C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00052T_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000060526-ENSDARG00000054741 CGP 7955 5:41273227-41304179
GeneTranscriptPositionBiotype
ENSDARG00000054741 (prkg2)
protein kinase, cGMP-dependent, type II 		ENSDART00000076929 (prkg2-001) 41285722-41304179 protein_coding
ENSDARG00000060526 (bmp3)
bone morphogenetic protein 3 		ENSDART00000085388 (bmp3-001) 41273227-41279432 protein_coding
ENSDARG00000088753 (C5H4orf22)
chromosome 4 open reading frame 22 		ENSDART00000097872 (C5H4orf22-002) 41169278-41269688 protein_coding
ENSDART00000131245 (C5H4orf22-001) 41169256-41275801 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00052T_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000152785-ENSG00000138669 CGP 9606 4:81030965-81215117
GeneTranscriptPositionBiotype
ENSG00000138669 (PRKG2)
protein kinase, cGMP-dependent, type II 		ENST00000264399 (PRKG2-201) 81087370-81215117 protein_coding
ENST00000395578 (PRKG2-001) 81088683-81215034 protein_coding
ENST00000456882 (PRKG2-004) 81140628-81154144 processed_transcript
ENST00000509169 (PRKG2-002) 81089493-81154157 processed_transcript
ENST00000509474 (PRKG2-003) 81089597-81154253 processed_transcript
ENST00000545647 (PRKG2-202) 81087370-81153732 protein_coding
ENSG00000152785 (BMP3)
bone morphogenetic protein 3 		ENST00000282701 (BMP3-001) 81030965-81057531 protein_coding
ENSG00000251059 (RP11-100N20.1)
 ENST00000505175 (RP11-100N20.1-002) 81173875-81193180 antisense
ENST00000512502 (RP11-100N20.1-001) 81164940-81193395 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_00052T_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029335-ENSMUSG00000029334 CGP 10090 5:98854439-99037351
GeneTranscriptPositionBiotype
ENSMUSG00000029334 (Prkg2)
protein kinase, cGMP-dependent, type II 		ENSMUST00000031277 (Prkg2-002) 98931720-99037035 protein_coding
ENSMUST00000160765 (Prkg2-004) 98947393-98966756 retained_intron
ENSMUST00000161490 (Prkg2-001) 98929773-99037351 protein_coding
ENSMUST00000162147 (Prkg2-003) 98931268-98943834 retained_intron
ENSMUST00000162619 (Prkg2-005) 98931268-98943832 processed_transcript
ENSMUSG00000029335 (Bmp3)
bone morphogenetic protein 3 		ENSMUST00000031278 (Bmp3-201) 98854439-98880960 protein_coding
ENSMUSG00000089659 (Gm3470)
predicted gene 3470 		ENSMUST00000160819 (Gm3470-001) 99021803-99022222 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00052T_0001ENSDARG00000054741ENSDART00000076929ENSDARG00000060526ENSDART00000085388ENSDARG00000088753ENSDART00000097872ENSDART00000131245CIL_00052T_0002ENSG00000138669ENST00000264399ENST00000395578ENST00000456882ENST00000509169ENST00000509474ENST00000545647ENSG00000152785ENST00000282701ENSG00000251059ENST00000505175ENST00000512502CIL_00052T_0003ENSMUSG00000029334ENSMUST00000031277ENSMUST00000160765ENSMUST00000161490ENSMUST00000162147ENSMUST00000162619ENSMUSG00000029335ENSMUST00000031278ENSMUSG00000089659ENSMUST00000160819
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00052T_0001ENSDARG00000054741ENSDART00000076929ENSDARG00000060526ENSDART00000085388ENSDARG00000088753ENSDART00000097872CIL_00052T_0002ENSG00000138669ENST00000264399ENST00000395578ENST00000456882ENST00000509474ENST00000545647ENSG00000152785ENST00000282701ENSG00000251059ENST00000505175ENST00000512502CIL_00052T_0003ENSMUSG00000029334ENSMUST00000031277ENSMUST00000160765ENSMUST00000161490ENSMUST00000162147ENSMUST00000162619ENSMUSG00000029335ENSMUST00000031278ENSMUSG00000089659ENSMUST00000160819
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000054741 ENSDART00000076929 N/A N/A N/A 0.118±0.05 N/A N/A 0.020±0.00 0.541±0.00 N/A N/A 0.189±0.00 N/A N/A N/A
ENSDARG00000060526 ENSDART00000085388 N/A N/A N/A 1.226±0.33 N/A N/A 2.732±2.15 N/A N/A N/A 0.254±0.00 N/A N/A N/A
ENSDARG00000088753 ENSDART00000097872 N/A N/A N/A 0.918±0.18 N/A N/A N/A 2.792±2.62 N/A N/A 0.179±0.00 N/A N/A N/A
ENSDART00000131245 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138669 ENST00000264399 N/A 0.048±0.00 0.035±0.00 N/A 0.145±0.07 N/A 0.023±0.00 N/A N/A N/A N/A 0.022±0.01 0.015±0.00 0.273±0.18
ENST00000395578 N/A N/A N/A 0.121±0.00 0.170±0.00 N/A N/A N/A N/A 0.337±0.00 N/A 0.054±0.02 N/A 0.168±0.00
ENST00000456882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.078±0.00 N/A N/A
ENST00000509169 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509474 0.309±0.00 N/A 0.274±0.00 N/A 0.237±0.00 N/A N/A N/A N/A 0.336±0.00 N/A 0.193±0.00 N/A 0.299±0.00
ENST00000545647 N/A N/A 0.029±0.00 N/A N/A N/A N/A N/A N/A N/A 0.047±0.00 0.018±0.01 0.020±0.00 N/A
ENSG00000152785 ENST00000282701 0.969±0.00 0.056±0.00 0.032±0.00 0.051±0.02 0.227±0.12 2.942±1.26 0.024±0.01 0.212±0.08 0.459±0.45 1.664±1.30 0.028±0.00 0.919±1.02 0.007±0.00 0.219±0.11
ENSG00000251059 ENST00000505175 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.211±0.00
ENST00000512502 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.220±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029334 ENSMUST00000031277 N/A 0.295±0.10 N/A 2.334±0.00 0.120±0.06 N/A 0.010±0.00 0.151±0.05 0.019±0.01 0.934±0.28 0.089±0.03 0.178±0.04 0.175±0.07 0.013±0.00
ENSMUST00000160765 0.110±0.00 N/A N/A N/A 0.359±0.00 N/A N/A N/A N/A N/A N/A N/A 1.940±0.00 N/A
ENSMUST00000161490 0.188±0.15 0.682±0.04 0.171±0.01 0.570±0.51 0.111±0.06 1.956±0.77 0.039±0.01 0.091±0.02 0.011±0.01 2.397±0.59 0.103±0.05 0.298±0.20 0.431±0.36 0.009±0.00
ENSMUST00000162147 N/A N/A N/A N/A N/A N/A N/A N/A 0.004±0.00 N/A N/A N/A 0.092±0.00 N/A
ENSMUST00000162619 N/A N/A N/A N/A 0.133±0.00 N/A N/A N/A 0.085±0.00 N/A N/A N/A 0.031±0.00 N/A
ENSMUSG00000029335 ENSMUST00000031278 9.511±6.49 0.589±0.08 27.694±1.32 0.674±0.72 4.338±2.02 20.556±5.93 0.435±0.16 0.734±0.31 0.036±0.02 13.899±1.60 0.067±0.03 11.433±5.25 0.073±0.06 0.353±0.09
ENSMUSG00000089659 ENSMUST00000160819 3.875±1.65 0.516±0.24 1.031±0.11 0.086±0.06 2.258±0.85 1.765±1.19 1.776±1.29 4.074±2.28 0.374±0.31 0.776±0.16 N/A 4.411±2.66 0.165±0.01 0.337±0.05

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