C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004ZJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000006316-ENSDARG00000002391 CGP 7955 21:25465361-25483451
GeneTranscriptPositionBiotype
ENSDARG00000002391 (tlcd1)
TLC domain containing 1 		ENSDART00000027848 (tlcd1-001) 25473702-25483451 protein_coding
ENSDARG00000006316 (rpl23a)
ribosomal protein L23a 		ENSDART00000003001 (rpl23a-001) 25465361-25468127 protein_coding
ENSDART00000134939 (rpl23a-003) 25465400-25467653 retained_intron
ENSDART00000141001 (rpl23a-002) 25465448-25468125 processed_transcript
ENSDART00000146573 (rpl23a-004) 25465421-25468125 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0004ZJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000198242-ENSG00000160606 CGP 9606 17:28719393-28727935
GeneTranscriptPositionBiotype
ENSG00000198242 (RPL23A)
ribosomal protein L23a 		ENST00000355731 (RPL23A-003) 28720299-28723992 protein_coding
ENST00000394935 (RPL23A-004) 28720264-28723933 protein_coding
ENST00000394938 (RPL23A-009) 28720244-28723936 protein_coding
ENST00000422514 (RPL23A-001) 28719393-28724359 protein_coding
ENST00000472628 (RPL23A-006) 28720569-28723936 protein_coding
ENST00000496182 (RPL23A-002) 28720079-28723936 protein_coding
ENST00000578181 (RPL23A-011) 28720705-28723800 protein_coding
ENST00000580755 (RPL23A-010) 28723300-28723937 retained_intron
ENST00000582736 (RPL23A-008) 28719991-28721261 retained_intron
ENSG00000264577 (SNORD4A)
small nucleolar RNA, C/D box 4A 		ENST00000582718 (SNORD4A-001) 28721487-28722877 antisense
ENSG00000267729 (AC010761.14)
 ENST00000587898 (AC010761.14-001) 28727258-28727739 antisense

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004ZJ_0001ENSDARG00000002391ENSDART00000027848ENSDARG00000006316ENSDART00000003001ENSDART00000134939ENSDART00000141001ENSDART00000146573CIL_0004ZJ_0002ENSG00000198242ENST00000355731ENST00000394935ENST00000394938ENST00000422514ENST00000472628ENST00000496182ENST00000578181ENST00000580755ENST00000582736ENSG00000264577ENST00000582718ENSG00000267729ENST00000587898
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004ZJ_0001ENSDARG00000002391ENSDART00000027848ENSDARG00000006316ENSDART00000003001ENSDART00000134939ENSDART00000146573CIL_0004ZJ_0002ENSG00000198242ENST00000355731ENST00000394935ENST00000394938ENST00000422514ENST00000472628ENST00000496182ENST00000582736ENSG00000264577ENST00000582718ENSG00000267729ENST00000587898
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000002391 ENSDART00000027848 N/A N/A N/A 13.422±7.19 N/A N/A 0.394±0.09 1.095±0.00 0.050±0.00 N/A 7.960±0.00 N/A N/A N/A
ENSDARG00000006316 ENSDART00000003001 N/A N/A N/A 267.180±2.89 N/A N/A 1088.673±325.67 503.311±697.67 674.812±0.00 N/A 758.524±0.00 N/A N/A N/A
ENSDART00000134939 N/A N/A N/A N/A N/A N/A 0.635±0.00 0.638±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000141001 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000146573 N/A N/A N/A 44.455±0.00 N/A N/A 0.433±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000198242 ENST00000355731 153.142±0.00 214.576±0.00 21.146±0.00 37.073±9.47 71.108±6.19 136.289±55.70 40.301±0.00 30.816±13.72 81.924±0.00 74.787±0.00 34.735±0.00 311.296±310.86 412.556±295.27 74.331±54.65
ENST00000394935 106.388±0.00 173.711±0.00 N/A 44.524±0.00 60.693±30.90 112.275±92.67 22.437±9.02 87.215±46.03 74.548±47.33 331.629±0.00 182.267±152.14 117.402±76.54 139.124±0.00 72.081±45.47
ENST00000394938 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.688±0.00
ENST00000422514 N/A N/A N/A 7.788±2.92 N/A N/A N/A 21.510±0.00 9.928±0.00 29.185±0.00 N/A 29.723±15.70 N/A N/A
ENST00000472628 N/A N/A 8.579±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496182 N/A N/A N/A N/A N/A N/A 86.995±0.00 N/A N/A N/A N/A 144.204±75.44 N/A N/A
ENST00000578181 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580755 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582736 185.953±0.00 237.563±0.00 14.297±0.00 32.532±9.85 94.727±12.07 98.192±56.07 30.574±0.00 52.999±0.00 65.847±0.00 49.143±0.00 56.352±8.49 101.575±0.00 N/A 96.897±0.00
ENSG00000264577 ENST00000582718 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 77.224±15.87 51.527±4.23 22.286±0.00
ENSG00000267729 ENST00000587898 0.694±0.00 0.237±0.00 N/A 0.683±0.00 0.878±0.00 0.692±0.00 0.220±0.00 2.178±0.00 0.105±0.00 0.218±0.00 N/A 9.484±9.02 N/A 1.182±1.07

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