C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004W1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000186340-ENSG00000184465 CGP 9606 6:169215780-169702048
GeneTranscriptPositionBiotype
ENSG00000184465 (WDR27)
WD repeat domain 27 		ENST00000423258 (WDR27-014) 169457355-169701586 protein_coding
ENST00000441385 (WDR27-002) 169647648-169660692 protein_coding
ENST00000448612 (WDR27-010) 169457212-169701653 protein_coding
ENST00000464249 (WDR27-007) 169668607-169670700 processed_transcript
ENST00000467418 (WDR27-003) 169657759-169663723 processed_transcript
ENST00000474018 (WDR27-009) 169672322-169702048 protein_coding
ENST00000476322 (WDR27-004) 169664177-169665092 retained_intron
ENST00000479310 (WDR27-001) 169457212-169649233 processed_transcript
ENST00000486490 (WDR27-005) 169662367-169666658 processed_transcript
ENST00000496752 (WDR27-006) 169664286-169670693 retained_intron
ENST00000546525 (WDR27-013) 169558321-169667275 processed_transcript
ENST00000546953 (WDR27-011) 169669521-169701653 retained_intron
ENSG00000186340 (THBS2)
thrombospondin 2 		ENST00000366787 (THBS2-001) 169215780-169254044 protein_coding
ENST00000435791 (THBS2-002) 169248775-169252151 protein_coding
ENST00000461848 (THBS2-004) 169234510-169237412 processed_transcript
ENST00000472733 (THBS2-003) 169246065-169248680 processed_transcript
ENST00000488355 (THBS2-005) 169217454-169223440 processed_transcript
ENST00000617924 (THBS2-201) 169216192-169253832 protein_coding
ENSG00000224999 (VTA1P1)
vesicle (multivesicular body) trafficking 1 pseudogene 1 		ENST00000414044 (VTA1P1-001) 169296471-169297959 processed_pseudogene
ENSG00000226194 (RP1-137D17.1)
 ENST00000433388 (RP1-137D17.1-002) 169369998-169388385 lincRNA
ENST00000440168 (RP1-137D17.1-001) 169373681-169388385 lincRNA
ENSG00000226445 (XXyac-YX65C7_A.2)
 ENST00000444188 (XXyac-YX65C7_A.2-001) 169213254-169239565 antisense
ENSG00000272848 (RP1-137D17.2)
 ENST00000607876 (RP1-137D17.2-001) 169426420-169427069 lincRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_0004W1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000023885-ENSMUSG00000046991 CGP 10090 17:14665500-14934653
GeneTranscriptPositionBiotype
ENSMUSG00000023885 (Thbs2)
thrombospondin 2 		ENSMUST00000170872 (Thbs2-201) 14665500-14694262 protein_coding
ENSMUSG00000046991 (Wdr27)
WD repeat domain 27 		ENSMUST00000170386 (Wdr27-201) 14829331-14934653 protein_coding
ENSMUSG00000079311 (Gm3222)
predicted pseudogene 3222 		ENSMUST00000071282 (Gm3222-201) 14709066-14710055 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004W1_0001ENSG00000184465ENST00000423258ENST00000441385ENST00000448612ENST00000464249ENST00000467418ENST00000474018ENST00000476322ENST00000479310ENST00000486490ENST00000496752ENST00000546525ENST00000546953ENSG00000186340ENST00000366787ENST00000435791ENST00000461848ENST00000472733ENST00000488355ENST00000617924ENSG00000224999ENST00000414044ENSG00000226194ENST00000433388ENST00000440168ENSG00000226445ENST00000444188ENSG00000272848ENST00000607876CIL_0004W1_0002ENSMUSG00000023885ENSMUST00000170872ENSMUSG00000046991ENSMUST00000170386ENSMUSG00000079311ENSMUST00000071282
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004W1_0001ENSG00000184465ENST00000423258ENST00000441385ENST00000448612ENST00000467418ENST00000474018ENST00000476322ENST00000479310ENST00000496752ENST00000546525ENST00000546953ENSG00000186340ENST00000366787ENST00000617924ENSG00000224999ENST00000414044ENSG00000226194ENST00000433388ENST00000440168ENSG00000226445ENST00000444188ENSG00000272848ENST00000607876CIL_0004W1_0002ENSMUSG00000023885ENSMUST00000170872ENSMUSG00000046991ENSMUST00000170386ENSMUSG00000079311ENSMUST00000071282
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000184465 ENST00000423258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.533±0.00
ENST00000441385 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.802±0.00 N/A
ENST00000448612 N/A N/A N/A 0.314±0.00 N/A 0.283±0.00 N/A N/A N/A 0.545±0.00 N/A 4.794±0.00 0.225±0.07 2.872±1.49
ENST00000464249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467418 N/A N/A N/A 1.080±0.00 N/A 3.010±1.60 N/A N/A 0.742±0.00 2.032±0.00 0.557±0.00 17.332±6.93 N/A N/A
ENST00000474018 0.700±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476322 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.759±0.00 N/A
ENST00000479310 N/A N/A N/A N/A 0.581±0.00 N/A N/A N/A N/A N/A N/A 5.329±1.69 N/A N/A
ENST00000486490 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496752 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.343±0.00 N/A N/A N/A
ENST00000546525 N/A N/A N/A N/A 0.166±0.00 N/A 0.115±0.00 N/A N/A N/A N/A 2.772±0.00 0.123±0.00 0.694±0.00
ENST00000546953 N/A 0.427±0.00 N/A 0.724±0.00 N/A 0.361±0.00 0.241±0.00 0.406±0.00 0.764±0.00 N/A N/A 3.153±0.00 0.101±0.00 2.133±0.00
ENSG00000186340 ENST00000366787 27.975±0.00 8.564±0.00 0.339±0.00 4.912±3.71 7.438±0.15 11.498±10.58 2.379±1.57 2.087±0.00 2.309±0.00 4.633±3.39 1.104±0.00 20.466±15.14 1.019±0.50 4.334±3.58
ENST00000435791 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461848 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472733 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617924 15.827±0.00 N/A 0.223±0.00 N/A 9.402±0.00 4.104±2.75 1.004±0.00 3.016±0.00 4.250±0.00 N/A 0.444±0.00 7.137±0.00 0.296±0.00 N/A
ENSG00000224999 ENST00000414044 N/A N/A N/A 0.026±0.00 N/A N/A N/A N/A N/A 0.089±0.00 N/A 0.058±0.05 N/A 0.023±0.00
ENSG00000226194 ENST00000433388 N/A N/A N/A 0.648±0.00 N/A 0.038±0.00 N/A N/A N/A 0.205±0.00 N/A 1.188±0.00 0.147±0.00 0.175±0.00
ENST00000440168 0.015±0.00 0.054±0.00 N/A 0.050±0.00 0.083±0.04 0.013±0.00 0.005±0.00 0.083±0.00 N/A 0.042±0.01 N/A 0.092±0.04 0.037±0.00 0.075±0.01
ENSG00000226445 ENST00000444188 0.959±0.00 0.576±0.00 N/A 0.729±0.00 0.308±0.00 0.711±0.65 0.258±0.01 0.582±0.00 0.067±0.02 0.455±0.30 N/A 0.931±0.49 0.396±0.33 0.398±0.01
ENSG00000272848 ENST00000607876 0.262±0.00 0.260±0.00 N/A 0.064±0.01 0.026±0.00 0.433±0.00 0.124±0.00 0.105±0.00 0.091±0.00 0.022±0.00 N/A 0.849±0.23 0.251±0.02 1.269±0.22
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000023885 ENSMUST00000170872 13.184±1.24 1.402±0.33 28.686±6.57 1.697±0.65 24.357±1.79 9.433±0.48 6.106±0.69 2.349±0.46 0.890±0.59 1.936±0.13 1.266±0.48 13.211±5.68 4.420±3.13 0.270±0.11
ENSMUSG00000046991 ENSMUST00000170386 0.139±0.09 0.163±0.06 0.276±0.04 0.123±0.06 0.053±0.02 0.039±0.01 0.023±0.01 0.115±0.07 0.009±0.00 N/A 0.035±0.02 0.701±0.22 0.299±0.05 5.144±2.96
ENSMUSG00000079311 ENSMUST00000071282 0.257±0.20 0.163±0.09 2.522±1.60 0.857±1.05 0.273±0.20 0.214±0.12 0.499±0.38 0.314±0.12 1.275±2.36 0.092±0.01 0.853±0.21 0.230±0.08 0.236±0.13 0.042±0.01

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