C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000502_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000017901-ENSDARG00000033683 CGP 7955 7:31200056-31297120
GeneTranscriptPositionBiotype
ENSDARG00000033683 (tpma)
alpha-tropomyosin 		ENSDART00000039657 (tpma-201) 31288757-31297120 protein_coding
ENSDART00000054763 (tpma-202) 31291304-31297120 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_000502_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000171914-ENSG00000140416 CGP 9606 15:62390526-63071915
GeneTranscriptPositionBiotype
ENSG00000140416 (TPM1)
tropomyosin 1 (alpha) 		ENST00000267996 (TPM1-005) 63042758-63071915 protein_coding
ENST00000288398 (TPM1-001) 63042632-63066093 protein_coding
ENST00000317516 (TPM1-016) 63048576-63069943 protein_coding
ENST00000334895 (TPM1-011) 63048366-63070632 protein_coding
ENST00000357980 (TPM1-008) 63042751-63071912 protein_coding
ENST00000358278 (TPM1-018) 63042685-63071889 protein_coding
ENST00000403994 (TPM1-002) 63042750-63066013 protein_coding
ENST00000404484 (TPM1-012) 63048467-63071884 protein_coding
ENST00000558072 (TPM1-025) 63062057-63071323 retained_intron
ENST00000558264 (TPM1-017) 63055729-63071912 nonsense_mediated_decay
ENST00000558314 (TPM1-006) 63042751-63061265 retained_intron
ENST00000558347 (TPM1-009) 63042755-63071885 nonsense_mediated_decay
ENST00000558400 (TPM1-030) 63056861-63059962 retained_intron
ENST00000558544 (TPM1-013) 63048500-63071882 nonsense_mediated_decay
ENST00000558868 (TPM1-021) 63048537-63061098 retained_intron
ENST00000558910 (TPM1-023) 63062629-63065278 protein_coding
ENST00000559108 (TPM1-031) 63062108-63066092 retained_intron
ENST00000559281 (TPM1-015) 63048576-63066003 protein_coding
ENST00000559397 (TPM1-010) 63042758-63071900 protein_coding
ENST00000559556 (TPM1-028) 63042758-63071222 protein_coding
ENST00000559831 (TPM1-029) 63044141-63062598 nonsense_mediated_decay
ENST00000560131 (TPM1-026) 63063804-63066093 retained_intron
ENST00000560445 (TPM1-019) 63042747-63066176 protein_coding
ENST00000560615 (TPM1-022) 63048813-63062277 protein_coding
ENST00000560679 (TPM1-024) 63054449-63059590 protein_coding
ENST00000560959 (TPM1-014) 63048562-63062892 protein_coding
ENST00000560970 (TPM1-003) 63042888-63066093 protein_coding
ENST00000560975 (TPM1-007) 63042684-63071323 retained_intron
ENST00000561242 (TPM1-032) 63061234-63062332 retained_intron
ENST00000561266 (TPM1-027) 63043776-63064146 protein_coding
ENST00000561395 (TPM1-033) 63057006-63066091 nonsense_mediated_decay
ENST00000561425 (TPM1-020) 63042751-63057010 nonsense_mediated_decay
ENST00000610733 (TPM1-034) 63042687-63047726 protein_coding
ENSG00000171914 (TLN2)
talin 2 		ENST00000306829 (TLN2-201) 62647311-62844631 protein_coding
ENST00000467297 (TLN2-006) 62763226-62766359 retained_intron
ENST00000472902 (TLN2-003) 62758590-62784838 protein_coding
ENST00000474847 (TLN2-005) 62649999-62658174 retained_intron
ENST00000489129 (TLN2-002) 62740445-62841486 retained_intron
ENST00000494733 (TLN2-004) 62727090-62841349 protein_coding
ENST00000559174 (TLN2-010) 62835645-62840590 retained_intron
ENST00000559908 (TLN2-009) 62733902-62739545 processed_transcript
ENST00000561197 (TLN2-008) 62453592-62618430 processed_transcript
ENST00000561311 (TLN2-001) 62561365-62844631 protein_coding
ENST00000561322 (TLN2-011) 62390526-62476414 processed_transcript
ENSG00000259394 (RP11-244F12.1)
 ENST00000560358 (RP11-244F12.1-001) 62953173-62954124 processed_pseudogene
ENSG00000259458 (MGC15885)
uncharacterized protein MGC15885 		ENST00000558940 (MGC15885-001) 62637172-62645291 antisense
ENST00000560347 (MGC15885-002) 62637636-62645181 antisense
ENSG00000259627 (RP11-244F12.2)
 ENST00000558905 (RP11-244F12.2-001) 63070025-63071911 antisense
ENSG00000259727 (RP11-1069G10.2)
 ENST00000557900 (RP11-1069G10.2-001) 62895812-62899543 lincRNA
ENSG00000259756 (RP11-625H11.2)
 ENST00000559589 (RP11-625H11.2-001) 62682916-62690448 antisense
ENSG00000265317 (AC103740.1)
 ENST00000577415 (AC103740.1-201) 62786807-62786894 miRNA

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000502_0001ENSDARG00000033683ENSDART00000039657ENSDART00000054763CIL_000502_0002ENSG00000140416ENST00000267996ENST00000288398ENST00000317516ENST00000334895ENST00000357980ENST00000358278ENST00000403994ENST00000404484ENST00000558072ENST00000558264ENST00000558314ENST00000558347ENST00000558400ENST00000558544ENST00000558868ENST00000558910ENST00000559108ENST00000559281ENST00000559397ENST00000559556ENST00000559831ENST00000560131ENST00000560445ENST00000560615ENST00000560679ENST00000560959ENST00000560970ENST00000560975ENST00000561242ENST00000561266ENST00000561395ENST00000561425ENST00000610733ENSG00000171914ENST00000306829ENST00000467297ENST00000472902ENST00000474847ENST00000489129ENST00000494733ENST00000559174ENST00000559908ENST00000561197ENST00000561311ENST00000561322ENSG00000259394ENST00000560358ENSG00000259458ENST00000558940ENST00000560347ENSG00000259627ENST00000558905ENSG00000259727ENST00000557900ENSG00000259756ENST00000559589ENSG00000265317ENST00000577415
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000502_0001ENSDARG00000033683ENSDART00000039657ENSDART00000054763CIL_000502_0002ENSG00000140416ENST00000267996ENST00000317516ENST00000334895ENST00000358278ENST00000403994ENST00000404484ENST00000558347ENST00000558400ENST00000559397ENST00000559556ENST00000560615ENST00000560970ENST00000561266ENST00000561395ENSG00000171914ENST00000306829ENST00000472902ENST00000489129ENST00000494733ENST00000559174ENST00000561311ENST00000561322ENSG00000259394ENST00000560358ENSG00000259458ENST00000558940ENST00000560347ENSG00000259627ENST00000558905ENSG00000259727ENST00000557900ENSG00000259756ENST00000559589ENSG00000265317ENST00000577415
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000033683 ENSDART00000039657 N/A N/A N/A 6.241±0.00 N/A N/A 0.587±0.00 27.289±0.00 1.541±0.00 N/A 3852.550±0.00 N/A N/A N/A
ENSDART00000054763 N/A N/A N/A 6.274±4.03 N/A N/A 1.065±0.00 29.770±21.04 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000140416 ENST00000267996 42.146±0.00 168.608±0.00 N/A 7.965±0.00 97.883±0.00 187.550±2.70 N/A N/A 420.956±0.00 20.527±8.49 N/A 54.006±27.32 N/A 54.828±42.88
ENST00000288398 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000317516 N/A N/A N/A N/A N/A N/A N/A 14.772±0.00 N/A N/A N/A N/A N/A N/A
ENST00000334895 N/A N/A N/A 4.661±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000357980 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000358278 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.987±0.00 N/A 31.091±7.71 102.878±46.45 N/A
ENST00000403994 N/A N/A N/A N/A N/A N/A 1513.774±1266.63 N/A N/A N/A 169.140±66.05 N/A N/A N/A
ENST00000404484 24.244±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 89.972±0.00 N/A 17.327±0.00
ENST00000558072 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558264 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558314 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558347 N/A N/A N/A N/A 65.741±0.00 N/A N/A N/A N/A N/A N/A 49.911±0.00 170.295±0.00 N/A
ENST00000558400 N/A N/A 32.372±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558544 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558910 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559108 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559281 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559397 28.590±0.00 N/A 10.847±0.00 N/A N/A N/A N/A 15.557±10.61 N/A 22.949±0.00 N/A 40.875±0.00 89.631±16.66 52.941±0.00
ENST00000559556 N/A N/A N/A N/A N/A N/A 136.165±0.00 N/A N/A 38.775±0.00 N/A 84.134±0.00 N/A N/A
ENST00000559831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560131 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560615 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 177.377±0.00 360.958±0.00 N/A
ENST00000560679 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560959 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560970 N/A N/A N/A N/A 125.964±0.00 N/A 104.408±0.00 N/A N/A N/A 172.833±0.00 N/A N/A N/A
ENST00000560975 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561242 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561266 N/A N/A N/A 8.168±0.00 211.722±0.00 N/A 112.229±0.00 N/A 344.767±0.00 17.983±0.00 269.036±0.00 N/A N/A N/A
ENST00000561395 N/A N/A N/A N/A N/A N/A 839.375±0.00 N/A N/A N/A 59.156±0.00 N/A N/A N/A
ENST00000561425 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000610733 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000171914 ENST00000306829 3.202±0.00 0.283±0.00 N/A 4.911±0.83 4.556±0.00 1.627±0.68 3.211±0.00 0.387±0.00 N/A 0.425±0.00 1.544±0.61 0.570±0.10 0.267±0.00 1.464±0.06
ENST00000467297 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472902 N/A N/A 8.793±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474847 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489129 N/A N/A 1.812±0.00 N/A N/A 2.291±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494733 6.958±0.00 0.499±0.00 2.543±0.00 5.765±2.64 7.074±5.21 2.984±0.00 4.572±0.00 13.914±0.00 1.346±0.00 0.925±0.00 1.978±0.29 1.503±0.23 1.069±0.29 3.930±0.06
ENST00000559174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.033±0.00 4.013±0.00 N/A
ENST00000559908 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561197 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561311 1.516±0.00 0.324±0.00 N/A N/A 2.717±1.42 N/A 1.482±0.18 N/A 1.181±0.00 0.439±0.00 N/A 0.647±0.22 0.257±0.03 N/A
ENST00000561322 2.248±0.00 0.196±0.00 N/A 1.511±0.00 0.411±0.04 1.006±0.00 0.198±0.00 N/A N/A N/A N/A 0.453±0.00 N/A N/A
ENSG00000259394 ENST00000560358 0.333±0.00 0.119±0.00 N/A N/A 0.124±0.00 0.134±0.00 0.232±0.00 0.167±0.00 0.093±0.05 0.115±0.01 0.672±0.00 0.053±0.01 0.149±0.00 0.262±0.05
ENSG00000259458 ENST00000558940 N/A N/A N/A N/A 0.070±0.04 N/A 0.072±0.00 N/A N/A N/A N/A 0.134±0.12 N/A 0.055±0.01
ENST00000560347 0.049±0.00 N/A 0.087±0.00 0.113±0.00 0.055±0.00 N/A 0.047±0.00 N/A 0.206±0.00 N/A N/A N/A N/A N/A
ENSG00000259627 ENST00000558905 38.140±0.00 108.449±0.00 N/A 17.167±0.00 N/A 264.599±0.00 N/A 47.385±0.00 8.905±0.00 30.002±0.00 N/A 82.509±0.00 105.572±7.77 81.179±0.00
ENSG00000259727 ENST00000557900 N/A 0.020±0.00 N/A N/A N/A 0.195±0.00 0.143±0.08 0.232±0.00 0.077±0.00 N/A N/A 0.034±0.01 0.104±0.09 0.027±0.00
ENSG00000259756 ENST00000559589 0.094±0.00 0.300±0.00 N/A 0.107±0.00 0.137±0.00 0.032±0.00 0.031±0.00 0.256±0.08 N/A 0.163±0.00 0.117±0.00 0.209±0.00 0.104±0.01 1.039±0.01
ENSG00000265317 ENST00000577415 0.252±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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