00 0.557±0.00 N/A 0.140±0.00 0.054±0.00 N/A 0.180±0.00 0.289±0.18 0.204±0.01 0.492±0.00
ENST00000553717 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554368 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554502 0.156±0.00 0.605±0.00 N/A 0.190±0.00 0.254±0.00 0.169±0.00 0.099±0.04 N/A N/A N/A 0.244±0.00 0.197±0.03 0.140±0.06 0.535±0.06
ENST00000554728 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.174±0.00 N/A N/A N/A
ENST00000554827 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555265 N/A N/A 0.219±0.00 N/A N/A N/A 0.191±0.00 N/A N/A 0.448±0.15 N/A 0.317±0.07 0.122±0.00 0.920±0.00
ENST00000555529 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556042 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556061 N/A N/A N/A N/A N/A N/A N/A N/A 0.053±0.00 N/A 0.429±0.00 1.206±0.00 N/A N/A
ENST00000556800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557377 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557411 N/A N/A N/A N/A N/A N/A N/A 1.011±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000165409 ENST00000298171 0.076±0.00 N/A 0.310±0.00 0.111±0.05 0.037±0.00 0.552±0.00 0.100±0.08 0.040±0.00 0.367±0.28 0.606±0.00 0.010±0.00 0.084±0.03 0.012±0.00 0.026±0.00
ENST00000342443 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.041±0.00 N/A N/A
ENST00000541158 N/A 0.031±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553763 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.204±0.00
ENST00000554263 N/A N/A N/A N/A N/A N/A 0.151±0.00 N/A N/A N/A N/A 0.051±0.00 0.028±0.00 N/A
ENST00000554435 N/A N/A N/A 0.310±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555326 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556031 N/A N/A N/A 1.303±0.00 N/A 0.125±0.00 N/A N/A N/A N/A N/A N/A N/A 0.318±0.00
ENST00000557096 N/A 0.111±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000165417 ENST00000298173 N/A N/A 1.027±0.00 N/A N/A N/A N/A N/A 2.188±0.00 N/A N/A N/A N/A 4.100±0.00
ENST00000434192 N/A N/A N/A N/A 3.084±0.00 N/A N/A N/A N/A N/A N/A N/A 2.046±0.00 7.898±0.00
ENST00000553612 8.794±0.00 2.495±0.00 2.270±0.00 6.107±1.13 3.853±0.45 2.380±0.06 1.969±0.48 3.010±0.22 3.573±1.18 3.121±0.83 7.264±0.00 3.042±1.59 2.908±0.94 7.428±0.66
ENST00000556268 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000221303 ENST00000408376 N/A N/A N/A 7.579±0.00 7.875±0.00 30.381±0.00 24.858±0.00 N/A 27.381±0.00 N/A N/A N/A N/A N/A
ENSG00000258915 ENST00000553845 N/A N/A N/A 0.020±0.00 N/A 0.135±0.00 N/A N/A 0.006±0.00 N/A N/A N/A N/A 0.015±0.00
ENSG00000258999 ENST00000557775 N/A 0.136±0.00 0.109±0.00 0.220±0.08 0.071±0.00 1.019±0.44 0.032±0.00 0.476±0.41 0.743±0.06 N/A N/A 0.159±0.03 0.130±0.00 0.194±0.16
ENSG00000259167 ENST00000554095 N/A N/A 0.153±0.00 N/A 0.125±0.00 N/A N/A 0.244±0.00 N/A 0.183±0.00 N/A 0.033±0.00 N/A 0.021±0.00
ENSG00000271656 ENST00000604099 N/A N/A N/A 0.287±0.00 0.367±0.00 N/A N/A N/A 1.323±0.91 N/A N/A N/A N/A N/A
ENSG00000271705 ENST00000605695 N/A N/A N/A N/A N/A 0.093±0.00 N/A N/A N/A 0.428±0.00 N/A N/A N/A N/A
ENSG00000273941 ENST00000617646 0.257±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 34.764±0.00 N/A 0.541±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020962 ENSMUST00000021345 7.396±3.41 7.039±0.75 3.262±0.26 5.441±2.95 6.000±2.30 5.130±1.49 3.845±0.67 8.092±0.54 4.854±1.51 11.118±0.42 0.567±0.24 13.128±7.12 3.693±1.78 6.449±2.59
ENSMUST00000063314 N/A 6.884±1.81 N/A N/A 4.015±0.52 3.096±0.54 N/A N/A 1.856±0.33 N/A N/A 8.894±4.20 3.885±0.00 6.066±3.32
ENSMUST00000163693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 102.100±0.00 N/A
ENSMUSG00000020963 ENSMUST00000021343 N/A 2.700±0.97 0.119±0.00 N/A 16.924±2.06 0.359±0.21 0.053±0.01 1.084±0.00 0.015±0.01 0.623±0.16 N/A N/A 0.016±0.00 N/A
ENSMUST00000021346 29.376±13.76 2.761±0.52 0.105±0.04 0.083±0.02 12.912±1.83 0.156±0.09 0.145±0.07 0.646±0.29 0.013±0.01 0.519±0.04 0.096±0.10 4.335±1.33 0.059±0.07 0.843±0.38
ENSMUST00000186437 N/A N/A N/A N/A N/A 0.549±0.00 N/A N/A 0.062±0.02 N/A 0.247±0.04 N/A N/A 0.789±0.00
ENSMUSG00000080365 ENSMUST00000116715 N/A N/A N/A N/A N/A N/A N/A N/A 3.843±1.36 N/A 4.162±0.34 9.219±3.35 9.784±3.21 N/A
ENSMUSG00000099750 ENSMUST00000188341 0.238±0.02 N/A 0.012±0.00 N/A 0.201±0.15 N/A N/A N/A N/A 0.062±0.00 N/A 0.117±0.04 0.007±0.00 N/A

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