C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004VF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000041431-ENSDARG00000062721 CGP 7955 18:18786774-18875881
GeneTranscriptPositionBiotype
ENSDARG00000041431 (slc24a1)
solute carrier family 24 (sodium/potassium/calcium exchanger), member 1 		ENSDART00000060735 (slc24a1-201) 18789421-18822315 protein_coding
ENSDART00000135729 (slc24a1-001) 18786774-18820671 protein_coding
ENSDARG00000062721 (dennd4a)
DENN/MADD domain containing 4A 		ENSDART00000090922 (dennd4a-201) 18825584-18875881 protein_coding
ENSDART00000090962 (dennd4a-001) 18825550-18875852 protein_coding
ENSDART00000129591 (dennd4a-202) 18822325-18875852 protein_coding
ENSDARG00000096256 (si:ch211-117i10.10)
si:ch211-117i10.10 		ENSDART00000151085 (si:ch211-117i10.10-001) 18806700-18813924 sense_intronic
CIL_0004VF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000074621-ENSG00000174485 CGP 9606 15:65611366-65792293
GeneTranscriptPositionBiotype
ENSG00000074621 (SLC24A1)
solute carrier family 24 (sodium/potassium/calcium exchanger), member 1 		ENST00000261892 (SLC24A1-001) 65621932-65656260 protein_coding
ENST00000339868 (SLC24A1-201) 65621932-65656260 protein_coding
ENST00000399033 (SLC24A1-004) 65623999-65654110 protein_coding
ENST00000425561 (SLC24A1-008) 65611378-65625857 processed_transcript
ENST00000434116 (SLC24A1-003) 65611366-65652929 retained_intron
ENST00000449142 (SLC24A1-006) 65642905-65654191 processed_transcript
ENST00000505666 (SLC24A1-011) 65652739-65655513 protein_coding
ENST00000535950 (SLC24A1-009) 65611812-65624018 processed_transcript
ENST00000537259 (SLC24A1-002) 65611405-65660995 protein_coding
ENST00000539516 (SLC24A1-010) 65643928-65650608 retained_intron
ENST00000544319 (SLC24A1-007) 65622009-65654080 protein_coding
ENST00000546330 (SLC24A1-005) 65624081-65654079 protein_coding
ENSG00000103769 (RAB11A)
RAB11A, member RAS oncogene family 		ENST00000261890 (RAB11A-001) 65869458-65891991 protein_coding
ENST00000563580 (RAB11A-007) 65792447-65859751 processed_transcript
ENST00000564910 (RAB11A-002) 65869456-65888247 protein_coding
ENST00000565075 (RAB11A-004) 65869491-65887859 protein_coding
ENST00000566233 (RAB11A-009) 65869464-65887736 protein_coding
ENST00000567671 (RAB11A-005) 65870013-65887791 protein_coding
ENST00000568850 (RAB11A-006) 65792447-65877819 processed_transcript
ENST00000569304 (RAB11A-008) 65726054-65887923 processed_transcript
ENST00000569896 (RAB11A-003) 65869541-65888635 protein_coding
ENSG00000174485 (DENND4A)
DENN/MADD domain containing 4A 		ENST00000431932 (DENND4A-003) 65661777-65792124 protein_coding
ENST00000443035 (DENND4A-001) 65659123-65792124 protein_coding
ENST00000561863 (DENND4A-009) 65658046-65661929 protein_coding
ENST00000562028 (DENND4A-006) 65696316-65701801 retained_intron
ENST00000562540 (DENND4A-008) 65661821-65664956 retained_intron
ENST00000564674 (DENND4A-005) 65691458-65792293 protein_coding
ENST00000567323 (DENND4A-007) 65680635-65690538 processed_transcript
ENST00000568515 (DENND4A-004) 65715075-65792207 retained_intron
ENSG00000238311 (snoU13)
Small nucleolar RNA U13 		ENST00000459325 (snoU13.1-202) 65696833-65696936 snoRNA
ENSG00000259924 (RP11-16E23.4)
 ENST00000567680 (RP11-16E23.4-001) 65771176-65772139 processed_pseudogene
ENSG00000261544 (RP11-16E23.3)
 ENST00000567396 (RP11-16E23.3-001) 65766460-65767398 sense_intronic

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004VF_0001ENSDARG00000041431ENSDART00000060735ENSDART00000135729ENSDARG00000062721ENSDART00000090922ENSDART00000090962ENSDART00000129591ENSDARG00000096256ENSDART00000151085CIL_0004VF_0002ENSG00000074621ENST00000261892ENST00000339868ENST00000399033ENST00000425561ENST00000434116ENST00000449142ENST00000505666ENST00000535950ENST00000537259ENST00000539516ENST00000544319ENST00000546330ENSG00000103769ENST00000261890ENST00000563580ENST00000564910ENST00000565075ENST00000566233ENST00000567671ENST00000568850ENST00000569304ENST00000569896ENSG00000174485ENST00000431932ENST00000443035ENST00000561863ENST00000562028ENST00000562540ENST00000564674ENST00000567323ENST00000568515ENSG00000238311ENST00000459325ENSG00000259924ENST00000567680ENSG00000261544ENST00000567396
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004VF_0001ENSDARG00000041431ENSDART00000060735ENSDART00000135729ENSDARG00000062721ENSDART00000090922ENSDART00000129591ENSDARG00000096256ENSDART00000151085CIL_0004VF_0002ENSG00000074621ENST00000261892ENST00000339868ENST00000434116ENSG00000103769ENST00000261890ENST00000564910ENST00000565075ENST00000566233ENST00000567671ENST00000569896ENSG00000174485ENST00000431932ENST00000443035ENST00000564674ENST00000568515ENSG00000238311ENST00000459325ENSG00000259924ENST00000567680ENSG00000261544ENST00000567396
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000041431 ENSDART00000060735 N/A N/A N/A 0.915±0.01 N/A N/A 0.207±0.09 0.107±0.00 0.034±0.00 N/A 0.216±0.00 N/A N/A N/A
ENSDART00000135729 N/A N/A N/A 0.194±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000062721 ENSDART00000090922 N/A N/A N/A N/A N/A N/A 3.522±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000090962 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000129591 N/A N/A N/A 11.734±0.00 N/A N/A 6.331±6.60 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000096256 ENSDART00000151085 N/A N/A N/A 4.093±2.63 N/A N/A 2.048±1.31 4.518±1.94 N/A N/A 0.267±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000074621 ENST00000261892 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.406±0.03 1.454±0.00 2.331±0.00
ENST00000339868 N/A N/A 0.755±0.00 N/A 1.051±0.00 N/A N/A N/A N/A N/A N/A N/A 0.833±0.00 N/A
ENST00000399033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000425561 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434116 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.984±0.00
ENST00000449142 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505666 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535950 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537259 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544319 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546330 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000103769 ENST00000261890 12.659±0.00 13.829±0.00 3.554±0.00 16.357±0.46 5.151±0.86 9.014±0.46 4.496±0.63 2.344±0.00 5.666±3.19 9.173±1.00 3.777±0.00 11.017±1.71 8.296±1.63 9.324±3.63
ENST00000563580 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564910 29.400±0.00 19.302±0.00 N/A 26.369±0.00 12.366±0.00 16.336±0.00 7.539±0.00 16.834±0.00 6.434±0.00 N/A 7.146±1.78 23.520±5.60 39.631±5.04 35.719±0.00
ENST00000565075 N/A N/A N/A N/A N/A N/A N/A N/A 8.746±0.00 N/A N/A N/A 25.095±2.94 33.653±0.00
ENST00000566233 N/A N/A N/A N/A 14.075±0.00 N/A 6.715±0.00 12.097±0.00 N/A N/A 7.421±0.00 N/A N/A N/A
ENST00000567671 N/A 39.296±0.00 N/A N/A 26.627±0.00 N/A 18.079±0.00 37.912±0.00 12.506±0.00 55.296±0.00 11.496±0.00 93.216±69.52 57.267±39.40 108.183±34.01
ENST00000568850 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569304 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569896 N/A N/A N/A 9.708±0.00 7.295±0.00 10.347±1.15 8.748±0.00 8.940±5.08 6.014±0.00 15.418±1.25 5.022±0.00 22.716±13.80 16.374±7.37 23.315±0.00
ENSG00000174485 ENST00000431932 1.962±0.00 1.635±0.00 1.399±0.00 3.330±1.56 1.251±0.00 2.769±0.00 0.893±0.23 1.451±0.14 2.060±0.71 5.317±3.13 0.693±0.00 1.947±0.99 0.861±0.14 1.889±0.07
ENST00000443035 1.649±0.00 1.582±0.00 0.895±0.00 1.901±0.31 0.984±0.00 1.685±0.00 0.466±0.12 1.563±0.37 1.459±0.16 2.887±0.48 1.391±0.88 1.265±0.47 N/A 2.389±1.06
ENST00000561863 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562540 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564674 N/A N/A 1.779±0.00 N/A N/A 2.353±0.00 N/A 1.769±0.00 N/A N/A N/A N/A N/A N/A
ENST00000567323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568515 N/A N/A N/A 7.339±0.00 N/A N/A 1.590±0.00 N/A 3.888±0.00 N/A N/A N/A N/A N/A
ENSG00000238311 ENST00000459325 N/A 2.128±0.00 N/A N/A N/A N/A 0.478±0.00 377.524±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000259924 ENST00000567680 0.068±0.00 0.432±0.00 1.142±0.00 0.613±0.26 1.756±1.53 0.900±0.89 0.762±0.00 1.296±1.21 1.725±1.65 1.818±1.61 0.093±0.06 0.991±1.55 0.084±0.05 0.190±0.04
ENSG00000261544 ENST00000567396 0.027±0.00 0.185±0.00 N/A 0.328±0.09 2.038±1.86 1.120±0.93 0.072±0.00 0.025±0.00 0.521±0.00 N/A N/A 1.985±1.90 N/A N/A

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