C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004XV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000080839-ENSG00000101353 CGP 9606 20:36996349-37179588
GeneTranscriptPositionBiotype
ENSG00000080839 (RBL1)
retinoblastoma-like 1 		ENST00000344359 (RBL1-002) 37003574-37095989 protein_coding
ENST00000373664 (RBL1-001) 36996349-37095995 protein_coding
ENST00000525052 (RBL1-004) 37056160-37068055 protein_coding
ENST00000527999 (RBL1-003) 37068087-37095995 nonsense_mediated_decay
ENSG00000118705 (RPN2)
ribophorin II 		ENST00000237530 (RPN2-001) 37179046-37241623 protein_coding
ENST00000373622 (RPN2-003) 37179161-37241619 protein_coding
ENST00000373632 (RPN2-002) 37179318-37210165 protein_coding
ENST00000437329 (RPN2-006) 37228634-37241418 protein_coding
ENST00000456102 (RPN2-004) 37178410-37210150 protein_coding
ENST00000456400 (RPN2-007) 37228678-37241429 protein_coding
ENST00000462163 (RPN2-005) 37179330-37207443 nonsense_mediated_decay
ENST00000470352 (RPN2-008) 37229870-37241417 processed_transcript
ENSG00000226144 (RPS27AP3)
ribosomal protein S27a pseudogene 3 		ENST00000453803 (RPS27AP3-001) 37049254-37049707 processed_pseudogene
ENSG00000231241 (RPS3AP3)
ribosomal protein S3A pseudogene 3 		ENST00000411933 (RPS3AP3-001) 37021743-37021984 processed_pseudogene
ENSG00000236159 (RP3-343K2.4)
 ENST00000447075 (RP3-343K2.4-001) 37165774-37166312 processed_pseudogene
CIL_0004XV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027641-ENSMUSG00000074627 CGP 10090 2:157145893-157279549
GeneTranscriptPositionBiotype
ENSMUSG00000027641 (Rbl1)
retinoblastoma-like 1 (p107) 		ENSMUST00000029170 (Rbl1-001) 157145893-157204512 protein_coding
ENSMUST00000124518 (Rbl1-002) 157174986-157204526 retained_intron
ENSMUST00000141296 (Rbl1-004) 157188263-157192383 retained_intron
ENSMUST00000154721 (Rbl1-003) 157166978-157204534 retained_intron
ENSMUSG00000027642 (Rpn2)
ribophorin II 		ENSMUST00000029171 (Rpn2-002) 157279146-157326319 protein_coding
ENSMUST00000116380 (Rpn2-001) 157279059-157326319 protein_coding
ENSMUST00000123639 (Rpn2-008) 157314551-157316208 processed_transcript
ENSMUST00000125311 (Rpn2-009) 157294842-157295353 processed_transcript
ENSMUST00000126248 (Rpn2-004) 157283583-157325735 processed_transcript
ENSMUST00000127252 (Rpn2-003) 157279426-157326056 processed_transcript
ENSMUST00000141934 (Rpn2-011) 157316177-157322471 retained_intron
ENSMUST00000142463 (Rpn2-006) 157279017-157289561 processed_transcript
ENSMUST00000149924 (Rpn2-010) 157319783-157322160 retained_intron
ENSMUST00000150349 (Rpn2-005) 157279569-157290711 processed_transcript
ENSMUST00000156007 (Rpn2-007) 157281943-157290592 processed_transcript
ENSMUSG00000084113 (Gm14277)
predicted gene 14277 		ENSMUST00000121195 (Gm14277-001) 157168820-157169179 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004XV_0001ENSG00000080839ENST00000344359ENST00000373664ENST00000525052ENST00000527999ENSG00000118705ENST00000237530ENST00000373622ENST00000373632ENST00000437329ENST00000456102ENST00000456400ENST00000462163ENST00000470352ENSG00000226144ENST00000453803ENSG00000231241ENST00000411933ENSG00000236159ENST00000447075CIL_0004XV_0002ENSMUSG00000027641ENSMUST00000029170ENSMUST00000124518ENSMUST00000141296ENSMUST00000154721ENSMUSG00000027642ENSMUST00000029171ENSMUST00000116380ENSMUST00000123639ENSMUST00000125311ENSMUST00000126248ENSMUST00000127252ENSMUST00000141934ENSMUST00000142463ENSMUST00000149924ENSMUST00000150349ENSMUST00000156007ENSMUSG00000084113ENSMUST00000121195
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004XV_0001ENSG00000080839ENST00000344359ENST00000373664ENST00000525052ENSG00000118705ENST00000237530ENST00000373622ENST00000373632ENST00000470352ENSG00000226144ENST00000453803ENSG00000231241ENST00000411933ENSG00000236159ENST00000447075CIL_0004XV_0002ENSMUSG00000027641ENSMUST00000029170ENSMUST00000124518ENSMUST00000154721ENSMUSG00000027642ENSMUST00000029171ENSMUST00000116380ENSMUST00000126248ENSMUST00000127252ENSMUSG00000084113ENSMUST00000121195
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000080839 ENST00000344359 0.600±0.00 N/A 0.514±0.00 0.504±0.00 1.797±0.00 0.704±0.06 0.673±0.00 N/A 1.217±0.00 1.972±0.00 N/A 3.445±0.00 0.529±0.00 N/A
ENST00000373664 N/A 0.168±0.00 0.048±0.00 0.360±0.00 0.542±0.06 0.103±0.00 0.687±0.00 0.499±0.08 0.099±0.00 0.376±0.05 1.593±0.00 1.536±0.74 0.648±0.28 1.110±0.70
ENST00000525052 N/A N/A 0.355±0.00 N/A 4.505±0.00 N/A N/A 0.821±0.00 1.670±0.00 N/A 1.096±0.00 6.175±0.00 N/A N/A
ENST00000527999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000118705 ENST00000237530 40.257±0.00 55.267±0.00 9.452±0.00 7.919±4.95 32.884±8.66 27.048±12.88 10.501±0.00 53.143±34.46 59.360±52.65 36.519±28.40 11.679±10.32 62.496±24.97 181.700±26.24 60.948±0.00
ENST00000373622 N/A 10.076±0.00 N/A 9.779±0.00 7.992±0.00 N/A N/A N/A N/A N/A 19.714±0.00 12.299±0.00 N/A 73.585±42.17
ENST00000373632 N/A N/A N/A N/A N/A N/A N/A N/A 4.947±0.00 N/A N/A N/A N/A N/A
ENST00000437329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456102 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462163 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470352 N/A N/A N/A N/A 40.465±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000226144 ENST00000453803 0.115±0.00 N/A N/A 0.118±0.00 N/A 0.028±0.00 N/A N/A N/A 0.028±0.00 N/A 0.054±0.00 N/A N/A
ENSG00000231241 ENST00000411933 N/A N/A N/A N/A 3.170±0.00 N/A N/A N/A N/A N/A N/A 0.323±0.01 N/A 0.143±0.10
ENSG00000236159 ENST00000447075 N/A 0.157±0.00 N/A 0.163±0.00 0.026±0.00 N/A N/A N/A 0.667±0.00 N/A N/A 0.033±0.00 N/A 0.199±0.08
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027641 ENSMUST00000029170 2.905±1.28 1.928±0.28 2.267±0.12 4.875±0.17 3.041±1.29 5.469±1.05 0.496±0.08 1.952±0.32 5.497±5.68 3.722±0.69 0.326±0.13 3.966±1.28 3.672±1.41 4.610±1.93
ENSMUST00000124518 N/A 1.458±0.25 N/A 0.246±0.00 1.704±0.00 2.616±0.48 N/A N/A N/A 1.054±0.00 0.209±0.06 1.728±0.63 N/A 2.252±0.00
ENSMUST00000141296 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154721 0.470±0.00 N/A N/A 0.056±0.00 0.508±0.00 1.628±0.00 0.178±0.00 0.592±0.00 N/A N/A 0.325±0.00 1.312±0.29 N/A N/A
ENSMUSG00000027642 ENSMUST00000029171 N/A N/A N/A 11.510±0.00 N/A N/A N/A N/A N/A N/A 5.582±1.22 N/A N/A 38.075±0.00
ENSMUST00000116380 29.730±8.43 64.956±16.97 18.752±2.97 28.372±2.00 42.615±8.33 60.850±12.91 N/A 26.628±11.55 34.542±10.97 39.647±9.31 N/A 54.448±18.21 56.541±18.26 40.820±0.00
ENSMUST00000123639 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125311 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126248 67.129±10.85 52.886±16.20 N/A 28.432±5.25 44.043±2.90 46.360±16.86 16.157±1.91 31.706±16.25 36.233±12.48 58.134±4.45 6.096±0.87 74.406±9.36 N/A 66.581±22.17
ENSMUST00000127252 21.652±6.92 N/A 53.896±0.78 N/A 37.562±18.85 N/A 10.208±1.45 35.927±8.60 45.018±8.06 15.050±0.48 8.471±0.93 121.935±5.50 196.701±76.21 33.543±5.77
ENSMUST00000141934 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150349 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156007 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000084113 ENSMUST00000121195 N/A N/A 0.091±0.01 0.155±0.05 0.450±0.00 N/A 0.161±0.00 N/A 0.341±0.15 N/A N/A 0.166±0.05 0.176±0.07 0.741±0.33

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