C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004YB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000002502-ENSDARG00000060017 CGP 7955 Zv9_scaffold3485:101776-187004
GeneTranscriptPositionBiotype
ENSDARG00000002502 (vat1l)
vesicle amine transport protein 1 homolog (T. californica)-like 		ENSDART00000126956 (vat1l-201) 101776-166677 protein_coding
ENSDARG00000060017 (CLEC3A)
C-type lectin domain family 3, member A 		ENSDART00000084118 (CLEC3A-201) 179803-187004 protein_coding
CIL_0004YB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000171724-ENSG00000166509 CGP 9606 16:77788530-78066761
GeneTranscriptPositionBiotype
ENSG00000166509 (CLEC3A)
C-type lectin domain family 3, member A 		ENST00000299642 (CLEC3A-001) 78022515-78032106 protein_coding
ENST00000565808 (CLEC3A-003) 78029089-78030951 processed_transcript
ENST00000567430 (CLEC3A-002) 78022515-78066761 nonsense_mediated_decay
ENSG00000171724 (VAT1L)
vesicle amine transport 1-like 		ENST00000302536 (VAT1L-001) 77788530-77980107 protein_coding
ENST00000563850 (VAT1L-002) 77862748-77882408 processed_transcript
ENSG00000260731 (KRT8P22)
keratin 8 pseudogene 22 		ENST00000562317 (KRT8P22-001) 78048483-78049897 processed_pseudogene
ENSG00000261330 (RP11-281J9.1)
 ENST00000567559 (RP11-281J9.1-001) 77892422-77892915 processed_pseudogene
ENSG00000261540 (RP11-281J9.2)
 ENST00000563114 (RP11-281J9.2-001) 78014683-78059454 antisense
ENSG00000261776 (RP11-358L22.2)
 ENST00000567157 (RP11-358L22.2-001) 78055824-78056927 processed_pseudogene
ENSG00000278926 (RP11-264M12.4)
 ENST00000624876 (RP11-264M12.4-001) 77800023-77801714 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0004YB_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000046844-ENSMUSG00000008874 CGP 10090 8:114205612-114425846
GeneTranscriptPositionBiotype
ENSMUSG00000008874 (Clec3a)
C-type lectin domain family 3, member a 		ENSMUST00000009018 (Clec3a-001) 114418086-114425846 protein_coding
ENSMUSG00000046844 (Vat1l)
vesicle amine transport protein 1 homolog-like (T. californica) 		ENSMUST00000049509 (Vat1l-001) 114205630-114374071 protein_coding
ENSMUST00000124143 (Vat1l-004) 114368116-114374070 retained_intron
ENSMUST00000142591 (Vat1l-003) 114205612-114230325 processed_transcript
ENSMUST00000150963 (Vat1l-002) 114205634-114230319 protein_coding
ENSMUSG00000084848 (4933408N05Rik)
RIKEN cDNA 4933408N05 gene 		ENSMUST00000139864 (4933408N05Rik-001) 114341160-114351479 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004YB_0001ENSDARG00000002502ENSDART00000126956ENSDARG00000060017ENSDART00000084118CIL_0004YB_0002ENSG00000166509ENST00000299642ENST00000565808ENST00000567430ENSG00000171724ENST00000302536ENST00000563850ENSG00000260731ENST00000562317ENSG00000261330ENST00000567559ENSG00000261540ENST00000563114ENSG00000261776ENST00000567157ENSG00000278926ENST00000624876CIL_0004YB_0003ENSMUSG00000008874ENSMUST00000009018ENSMUSG00000046844ENSMUST00000049509ENSMUST00000124143ENSMUST00000142591ENSMUST00000150963ENSMUSG00000084848ENSMUST00000139864
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004YB_0001ENSDARG00000002502ENSDART00000126956ENSDARG00000060017ENSDART00000084118CIL_0004YB_0002ENSG00000166509ENST00000299642ENST00000565808ENST00000567430ENSG00000171724ENST00000302536ENST00000563850ENSG00000260731ENST00000562317ENSG00000261330ENST00000567559ENSG00000261540ENST00000563114ENSG00000261776ENST00000567157ENSG00000278926ENST00000624876CIL_0004YB_0003ENSMUSG00000008874ENSMUST00000009018ENSMUSG00000046844ENSMUST00000049509ENSMUST00000124143ENSMUST00000142591ENSMUST00000150963ENSMUSG00000084848ENSMUST00000139864
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000002502 ENSDART00000126956 N/A N/A N/A 2.714±0.17 N/A N/A 0.134±0.00 0.260±0.00 0.039±0.00 N/A 0.057±0.00 N/A N/A N/A
ENSDARG00000060017 ENSDART00000084118 N/A N/A N/A N/A N/A N/A N/A 0.193±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000166509 ENST00000299642 N/A N/A N/A 0.032±0.00 0.187±0.00 N/A N/A 0.026±0.00 2.545±0.00 0.381±0.00 N/A N/A 0.017±0.00 0.024±0.00
ENST00000565808 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.247±0.00 N/A 0.157±0.00 N/A N/A
ENST00000567430 0.082±0.00 0.587±0.00 N/A 0.251±0.00 0.194±0.00 0.099±0.00 0.154±0.00 0.215±0.00 0.072±0.00 0.392±0.00 0.238±0.00 0.114±0.00 N/A 0.343±0.00
ENSG00000171724 ENST00000302536 0.210±0.00 0.162±0.00 0.488±0.00 9.088±3.17 0.372±0.25 2.298±1.37 4.246±2.76 1.697±1.68 0.409±0.39 0.415±0.00 0.404±0.00 0.278±0.13 1.206±0.86 2.096±0.13
ENST00000563850 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.050±0.00 N/A N/A N/A N/A
ENSG00000260731 ENST00000562317 N/A N/A N/A 0.017±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.019±0.00 0.061±0.00
ENSG00000261330 ENST00000567559 0.082±0.00 0.254±0.00 0.885±0.00 0.178±0.00 0.057±0.00 0.232±0.00 N/A 0.056±0.00 N/A 0.104±0.00 0.320±0.00 N/A N/A 1.088±0.00
ENSG00000261540 ENST00000563114 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.045±0.00
ENSG00000261776 ENST00000567157 0.031±0.00 0.165±0.00 N/A 0.018±0.00 0.087±0.00 0.016±0.00 0.031±0.00 0.095±0.06 0.030±0.00 N/A 0.146±0.00 N/A N/A 0.093±0.00
ENSG00000278926 ENST00000624876 0.039±0.00 0.118±0.00 N/A 0.141±0.07 0.078±0.00 0.089±0.00 0.122±0.08 0.093±0.00 0.027±0.00 0.179±0.10 0.027±0.00 N/A N/A 0.125±0.05
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000008874 ENSMUST00000009018 N/A N/A N/A N/A N/A N/A 1.026±0.56 N/A N/A N/A 0.199±0.10 N/A 0.054±0.02 0.467±0.11
ENSMUSG00000046844 ENSMUST00000049509 0.455±0.09 2.513±0.43 0.426±0.06 22.276±2.71 2.560±0.93 1.147±0.03 0.480±0.16 0.541±0.09 0.026±0.01 0.350±0.13 0.351±0.16 0.064±0.06 0.079±0.03 0.184±0.10
ENSMUST00000124143 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.073±0.00 N/A 0.014±0.00
ENSMUST00000142591 N/A N/A N/A N/A N/A N/A N/A 0.508±0.00 N/A N/A N/A N/A 0.216±0.00 N/A
ENSMUST00000150963 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.305±0.00 N/A N/A N/A
ENSMUSG00000084848 ENSMUST00000139864 N/A N/A N/A 0.110±0.00 0.036±0.01 N/A N/A 0.048±0.02 0.006±0.00 N/A N/A 0.138±0.10 0.135±0.21 2.234±0.81

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