C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004Y9_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000068137-ENSDARG00000092450 CGP 7955 7:56093081-56124399
GeneTranscriptPositionBiotype
ENSDARG00000068137 (si:dkey-173l11.5)
si:dkey-173l11.5 		ENSDART00000098342 (si:dkey-173l11.5-201) 56093081-56103550 protein_coding
ENSDART00000149444 (si:dkey-173l11.5-001) 56093081-56108484 protein_coding
ENSDARG00000092450 (si:dkey-173l11.3)
si:dkey-173l11.3 		ENSDART00000044592 (si:dkey-173l11.3-001) 56111868-56124399 protein_coding
CIL_0004Y9_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000092450-ENSDARG00000024371 CGP 7955 7:56111868-56228078
GeneTranscriptPositionBiotype
ENSDARG00000024371 (cdh1)
cadherin 1, epithelial 		ENSDART00000097719 (cdh1-201) 56206925-56228078 protein_coding
ENSDART00000147057 (cdh1-001) 56206925-56227011 protein_coding
ENSDARG00000035791 (si:busm1-71b9.3)
si:busm1-71b9.3 		ENSDART00000043087 (si:busm1-71b9.3-001) 56142917-56154034 processed_transcript
ENSDART00000150237 (si:busm1-71b9.3-002) 56135286-56153173 transcribed_unprocessed_pseudogene
ENSDARG00000092450 (si:dkey-173l11.3)
si:dkey-173l11.3 		ENSDART00000044592 (si:dkey-173l11.3-001) 56111868-56124399 protein_coding
CIL_0004Y9_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000062038-ENSG00000039068 CGP 9606 16:68636189-68835548
GeneTranscriptPositionBiotype
ENSG00000039068 (CDH1)
cadherin 1, type 1, E-cadherin (epithelial) 		ENST00000261769 (CDH1-001) 68737225-68835548 protein_coding
ENST00000422392 (CDH1-004) 68737352-68833536 protein_coding
ENST00000561751 (CDH1-010) 68801740-68812240 nonsense_mediated_decay
ENST00000562118 (CDH1-013) 68823245-68833584 retained_intron
ENST00000562836 (CDH1-002) 68763294-68833538 processed_transcript
ENST00000564676 (CDH1-003) 68765120-68808848 processed_transcript
ENST00000564745 (CDH1-007) 68770948-68808747 processed_transcript
ENST00000565810 (CDH1-011) 68812083-68813413 retained_intron
ENST00000566510 (CDH1-006) 68737352-68833536 nonsense_mediated_decay
ENST00000566612 (CDH1-005) 68737312-68835030 nonsense_mediated_decay
ENST00000567320 (CDH1-012) 68808527-68809003 retained_intron
ENST00000611625 (CDH1-201) 68737292-68835541 protein_coding
ENST00000612417 (CDH1-202) 68737292-68834281 protein_coding
ENST00000621016 (CDH1-203) 68737309-68835534 protein_coding
ENSG00000062038 (CDH3)
cadherin 3, type 1, P-cadherin (placental) 		ENST00000264012 (CDH3-001) 68644836-68700295 protein_coding
ENST00000429102 (CDH3-002) 68644993-68699036 protein_coding
ENST00000542274 (CDH3-003) 68645301-68698692 nonsense_mediated_decay
ENST00000565453 (CDH3-004) 68636189-68645318 processed_transcript
ENST00000566808 (CDH3-006) 68645637-68679812 nonsense_mediated_decay
ENST00000567674 (CDH3-009) 68687620-68698472 nonsense_mediated_decay
ENST00000568292 (CDH3-005) 68691846-68696134 protein_coding
ENST00000569036 (CDH3-007) 68678267-68682392 nonsense_mediated_decay
ENST00000569080 (CDH3-010) 68695825-68722616 protein_coding
ENST00000569117 (CDH3-008) 68696144-68696923 processed_transcript
ENSG00000200558 (RNA5SP429)
RNA, 5S ribosomal pseudogene 429 		ENST00000363688 (RNA5SP429-201) 68742480-68742588 rRNA
ENSG00000260459 (FTLP14)
ferritin, light polypeptide pseudogene 14 		ENST00000562087 (FTLP14-001) 68822587-68823070 processed_pseudogene
ENSG00000260577 (RP11-615I2.2)
 ENST00000562172 (RP11-615I2.2-001) 68644248-68646168 antisense
ENSG00000260860 (RP11-615I2.3)
 ENST00000562089 (RP11-615I2.3-001) 68651056-68651948 processed_pseudogene
ENSG00000261395 (HSPE1P5)
heat shock 10kDa protein 1 pseudogene 5 		ENST00000561489 (HSPE1P5-001) 68686399-68686670 transcribed_processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004Y9_0001ENSDARG00000068137ENSDART00000098342ENSDART00000149444ENSDARG00000092450ENSDART00000044592CIL_0004Y9_0002ENSDARG00000024371ENSDART00000097719ENSDART00000147057ENSDARG00000035791ENSDART00000043087ENSDART00000150237ENSDARG00000092450ENSDART00000044592CIL_0004Y9_0003ENSG00000039068ENST00000261769ENST00000422392ENST00000561751ENST00000562118ENST00000562836ENST00000564676ENST00000564745ENST00000565810ENST00000566510ENST00000566612ENST00000567320ENST00000611625ENST00000612417ENST00000621016ENSG00000062038ENST00000264012ENST00000429102ENST00000542274ENST00000565453ENST00000566808ENST00000567674ENST00000568292ENST00000569036ENST00000569080ENST00000569117ENSG00000200558ENST00000363688ENSG00000260459ENST00000562087ENSG00000260577ENST00000562172ENSG00000260860ENST00000562089ENSG00000261395ENST00000561489
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004Y9_0001ENSDARG00000068137ENSDART00000098342ENSDART00000149444ENSDARG00000092450ENSDART00000044592CIL_0004Y9_0002ENSDARG00000024371ENSDART00000097719ENSDART00000147057ENSDARG00000035791ENSDART00000043087ENSDART00000150237ENSDARG00000092450ENSDART00000044592CIL_0004Y9_0003ENSG00000039068ENST00000261769ENST00000422392ENST00000562118ENST00000562836ENST00000564676ENST00000566510ENST00000566612ENST00000612417ENST00000621016ENSG00000062038ENST00000264012ENST00000429102ENST00000542274ENST00000566808ENST00000567674ENST00000568292ENST00000569036ENST00000569117ENSG00000200558ENST00000363688ENSG00000260459ENST00000562087ENSG00000260577ENST00000562172ENSG00000260860ENST00000562089ENSG00000261395ENST00000561489
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000068137 ENSDART00000098342 N/A N/A N/A 0.054±0.02 N/A N/A 0.031±0.00 0.103±0.00 N/A N/A 0.104±0.00 N/A N/A N/A
ENSDART00000149444 N/A N/A N/A 0.072±0.00 N/A N/A 0.148±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000092450 ENSDART00000044592 N/A N/A N/A 0.070±0.00 N/A N/A 0.152±0.02 0.583±0.00 0.022±0.00 N/A 0.186±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000024371 ENSDART00000097719 N/A N/A N/A 1.595±1.32 N/A N/A 4.083±1.76 24.515±10.77 2.880±0.00 N/A 2.118±0.00 N/A N/A N/A
ENSDART00000147057 N/A N/A N/A 0.031±0.00 N/A N/A N/A 14.827±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000035791 ENSDART00000043087 N/A N/A N/A 0.020±0.00 N/A N/A N/A 0.166±0.01 N/A N/A N/A N/A N/A N/A
ENSDART00000150237 N/A N/A N/A 0.096±0.06 N/A N/A 0.220±0.00 N/A N/A N/A 0.067±0.00 N/A N/A N/A
ENSDARG00000092450 ENSDART00000044592 N/A N/A N/A 0.070±0.00 N/A N/A 0.152±0.02 0.583±0.00 0.022±0.00 N/A 0.186±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000039068 ENST00000261769 N/A N/A 3.124±0.00 0.679±0.00 6.346±1.29 22.879±0.00 N/A 12.166±1.55 4.628±0.05 6.176±2.22 N/A 7.563±3.67 33.338±1.46 0.843±0.00
ENST00000422392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.285±0.00 N/A 0.070±0.00
ENST00000561751 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562118 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 66.384±0.00 0.119±0.00
ENST00000562836 N/A N/A 2.951±0.00 N/A N/A N/A N/A N/A N/A 2.313±0.00 N/A 3.902±0.00 N/A N/A
ENST00000564676 N/A N/A N/A N/A N/A N/A 0.093±0.00 N/A N/A N/A 0.014±0.00 N/A N/A N/A
ENST00000564745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565810 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566510 N/A N/A N/A 0.225±0.00 N/A N/A N/A N/A N/A 3.016±0.00 N/A N/A N/A N/A
ENST00000566612 N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000567320 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.202±0.00 N/A N/A N/A
ENST00000621016 N/A N/A N/A 0.118±0.00 5.934±0.00 4.935±0.00 N/A 11.905±0.00 5.826±0.00 2.642±0.42 N/A 7.235±6.84 22.321±13.32 1.144±0.00
ENSG00000062038 ENST00000264012 0.115±0.00 N/A N/A N/A 0.305±0.00 0.056±0.00 0.035±0.00 0.018±0.00 0.053±0.02 0.065±0.00 0.006±0.00 N/A N/A 0.162±0.00
ENST00000429102 N/A 2.403±0.00 0.367±0.00 0.624±0.54 5.444±0.00 0.116±0.00 N/A 1.700±1.68 0.212±0.00 4.361±0.00 N/A 19.582±14.90 3.878±1.86 1.631±1.41
ENST00000542274 0.063±0.00 N/A N/A 0.314±0.00 2.033±0.00 N/A 0.180±0.00 1.262±0.00 N/A 0.149±0.00 N/A 12.742±5.43 7.804±0.00 1.226±0.39
ENST00000565453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566808 N/A N/A N/A N/A 1.601±0.00 N/A N/A N/A N/A N/A 0.091±0.00 N/A N/A N/A
ENST00000567674 N/A 2.503±0.00 0.482±0.00 N/A 7.473±0.00 0.432±0.26 N/A N/A N/A 3.432±0.00 N/A 35.973±16.09 5.946±3.49 5.004±0.00
ENST00000568292 N/A N/A N/A 0.402±0.00 N/A N/A N/A N/A N/A 0.333±0.00 N/A N/A N/A N/A
ENST00000569036 N/A N/A N/A N/A N/A 0.312±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569117 0.029±0.00 0.511±0.00 0.368±0.00 0.269±0.00 0.525±0.00 0.086±0.00 0.087±0.00 0.220±0.00 0.027±0.00 0.171±0.00 N/A 1.059±0.60 0.186±0.00 0.487±0.10
ENSG00000200558 ENST00000363688 N/A N/A N/A N/A N/A N/A N/A 1.108±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000260459 ENST00000562087 N/A 0.181±0.00 N/A N/A 0.340±0.00 0.301±0.13 N/A 0.475±0.00 N/A 0.836±0.00 N/A 0.375±0.26 1.216±0.64 0.091±0.00
ENSG00000260577 ENST00000562172 N/A N/A N/A 0.150±0.00 0.469±0.00 N/A N/A N/A 0.327±0.00 N/A 0.017±0.00 28.646±10.71 N/A 0.770±0.00
ENSG00000260860 ENST00000562089 N/A N/A 0.185±0.00 0.058±0.00 0.081±0.00 N/A 0.278±0.00 N/A N/A N/A N/A 0.181±0.15 N/A N/A
ENSG00000261395 ENST00000561489 N/A 0.057±0.00 N/A 0.231±0.00 N/A 0.155±0.00 0.053±0.00 0.114±0.00 0.367±0.00 0.384±0.00 N/A 1.240±1.05 N/A 0.187±0.00

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