C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00051W_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000054606-ENSDARG00000054619 CGP 7955 5:40425682-40687225
GeneTranscriptPositionBiotype
ENSDARG00000054606 (mrpl1)
mitochondrial ribosomal protein L1 		ENSDART00000076835 (mrpl1-001) 40425682-40435021 protein_coding
ENSDARG00000054619 (fras1)
Fraser syndrome 1 		ENSDART00000076845 (fras1-201) 40486956-40686201 protein_coding
ENSDART00000097856 (fras1-202) 40500706-40686201 protein_coding
ENSDART00000137112 (fras1-001) 40514078-40687225 protein_coding
ENSDART00000144008 (fras1-002) 40648389-40651608 processed_transcript

Danio rerio Ensembl (Zv9)

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CIL_00051W_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000169288-ENSG00000138759 CGP 9606 4:77862520-78544269
GeneTranscriptPositionBiotype
ENSG00000169288 (MRPL1)
mitochondrial ribosomal protein L1 		ENST00000315567 (MRPL1-001) 77862520-77952790 protein_coding
ENST00000502384 (MRPL1-002) 77883239-77952749 protein_coding
ENST00000504901 (MRPL1-006) 77908325-77952783 protein_coding
ENST00000506674 (MRPL1-005) 77883249-77909312 processed_transcript
ENST00000511521 (MRPL1-003) 77862868-77885318 processed_transcript
ENST00000515625 (MRPL1-004) 77862830-77883498 processed_transcript
ENSG00000248117 (MINOS1P4)
mitochondrial inner membrane organizing system 1 pseudogene 4 		ENST00000515470 (MINOS1P4-001) 78379197-78379514 processed_pseudogene
ENSG00000248128 (RP11-777B9.4)
 ENST00000512633 (RP11-777B9.4-001) 78003143-78003439 processed_pseudogene
ENSG00000248640 (HNRNPA1P56)
heterogeneous nuclear ribonucleoprotein A1 pseudogene 56 		ENST00000505767 (HNRNPA1P56-001) 77987860-77988813 processed_pseudogene
ENSG00000248926 (RP11-777B9.1)
 ENST00000503825 (RP11-777B9.1-001) 77958000-77958780 processed_pseudogene
ENSG00000248956 (HMGB1P44)
high mobility group box 1 pseudogene 44 		ENST00000508597 (HMGB1P44-001) 77963940-77964511 processed_pseudogene
ENSG00000249072 (RP11-777B9.5)
 ENST00000510231 (RP11-777B9.5-001) 78008512-78008688 processed_pseudogene
ENSG00000249565 (SERBP1P5)
SERPINE1 mRNA binding protein 1 pseudogene 5 		ENST00000510079 (SERBP1P5-001) 78180866-78182046 processed_pseudogene
ENSG00000250214 (RP13-488H8.1)
 ENST00000508230 (RP13-488H8.1-001) 77864508-77864804 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00051W_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029486-ENSMUSG00000034687 CGP 10090 5:96209493-96784728
GeneTranscriptPositionBiotype
ENSMUSG00000029486 (Mrpl1)
mitochondrial ribosomal protein L1 		ENSMUST00000036437 (Mrpl1-201) 96210115-96266709 protein_coding
ENSMUST00000117766 (Mrpl1-001) 96209493-96266727 protein_coding
ENSMUST00000121477 (Mrpl1-002) 96210144-96239684 protein_coding
ENSMUSG00000034687 (Fras1)
Fraser syndrome 1 homolog (human) 		ENSMUST00000036019 (Fras1-201) 96373955-96784728 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00051W_0001ENSDARG00000054606ENSDART00000076835ENSDARG00000054619ENSDART00000076845ENSDART00000097856ENSDART00000137112ENSDART00000144008CIL_00051W_0002ENSG00000169288ENST00000315567ENST00000502384ENST00000504901ENST00000506674ENST00000511521ENST00000515625ENSG00000248117ENST00000515470ENSG00000248128ENST00000512633ENSG00000248640ENST00000505767ENSG00000248926ENST00000503825ENSG00000248956ENST00000508597ENSG00000249072ENST00000510231ENSG00000249565ENST00000510079ENSG00000250214ENST00000508230CIL_00051W_0003ENSMUSG00000029486ENSMUST00000036437ENSMUST00000117766ENSMUST00000121477ENSMUSG00000034687ENSMUST00000036019
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00051W_0001ENSDARG00000054606ENSDART00000076835ENSDARG00000054619ENSDART00000076845ENSDART00000097856ENSDART00000137112CIL_00051W_0002ENSG00000169288ENST00000315567ENST00000502384ENST00000504901ENST00000506674ENST00000511521ENST00000515625ENSG00000248117ENST00000515470ENSG00000248128ENST00000512633ENSG00000248640ENST00000505767ENSG00000248926ENST00000503825ENSG00000248956ENST00000508597ENSG00000249072ENST00000510231ENSG00000249565ENST00000510079ENSG00000250214ENST00000508230CIL_00051W_0003ENSMUSG00000029486ENSMUST00000036437ENSMUST00000117766ENSMUST00000121477ENSMUSG00000034687ENSMUST00000036019
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000054606 ENSDART00000076835 N/A N/A N/A 9.266±2.10 N/A N/A 3.961±3.01 13.002±0.00 0.505±0.00 N/A 1.399±0.00 N/A N/A N/A
ENSDARG00000054619 ENSDART00000076845 N/A N/A N/A N/A N/A N/A N/A N/A 0.020±0.00 N/A 0.184±0.00 N/A N/A N/A
ENSDART00000097856 N/A N/A N/A 0.280±0.00 N/A N/A 0.098±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000137112 N/A N/A N/A 0.162±0.00 N/A N/A 0.237±0.15 0.398±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000144008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000169288 ENST00000315567 3.556±0.00 6.870±0.00 0.262±0.00 5.261±1.95 3.155±2.44 4.356±3.06 5.330±3.19 5.643±1.93 3.794±0.51 1.707±0.07 4.989±0.00 4.331±2.81 2.856±0.11 2.837±1.98
ENST00000502384 N/A 2.183±0.00 N/A N/A N/A 1.640±0.00 3.255±0.00 3.823±0.00 3.977±0.00 N/A N/A 2.372±1.49 2.101±0.00 N/A
ENST00000504901 N/A N/A 2.244±0.00 N/A 5.497±0.00 N/A N/A N/A 4.671±0.00 1.721±0.00 N/A 6.940±5.22 3.009±0.00 1.308±0.00
ENST00000506674 0.863±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.769±0.00 N/A 4.413±0.00 2.774±0.00 3.061±0.00
ENST00000511521 N/A N/A N/A N/A N/A 1.192±0.00 N/A N/A N/A N/A N/A N/A N/A 2.932±0.00
ENST00000515625 N/A N/A N/A 4.963±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000248117 ENST00000515470 N/A N/A 0.274±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000248128 ENST00000512633 N/A N/A N/A 0.098±0.00 N/A N/A 0.045±0.00 0.088±0.00 N/A N/A N/A N/A N/A 0.129±0.00
ENSG00000248640 ENST00000505767 0.028±0.00 0.101±0.00 N/A 0.059±0.00 0.087±0.00 0.027±0.00 N/A 0.058±0.00 0.026±0.00 0.014±0.00 0.051±0.00 0.015±0.00 0.020±0.00 0.039±0.00
ENSG00000248926 ENST00000503825 N/A 0.043±0.00 N/A N/A N/A N/A N/A 0.120±0.00 N/A 0.226±0.00 N/A 0.139±0.11 N/A 0.022±0.00
ENSG00000248956 ENST00000508597 0.065±0.00 0.023±0.00 N/A 0.023±0.00 N/A 0.021±0.00 0.042±0.00 0.136±0.00 N/A N/A 0.020±0.00 0.161±0.00 N/A N/A
ENSG00000249072 ENST00000510231 0.230±0.00 N/A N/A 0.680±0.00 0.071±0.00 1.137±0.00 0.272±0.00 0.436±0.00 0.059±0.00 N/A 0.448±0.00 N/A N/A N/A
ENSG00000249565 ENST00000510079 0.026±0.00 N/A 0.175±0.00 0.045±0.03 0.068±0.00 0.039±0.03 0.047±0.00 0.015±0.00 0.013±0.00 N/A 0.352±0.30 0.083±0.00 0.037±0.00 2.403±2.07
ENSG00000250214 ENST00000508230 N/A N/A 0.405±0.00 N/A N/A N/A N/A N/A N/A 1.719±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029486 ENSMUST00000036437 2.174±0.06 3.108±1.09 3.232±0.28 2.524±0.87 1.948±0.39 1.933±0.22 3.041±0.14 4.109±0.27 4.156±0.48 0.975±0.19 4.292±0.32 3.266±0.91 3.235±1.37 2.886±0.96
ENSMUST00000117766 N/A N/A N/A N/A N/A 0.539±0.00 N/A N/A 0.888±0.00 N/A N/A 1.143±0.12 N/A 1.530±0.00
ENSMUST00000121477 N/A N/A N/A N/A N/A 0.568±0.00 N/A N/A N/A 0.370±0.00 2.580±0.00 N/A 1.878±0.70 3.201±0.72
ENSMUSG00000034687 ENSMUST00000036019 0.517±0.41 0.255±0.05 1.150±0.34 0.993±0.31 0.128±0.06 0.216±0.04 0.230±0.12 1.876±0.50 0.201±0.11 0.907±0.36 0.300±0.05 1.246±0.44 1.061±1.27 0.116±0.03

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