C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00050M_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000072756-ENSG00000113851 CGP 9606 3:3126916-3179710
GeneTranscriptPositionBiotype
ENSG00000072756 (TRNT1)
tRNA nucleotidyl transferase, CCA-adding, 1 		ENST00000251607 (TRNT1-001) 3126916-3149023 protein_coding
ENST00000280591 (TRNT1-004) 3126952-3149023 protein_coding
ENST00000339437 (TRNT1-003) 3126951-3130679 protein_coding
ENST00000397779 (TRNT1-011) 3129040-3137362 nonsense_mediated_decay
ENST00000402675 (TRNT1-002) 3127020-3130679 protein_coding
ENST00000413000 (TRNT1-008) 3127020-3137297 protein_coding
ENST00000420393 (TRNT1-007) 3126980-3130214 protein_coding
ENST00000434583 (TRNT1-010) 3126965-3150879 nonsense_mediated_decay
ENST00000465998 (TRNT1-006) 3126954-3129496 retained_intron
ENST00000469632 (TRNT1-009) 3127061-3131752 processed_transcript
ENST00000482311 (TRNT1-012) 3129155-3140728 retained_intron
ENSG00000113851 (CRBN)
cereblon 		ENST00000231948 (CRBN-001) 3150011-3179710 protein_coding
ENST00000424814 (CRBN-005) 3150011-3179674 protein_coding
ENST00000432408 (CRBN-004) 3150011-3179710 protein_coding
ENST00000450014 (CRBN-010) 3167430-3179674 protein_coding
ENST00000459840 (CRBN-009) 3150860-3154970 retained_intron
ENST00000478353 (CRBN-011) 3173887-3179704 retained_intron
ENST00000480249 (CRBN-008) 3156090-3174121 retained_intron
ENST00000482844 (CRBN-007) 3154550-3172923 retained_intron
ENST00000488263 (CRBN-006) 3150011-3156784 retained_intron
ENST00000491834 (CRBN-003) 3148992-3179691 retained_intron
ENST00000492178 (CRBN-014) 3172717-3175250 retained_intron
ENST00000498442 (CRBN-013) 3150988-3154192 retained_intron
ENST00000498700 (CRBN-012) 3172176-3179701 retained_intron
CIL_00050M_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000013736-ENSMUSG00000005362 CGP 10090 6:106769120-106800074
GeneTranscriptPositionBiotype
ENSMUSG00000005362 (Crbn)
cereblon 		ENSMUST00000013882 (Crbn-002) 106780201-106800065 protein_coding
ENSMUST00000049675 (Crbn-003) 106778249-106800069 protein_coding
ENSMUST00000113239 (Crbn-001) 106780201-106800074 protein_coding
ENSMUST00000147087 (Crbn-004) 106788748-106800061 retained_intron
ENSMUST00000151484 (Crbn-005) 106783470-106799033 processed_transcript
ENSMUSG00000013736 (Trnt1)
tRNA nucleotidyl transferase, CCA-adding, 1 		ENSMUST00000057578 (Trnt1-001) 106769166-106782474 protein_coding
ENSMUST00000113247 (Trnt1-002) 106769120-106777681 protein_coding
ENSMUST00000113248 (Trnt1-004) 106769166-106781654 protein_coding
ENSMUST00000113249 (Trnt1-003) 106769141-106781871 protein_coding
ENSMUST00000147084 (Trnt1-005) 106769170-106770164 processed_transcript
ENSMUST00000154026 (Trnt1-006) 106769213-106773055 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00050M_0001ENSG00000072756ENST00000251607ENST00000280591ENST00000339437ENST00000397779ENST00000402675ENST00000413000ENST00000420393ENST00000434583ENST00000465998ENST00000469632ENST00000482311ENSG00000113851ENST00000231948ENST00000424814ENST00000432408ENST00000450014ENST00000459840ENST00000478353ENST00000480249ENST00000482844ENST00000488263ENST00000491834ENST00000492178ENST00000498442ENST00000498700CIL_00050M_0002ENSMUSG00000005362ENSMUST00000013882ENSMUST00000049675ENSMUST00000113239ENSMUST00000147087ENSMUST00000151484ENSMUSG00000013736ENSMUST00000057578ENSMUST00000113247ENSMUST00000113248ENSMUST00000113249ENSMUST00000147084ENSMUST00000154026
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00050M_0001ENSG00000072756ENST00000251607ENST00000280591ENST00000434583ENST00000482311ENSG00000113851ENST00000231948ENST00000432408ENST00000450014ENST00000488263ENST00000491834ENST00000492178ENST00000498700CIL_00050M_0002ENSMUSG00000005362ENSMUST00000013882ENSMUST00000049675ENSMUST00000113239ENSMUST00000151484ENSMUSG00000013736ENSMUST00000057578ENSMUST00000113248ENSMUST00000113249ENSMUST00000154026
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000072756 ENST00000251607 2.825±0.00 N/A N/A 3.284±0.47 2.817±0.00 4.097±1.06 2.361±0.76 4.232±2.56 2.333±0.33 2.398±0.41 1.835±0.00 3.300±0.66 3.032±0.33 4.967±0.00
ENST00000280591 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.180±0.00 N/A N/A N/A N/A
ENST00000339437 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000397779 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000402675 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000413000 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000420393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434583 N/A N/A 2.066±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 3.633±0.62 N/A N/A
ENST00000465998 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469632 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482311 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.974±0.00 11.963±0.00 40.014±0.00
ENSG00000113851 ENST00000231948 5.978±0.00 10.343±0.00 3.381±0.00 11.143±2.03 7.445±0.95 7.792±3.74 4.806±2.76 N/A 4.073±0.34 4.289±1.63 7.437±0.00 5.274±2.41 5.513±1.00 16.752±1.34
ENST00000424814 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000432408 N/A N/A N/A N/A N/A N/A N/A 9.419±0.00 N/A 4.339±0.00 2.200±0.00 N/A N/A N/A
ENST00000450014 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.276±0.00 N/A N/A N/A
ENST00000459840 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482844 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488263 N/A N/A 1.358±0.00 N/A N/A N/A N/A N/A N/A 2.662±0.00 N/A N/A N/A N/A
ENST00000491834 0.663±0.00 2.084±0.00 N/A 1.737±0.00 2.812±0.00 N/A 0.822±0.00 1.353±0.00 1.806±0.00 1.142±0.00 N/A 1.091±0.00 N/A N/A
ENST00000492178 N/A N/A N/A 24.383±0.00 N/A N/A 9.692±0.00 N/A 14.912±0.00 15.900±0.00 N/A N/A 8.089±0.00 46.647±0.00
ENST00000498442 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498700 N/A N/A N/A N/A N/A N/A N/A 5.255±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005362 ENSMUST00000013882 3.107±0.40 5.722±1.05 4.419±0.00 3.657±0.00 4.634±1.53 2.504±0.92 2.388±0.00 4.960±0.00 3.227±0.93 4.932±0.67 5.518±0.48 4.579±1.83 3.874±0.48 6.203±1.34
ENSMUST00000049675 2.736±0.97 5.029±1.22 5.697±0.19 5.493±0.64 3.615±0.84 2.367±0.71 2.996±1.04 5.010±0.52 3.896±0.98 3.937±0.65 3.809±1.14 3.882±1.65 3.674±1.13 N/A
ENSMUST00000113239 4.522±0.98 4.968±0.60 7.503±0.00 3.713±0.00 2.947±0.30 2.816±0.02 3.543±0.67 5.268±1.01 4.511±1.21 4.656±1.17 5.532±0.00 6.339±2.53 5.981±0.26 10.893±2.37
ENSMUST00000147087 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151484 N/A 9.346±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.643±0.00 N/A 32.345±0.00
ENSMUSG00000013736 ENSMUST00000057578 4.204±1.25 7.566±2.55 7.503±0.06 8.839±1.20 5.105±0.84 3.696±1.34 3.725±0.32 5.190±0.51 6.682±3.50 6.049±0.12 3.775±1.05 6.806±4.00 9.585±5.55 11.082±1.64
ENSMUST00000113247 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000113248 N/A 6.160±0.00 N/A 10.928±0.00 N/A N/A N/A N/A 3.928±0.00 N/A 3.977±0.00 3.491±0.53 N/A 14.315±0.00
ENSMUST00000113249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.676±0.09 N/A
ENSMUST00000147084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154026 N/A 12.812±3.18 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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