C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000526_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000131050-ENSG00000131059 CGP 9606 20:33161768-33227758
GeneTranscriptPositionBiotype
ENSG00000131059 (BPIFA3)
BPI fold containing family A, member 3 		ENST00000375452 (BPIFA3-004) 33217352-33227758 protein_coding
ENST00000375454 (BPIFA3-003) 33217327-33227758 protein_coding
ENST00000471233 (BPIFA3-001) 33217327-33227758 processed_transcript
ENST00000490499 (BPIFA3-002) 33217310-33227758 processed_transcript
ENSG00000183566 (BPIFA4P)
BPI fold containing family A, member 4, pseudogene 		ENST00000375465 (BPIFA4P-003) 33193605-33210462 processed_transcript
ENST00000420169 (BPIFA4P-002) 33198209-33205169 processed_transcript
ENST00000603168 (BPIFA4P-001) 33198212-33207741 unitary_pseudogene
ENST00000605211 (BPIFA4P-004) 33193585-33198796 retained_intron
ENSG00000224876 (RP11-49G10.3)
 ENST00000419613 (RP11-49G10.3-001) 33214920-33217067 antisense
ENSG00000237662 (SOCS2P1)
suppressor of cytokine signaling 2 pseudogene 1 		ENST00000417727 (SOCS2P1-001) 33187391-33188292 processed_pseudogene
CIL_000526_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000042459-ENSMUSG00000027482 CGP 10090 2:154008265-154138356
GeneTranscriptPositionBiotype
ENSMUSG00000027482 (Bpifa3)
BPI fold containing family A, member 3 		ENSMUST00000028984 (Bpifa3-001) 154130336-154138356 protein_coding
ENSMUST00000109746 (Bpifa3-002) 154130336-154138356 protein_coding
ENSMUST00000125753 (Bpifa3-003) 154135544-154137619 nonsense_mediated_decay
ENSMUSG00000042459 (Bpifa2)
BPI fold containing family A, member 2 		ENSMUST00000048103 (Bpifa2-001) 154008265-154016079 protein_coding
ENSMUST00000132933 (Bpifa2-003) 154014596-154016076 retained_intron
ENSMUST00000136467 (Bpifa2-004) 154013714-154015610 retained_intron
ENSMUST00000145388 (Bpifa2-002) 154008276-154014444 protein_coding
ENSMUSG00000081013 (Gm14497)
predicted gene 14497 		ENSMUST00000119537 (Gm14497-001) 154086835-154087414 processed_pseudogene
ENSMUSG00000096084 (Gm21850)
predicted gene, 21850 		ENSMUST00000179792 (Gm21850-001) 154052269-154056639 unprocessed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdrenalBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000526_0001ENSG00000131059ENST00000375452ENST00000375454ENST00000471233ENST00000490499ENSG00000183566ENST00000375465ENST00000420169ENST00000603168ENST00000605211ENSG00000224876ENST00000419613ENSG00000237662ENST00000417727CIL_000526_0002ENSMUSG00000027482ENSMUST00000028984ENSMUST00000109746ENSMUST00000125753ENSMUSG00000042459ENSMUST00000048103ENSMUST00000132933ENSMUST00000136467ENSMUST00000145388ENSMUSG00000081013ENSMUST00000119537ENSMUSG00000096084ENSMUST00000179792
Region; Gene Transcript'; AdrenalBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000526_0001ENSG00000131059ENST00000375452ENST00000375454ENST00000471233ENSG00000183566ENST00000375465ENST00000605211ENSG00000224876ENST00000419613ENSG00000237662ENST00000417727CIL_000526_0002ENSMUSG00000027482ENSMUST00000028984ENSMUST00000109746ENSMUST00000125753ENSMUSG00000042459ENSMUST00000048103ENSMUST00000132933ENSMUST00000136467ENSMUST00000145388ENSMUSG00000081013ENSMUST00000119537ENSMUSG00000096084ENSMUST00000179792
Gene Transcript Adrenal Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000131059 ENST00000375452 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 21.121±0.35
ENST00000375454 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.467±0.00
ENST00000471233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 21.444±6.99
ENST00000490499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000183566 ENST00000375465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.028±0.01
ENST00000420169 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000603168 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000605211 N/A N/A N/A 0.597±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000224876 ENST00000419613 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.275±0.06
ENSG00000237662 ENST00000417727 N/A 0.089±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adrenal Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027482 ENSMUST00000028984 N/A N/A 0.025±0.00 0.032±0.00 0.016±0.00 N/A N/A N/A 0.286±0.28 N/A 51.694±15.66
ENSMUST00000109746 N/A N/A 0.025±0.00 N/A 0.016±0.00 N/A N/A N/A 0.129±0.05 N/A 24.540±8.06
ENSMUST00000125753 N/A N/A N/A N/A N/A N/A N/A N/A 1.091±0.00 N/A N/A
ENSMUSG00000042459 ENSMUST00000048103 0.116±0.00 N/A 0.164±0.00 N/A N/A N/A 0.140±0.00 N/A 0.491±0.31 0.181±0.12 0.098±0.00
ENSMUST00000132933 N/A N/A N/A N/A N/A N/A N/A N/A 0.498±0.00 N/A N/A
ENSMUST00000136467 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.008±0.00 N/A
ENSMUST00000145388 N/A N/A N/A N/A N/A N/A N/A 0.035±0.00 0.444±0.00 N/A N/A
ENSMUSG00000081013 ENSMUST00000119537 0.086±0.00 0.394±0.00 0.080±0.00 N/A 0.056±0.00 0.169±0.08 N/A N/A 0.153±0.00 N/A N/A
ENSMUSG00000096084 ENSMUST00000179792 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.373±0.18

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