C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00051C_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100836-ENSG00000092096 CGP 9606 14:23321289-23352912
GeneTranscriptPositionBiotype
ENSG00000092096 (SLC22A17)
solute carrier family 22, member 17 		ENST00000206544 (SLC22A17-003) 23346318-23352551 protein_coding
ENST00000354772 (SLC22A17-001) 23346306-23352912 protein_coding
ENST00000397260 (SLC22A17-005) 23346314-23352860 protein_coding
ENST00000397267 (SLC22A17-201) 23346314-23352912 protein_coding
ENST00000473917 (SLC22A17-004) 23346324-23349762 retained_intron
ENST00000474057 (SLC22A17-002) 23346316-23352908 processed_transcript
ENST00000474774 (SLC22A17-006) 23347159-23348221 processed_transcript
ENST00000556803 (SLC22A17-007) 23350919-23352043 retained_intron
ENST00000557699 (SLC22A17-008) 23348627-23352576 retained_intron
ENSG00000100836 (PABPN1)
poly(A) binding protein, nuclear 1 		ENST00000216727 (PABPN1-001) 23321289-23326185 protein_coding
ENST00000397276 (PABPN1-003) 23321457-23326163 protein_coding
ENST00000553960 (PABPN1-008) 23323263-23324645 retained_intron
ENST00000554062 (PABPN1-007) 23322539-23324217 retained_intron
ENST00000555295 (PABPN1-009) 23323445-23325334 protein_coding
ENST00000556809 (PABPN1-005) 23321814-23323485 retained_intron
ENST00000556821 (PABPN1-004) 23321543-23325298 protein_coding
ENST00000557702 (PABPN1-006) 23322022-23324378 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_00051C_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022194-ENSMUSG00000022199 CGP 10090 14:54892500-54913132
GeneTranscriptPositionBiotype
ENSMUSG00000022194 (Pabpn1)
poly(A) binding protein, nuclear 1 		ENSMUST00000022808 (Pabpn1-001) 54894148-54898169 protein_coding
ENSMUST00000116476 (Pabpn1-003) 54894148-54898156 protein_coding
ENSMUST00000139985 (Pabpn1-006) 54894602-54897399 protein_coding
ENSMUST00000140691 (Pabpn1-004) 54892500-54897183 protein_coding
ENSMUST00000141446 (Pabpn1-005) 54894573-54897557 protein_coding
ENSMUST00000146271 (Pabpn1-007) 54894833-54895890 protein_coding
ENSMUST00000150975 (Pabpn1-002) 54894155-54898096 protein_coding
ENSMUST00000172557 (Pabpn1-009) 54894618-54898134 protein_coding
ENSMUST00000172695 (Pabpn1-008) 54894156-54898056 nonsense_mediated_decay
ENSMUSG00000022199 (Slc22a17)
solute carrier family 22 (organic cation transporter), member 17 		ENSMUST00000050772 (Slc22a17-201) 54906727-54913132 protein_coding
ENSMUSG00000092232 (Gm20521)
predicted gene 20521 		ENSMUST00000134077 (Gm20521-001) 54883441-54898137 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00051C_0001ENSG00000092096ENST00000206544ENST00000354772ENST00000397260ENST00000397267ENST00000473917ENST00000474057ENST00000474774ENST00000556803ENST00000557699ENSG00000100836ENST00000216727ENST00000397276ENST00000553960ENST00000554062ENST00000555295ENST00000556809ENST00000556821ENST00000557702CIL_00051C_0002ENSMUSG00000022194ENSMUST00000022808ENSMUST00000116476ENSMUST00000139985ENSMUST00000140691ENSMUST00000141446ENSMUST00000146271ENSMUST00000150975ENSMUST00000172557ENSMUST00000172695ENSMUSG00000022199ENSMUST00000050772ENSMUSG00000092232ENSMUST00000134077
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00051C_0001ENSG00000092096ENST00000206544ENST00000354772ENST00000397260ENST00000397267ENST00000473917ENST00000474057ENST00000556803ENSG00000100836ENST00000216727ENST00000397276ENST00000555295ENST00000556821ENST00000557702CIL_00051C_0002ENSMUSG00000022194ENSMUST00000022808ENSMUST00000116476ENSMUST00000150975ENSMUST00000172557ENSMUST00000172695ENSMUSG00000022199ENSMUST00000050772ENSMUSG00000092232ENSMUST00000134077
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000092096 ENST00000206544 N/A N/A N/A N/A N/A N/A 0.588±0.00 0.098±0.00 N/A N/A N/A 4.107±2.42 N/A N/A
ENST00000354772 3.384±0.00 13.245±0.00 N/A 87.217±52.00 5.718±0.00 10.313±9.59 1.884±1.46 6.369±0.00 1.707±1.15 5.975±4.57 0.554±0.00 13.723±10.11 8.406±0.81 12.100±1.98
ENST00000397260 1.501±0.00 4.453±0.00 2.712±0.00 40.416±0.00 2.411±0.00 7.784±0.00 1.423±0.00 3.879±0.00 0.649±0.00 4.404±0.00 1.644±0.00 N/A N/A 11.381±0.00
ENST00000397267 N/A N/A N/A 5.072±0.00 N/A 3.604±0.00 N/A 6.268±0.00 N/A N/A N/A 2.472±1.58 1.105±0.00 3.306±0.00
ENST00000473917 N/A N/A N/A N/A 0.191±0.00 N/A 0.648±0.00 N/A N/A N/A 1.156±0.00 N/A N/A N/A
ENST00000474057 N/A N/A N/A N/A N/A N/A 0.223±0.00 3.021±0.00 N/A 4.513±0.00 N/A N/A N/A N/A
ENST00000474774 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556803 N/A N/A 1.541±0.00 N/A N/A N/A N/A 0.253±0.00 0.727±0.00 N/A N/A N/A N/A N/A
ENST00000557699 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000100836 ENST00000216727 52.412±0.00 53.423±0.00 6.745±0.00 24.408±18.12 24.034±18.09 27.248±21.04 13.862±12.05 26.231±24.22 7.816±2.61 22.226±20.33 19.944±16.60 39.907±33.63 44.533±4.91 96.009±0.00
ENST00000397276 N/A 22.282±0.00 N/A 3.726±0.00 9.664±6.08 3.260±0.00 N/A 13.438±11.52 6.241±0.00 9.924±7.61 N/A 24.746±4.52 13.609±3.46 76.311±0.00
ENST00000553960 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554062 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555295 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 221.710±0.00 258.600±0.00 541.818±0.00
ENST00000556809 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556821 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 50.813±0.00 N/A N/A
ENST00000557702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 135.725±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022194 ENSMUST00000022808 N/A N/A N/A 78.000±0.00 N/A N/A N/A N/A 29.548±1.94 N/A 18.199±1.27 91.834±0.00 70.826±35.20 192.362±145.74
ENSMUST00000116476 N/A 55.542±0.00 87.194±0.00 88.261±8.52 N/A 11.899±0.00 N/A N/A 23.912±4.42 28.833±0.00 13.319±1.53 N/A 28.197±6.32 65.053±0.00
ENSMUST00000139985 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140691 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141446 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150975 N/A N/A 37.811±0.00 58.840±0.00 35.389±0.00 17.332±4.19 N/A N/A 18.844±3.27 24.381±0.86 N/A 46.752±0.00 14.196±0.22 25.296±2.88
ENSMUST00000172557 N/A N/A N/A N/A N/A N/A N/A N/A 42.803±0.00 N/A N/A 131.923±8.27 N/A N/A
ENSMUST00000172695 N/A N/A 85.807±12.20 N/A N/A N/A N/A N/A 48.246±13.38 N/A N/A N/A 48.374±17.72 116.119±30.26
ENSMUSG00000022199 ENSMUST00000050772 11.514±6.35 30.648±2.76 39.956±13.85 123.354±68.73 8.618±3.69 2.545±0.54 1.109±0.90 8.647±1.71 0.954±0.76 6.499±3.17 0.452±0.11 25.678±14.10 5.640±1.24 1.905±1.62
ENSMUSG00000092232 ENSMUST00000134077 N/A N/A N/A N/A N/A 22.801±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

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