C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00050Z_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000078983-ENSDARG00000061124 CGP 7955 18:43212449-43264510
GeneTranscriptPositionBiotype
ENSDARG00000061124 (srpr)
signal recognition particle receptor (docking protein) 		ENSDART00000086823 (srpr-001) 43242828-43264510 protein_coding
ENSDARG00000078983 (fam118b)
family with sequence similarity 118, member B 		ENSDART00000110229 (fam118b-201) 43213721-43241077 protein_coding
ENSDART00000135116 (fam118b-002) 43212547-43218650 retained_intron
ENSDART00000135882 (fam118b-003) 43232162-43237401 processed_transcript
ENSDART00000139526 (fam118b-001) 43212449-43236731 protein_coding
CIL_00050Z_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000197798-ENSG00000182934 CGP 9606 11:126211414-126269144
GeneTranscriptPositionBiotype
ENSG00000110074 (FOXRED1)
FAD-dependent oxidoreductase domain containing 1 		ENST00000263578 (FOXRED1-002) 126269133-126278124 protein_coding
ENST00000524751 (FOXRED1-019) 126269194-126275349 retained_intron
ENST00000525083 (FOXRED1-004) 126269171-126277663 retained_intron
ENST00000525770 (FOXRED1-005) 126269171-126277840 nonsense_mediated_decay
ENST00000526366 (FOXRED1-011) 126269192-126275012 processed_transcript
ENST00000526525 (FOXRED1-012) 126269171-126273309 retained_intron
ENST00000527004 (FOXRED1-003) 126269190-126278069 nonsense_mediated_decay
ENST00000527875 (FOXRED1-015) 126273089-126275143 retained_intron
ENST00000529802 (FOXRED1-009) 126269157-126271881 retained_intron
ENST00000530642 (FOXRED1-008) 126273914-126278126 retained_intron
ENST00000531257 (FOXRED1-018) 126273034-126274089 retained_intron
ENST00000532101 (FOXRED1-010) 126269201-126275867 retained_intron
ENST00000532125 (FOXRED1-001) 126269209-126277931 protein_coding
ENST00000532590 (FOXRED1-017) 126276912-126277844 retained_intron
ENST00000533395 (FOXRED1-016) 126273091-126276219 retained_intron
ENST00000533839 (FOXRED1-013) 126269055-126276477 processed_transcript
ENST00000534011 (FOXRED1-006) 126269135-126278131 processed_transcript
ENST00000534315 (FOXRED1-007) 126270945-126278126 retained_intron
ENSG00000165526 (RPUSD4)
RNA pseudouridylate synthase domain containing 4 		ENST00000298317 (RPUSD4-001) 126202094-126211692 protein_coding
ENST00000525812 (RPUSD4-005) 126209551-126211297 retained_intron
ENST00000526942 (RPUSD4-003) 126202782-126211629 retained_intron
ENST00000530036 (RPUSD4-008) 126205719-126209723 processed_transcript
ENST00000530903 (RPUSD4-009) 126203322-126206512 retained_intron
ENST00000532674 (RPUSD4-006) 126204325-126211692 protein_coding
ENST00000532800 (RPUSD4-007) 126209040-126211630 retained_intron
ENST00000533628 (RPUSD4-002) 126202414-126211646 protein_coding
ENST00000534393 (RPUSD4-004) 126205571-126211407 processed_transcript
ENSG00000182934 (SRPR)
signal recognition particle receptor (docking protein) 		ENST00000332118 (SRPR-001) 126262919-126268959 protein_coding
ENST00000527817 (SRPR-004) 126265080-126266401 retained_intron
ENST00000528744 (SRPR-003) 126267174-126268920 retained_intron
ENST00000530680 (SRPR-008) 126267578-126269144 processed_transcript
ENST00000531104 (SRPR-005) 126265021-126265657 retained_intron
ENST00000532259 (SRPR-002) 126263474-126268982 protein_coding
ENST00000532268 (SRPR-006) 126263841-126264755 retained_intron
ENSG00000222067 (RNU4-86P)
RNA, U4 small nuclear 86, pseudogene 		ENST00000410135 (RNU4-86P-201) 126214260-126214478 snRNA
ENSG00000240098 (RN7SL351P)
RNA, 7SL, cytoplasmic 351, pseudogene 		ENST00000469306 (RN7SL351P-201) 126245035-126245282 misc_RNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00050Z_0001ENSDARG00000061124ENSDART00000086823ENSDARG00000078983ENSDART00000110229ENSDART00000135116ENSDART00000135882ENSDART00000139526CIL_00050Z_0002ENSG00000110074ENST00000263578ENST00000524751ENST00000525083ENST00000525770ENST00000526366ENST00000526525ENST00000527004ENST00000527875ENST00000529802ENST00000530642ENST00000531257ENST00000532101ENST00000532125ENST00000532590ENST00000533395ENST00000533839ENST00000534011ENST00000534315ENSG00000165526ENST00000298317ENST00000525812ENST00000526942ENST00000530036ENST00000530903ENST00000532674ENST00000532800ENST00000533628ENST00000534393ENSG00000182934ENST00000332118ENST00000527817ENST00000528744ENST00000530680ENST00000531104ENST00000532259ENST00000532268ENSG00000222067ENST00000410135ENSG00000240098ENST00000469306
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00050Z_0001ENSDARG00000061124ENSDART00000086823ENSDARG00000078983ENSDART00000110229ENSDART00000139526CIL_00050Z_0002ENSG00000110074ENST00000263578ENSG00000165526ENST00000298317ENST00000533628ENSG00000182934ENST00000332118ENST00000527817ENST00000530680ENST00000532259ENSG00000222067ENST00000410135ENSG00000240098ENST00000469306
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000061124 ENSDART00000086823 N/A N/A N/A 15.805±4.42 N/A N/A 12.217±4.36 15.571±4.06 15.414±0.00 N/A 12.866±0.00 N/A N/A N/A
ENSDARG00000078983 ENSDART00000110229 N/A N/A N/A 2.194±0.78 N/A N/A 2.313±0.57 1.619±0.52 0.752±0.00 N/A 0.729±0.00 N/A N/A N/A
ENSDART00000135116 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000135882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000139526 N/A N/A N/A N/A N/A N/A N/A N/A 0.577±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000110074 ENST00000263578 N/A N/A N/A 7.557±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 22.146±0.00 N/A
ENST00000524751 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525770 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526366 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526525 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527004 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527875 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529802 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530642 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531257 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532101 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532125 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532590 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533839 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534011 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534315 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000165526 ENST00000298317 N/A N/A N/A 12.554±0.00 N/A 9.530±0.00 15.062±0.00 N/A 2.751±0.00 N/A 5.596±0.00 16.540±0.00 N/A N/A
ENST00000525812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526942 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530903 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533628 N/A N/A N/A N/A 12.735±0.00 N/A N/A N/A N/A N/A 26.708±0.00 30.868±0.00 N/A 33.484±0.00
ENST00000534393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000182934 ENST00000332118 38.699±0.00 62.895±0.00 8.696±0.00 15.102±6.76 18.521±8.11 19.594±9.24 17.037±12.58 44.459±16.85 30.824±27.07 39.226±28.59 28.353±20.18 44.672±15.60 40.622±7.23 48.343±16.19
ENST00000527817 N/A N/A N/A N/A 30.618±0.00 N/A N/A N/A N/A 31.026±0.00 N/A N/A N/A N/A
ENST00000528744 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530680 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 169.765±0.00 138.405±0.00 N/A
ENST00000531104 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532259 22.804±0.00 N/A N/A N/A 12.672±0.00 10.742±0.00 N/A N/A N/A N/A N/A 29.985±0.00 17.734±0.00 N/A
ENST00000532268 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000222067 ENST00000410135 0.278±0.00 1.280±0.00 N/A 0.656±0.00 0.196±0.00 N/A 0.051±0.00 0.052±0.00 N/A 0.045±0.00 N/A 3.174±0.00 N/A 0.097±0.00
ENSG00000240098 ENST00000469306 N/A 0.082±0.00 N/A N/A 2.744±0.00 6.628±0.00 0.241±0.01 0.425±0.00 N/A 1.657±0.00 N/A 0.299±0.00 N/A 0.252±0.18

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