C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00053R_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000053152-ENSDARG00000061832 CGP 7955 24:36678421-36777593
GeneTranscriptPositionBiotype
ENSDARG00000053152 (pcmtd1)
protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 		ENSDART00000075142 (pcmtd1-201) 36678421-36712900 protein_coding
ENSDARG00000061832 (SNTG1)
syntrophin, gamma 1 		ENSDART00000088609 (SNTG1-201) 36727536-36777593 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00053R_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000051285-ENSMUSG00000025909 CGP 10090 1:7088920-9299878
GeneTranscriptPositionBiotype
ENSMUSG00000025909 (Sntg1)
syntrophin, gamma 1 		ENSMUST00000115484 (Sntg1-006) 8363183-8470520 protein_coding
ENSMUST00000115488 (Sntg1-201) 8363475-8803943 protein_coding
ENSMUST00000126083 (Sntg1-008) 8950572-9298236 processed_transcript
ENSMUST00000132064 (Sntg1-004) 8361475-9298573 protein_coding
ENSMUST00000134075 (Sntg1-002) 8781531-9299509 retained_intron
ENSMUST00000135046 (Sntg1-007) 8363425-8470479 protein_coding
ENSMUST00000140295 (Sntg1-001) 8361475-9299238 protein_coding
ENSMUST00000140302 (Sntg1-005) 8362678-9299878 nonsense_mediated_decay
ENSMUST00000144593 (Sntg1-003) 8675973-9299282 nonsense_mediated_decay
ENSMUSG00000048538 (Gm9826)
predicted gene 9826 		ENSMUST00000029124 (Gm9826-201) 7177739-7179037 processed_pseudogene
ENSMUSG00000051285 (Pcmtd1)
protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 		ENSMUST00000061280 (Pcmtd1-001) 7088920-7173628 protein_coding
ENSMUST00000182114 (Pcmtd1-006) 7088930-7169598 protein_coding
ENSMUST00000182306 (Pcmtd1-003) 7089104-7160902 processed_transcript
ENSMUST00000182388 (Pcmtd1-007) 7154867-7163371 retained_intron
ENSMUST00000182675 (Pcmtd1-002) 7147637-7170076 nonsense_mediated_decay
ENSMUST00000182823 (Pcmtd1-008) 7089166-7172122 processed_transcript
ENSMUST00000182892 (Pcmtd1-004) 7160085-7172618 retained_intron
ENSMUST00000183204 (Pcmtd1-005) 7160557-7172659 retained_intron
ENSMUSG00000066693 (Gm7493)
predicted gene 7493 		ENSMUST00000085919 (Gm7493-001) 8962996-8963621 processed_pseudogene
ENSMUSG00000084353 (Gm15452)
predicted gene 15452 		ENSMUST00000119877 (Gm15452-001) 8791923-8792162 processed_pseudogene
ENSMUSG00000086195 (Gm6152)
predicted gene 6152 		ENSMUST00000151704 (Gm6152-001) 8855928-8856267 processed_pseudogene
ENSMUSG00000086235 (Gm16284)
predicted gene 16284 		ENSMUST00000140995 (Gm16284-001) 8468426-8468825 processed_pseudogene
ENSMUSG00000097797 (Gm26901)
predicted gene, 26901 		ENSMUST00000181554 (Gm26901-201) 7349406-7397801 lincRNA
ENSMUSG00000098201 (Gm26983)
predicted gene, 26983 		ENSMUST00000182051 (Gm26983-001) 7136199-7136586 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00053R_0001ENSDARG00000053152ENSDART00000075142ENSDARG00000061832ENSDART00000088609CIL_00053R_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00053R_0001ENSDARG00000053152ENSDART00000075142ENSDARG00000061832ENSDART00000088609CIL_00053R_0002ENSMUSG00000025909ENSMUST00000115484ENSMUST00000115488ENSMUST00000126083ENSMUST00000132064ENSMUST00000134075ENSMUST00000135046ENSMUST00000140295ENSMUST00000140302ENSMUST00000144593ENSMUSG00000048538ENSMUST00000029124ENSMUSG00000051285ENSMUST00000061280ENSMUST00000182114ENSMUST00000182823ENSMUST00000182892ENSMUST00000183204ENSMUSG00000066693ENSMUST00000085919ENSMUSG00000084353ENSMUST00000119877ENSMUSG00000086195ENSMUST00000151704ENSMUSG00000086235ENSMUST00000140995ENSMUSG00000097797ENSMUST00000181554ENSMUSG00000098201ENSMUST00000182051
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000053152 ENSDART00000075142 N/A N/A N/A 10.022±6.53 N/A N/A 4.343±2.70 1.985±0.65 0.465±0.00 N/A 17.072±0.00 N/A N/A N/A
ENSDARG00000061832 ENSDART00000088609 N/A N/A N/A 0.749±0.00 N/A N/A 0.137±0.01 0.080±0.00 N/A N/A 0.040±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025909 ENSMUST00000115484 0.070±0.00 0.369±0.13 N/A N/A 0.062±0.03 0.158±0.08 0.056±0.00 0.032±0.00 0.241±0.17 0.120±0.00 N/A 0.159±0.07 0.095±0.04 3.174±1.77
ENSMUST00000115488 0.073±0.01 0.226±0.00 0.204±0.00 3.447±0.00 0.271±0.00 N/A 0.008±0.00 0.008±0.00 0.246±0.21 0.028±0.00 N/A 0.075±0.03 0.026±0.02 0.447±0.10
ENSMUST00000126083 0.381±0.00 N/A N/A N/A 0.122±0.00 N/A N/A N/A 0.063±0.00 0.136±0.00 N/A N/A N/A N/A
ENSMUST00000132064 N/A 0.281±0.05 0.060±0.00 N/A 0.033±0.00 N/A 0.023±0.00 0.022±0.01 0.137±0.12 N/A N/A 0.104±0.16 N/A N/A
ENSMUST00000134075 0.042±0.02 N/A N/A N/A 0.008±0.00 0.039±0.02 0.033±0.00 0.013±0.00 N/A 0.022±0.00 N/A 0.096±0.00 N/A N/A
ENSMUST00000135046 N/A N/A N/A N/A N/A N/A N/A 0.247±0.00 0.607±0.00 N/A N/A N/A N/A 0.500±0.00
ENSMUST00000140295 0.058±0.00 0.153±0.00 0.022±0.00 0.536±0.01 N/A N/A N/A N/A 0.008±0.00 N/A N/A 0.033±0.01 0.011±0.00 N/A
ENSMUST00000140302 0.036±0.01 0.120±0.00 0.080±0.00 1.336±0.64 N/A N/A 0.029±0.00 N/A 0.012±0.01 N/A N/A 0.058±0.01 0.006±0.00 N/A
ENSMUST00000144593 N/A 0.192±0.00 N/A N/A 0.010±0.00 0.069±0.07 N/A N/A 0.025±0.01 N/A N/A N/A 0.005±0.00 N/A
ENSMUSG00000048538 ENSMUST00000029124 0.835±0.55 0.286±0.12 0.427±0.07 0.511±0.36 0.306±0.17 0.760±0.35 0.097±0.06 1.114±0.33 5.109±3.55 0.153±0.03 0.104±0.05 1.489±1.23 0.454±0.44 0.702±0.07
ENSMUSG00000051285 ENSMUST00000061280 4.751±0.44 4.127±1.14 12.922±0.62 6.137±0.98 4.219±1.21 2.970±0.60 4.639±0.50 5.516±0.53 4.345±1.72 5.893±0.37 11.174±0.66 3.381±1.93 2.210±0.82 0.654±0.19
ENSMUST00000182114 N/A 15.921±5.59 N/A N/A 10.511±1.58 2.029±0.07 N/A N/A N/A 3.588±0.00 N/A 3.824±1.64 N/A 1.137±0.00
ENSMUST00000182306 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182388 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182675 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182823 6.287±0.15 8.456±0.72 8.708±1.14 6.697±2.44 5.898±1.55 1.402±0.00 4.164±0.34 2.366±0.43 3.670±1.68 5.331±1.44 5.568±0.38 4.793±1.79 2.210±0.34 0.369±0.06
ENSMUST00000182892 N/A N/A 3.262±0.07 2.730±0.29 N/A 1.589±0.48 N/A 1.739±0.76 3.464±2.36 1.572±0.00 N/A 2.441±1.16 0.901±0.32 0.439±0.27
ENSMUST00000183204 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.725±0.00 0.232±0.00
ENSMUSG00000066693 ENSMUST00000085919 N/A N/A 0.237±0.02 0.329±0.19 N/A 0.201±0.00 N/A N/A 0.023±0.01 N/A N/A N/A N/A N/A
ENSMUSG00000084353 ENSMUST00000119877 N/A N/A 0.547±0.25 2.531±1.39 N/A N/A N/A N/A 10.249±7.44 N/A N/A N/A 0.559±0.41 N/A
ENSMUSG00000086195 ENSMUST00000151704 0.182±0.00 0.237±0.00 0.091±0.00 0.135±0.01 N/A 0.394±0.16 N/A N/A N/A N/A N/A N/A 0.027±0.00 N/A
ENSMUSG00000086235 ENSMUST00000140995 N/A N/A 0.051±0.02 0.063±0.03 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.594±0.18
ENSMUSG00000097797 ENSMUST00000181554 0.129±0.00 0.365±0.17 N/A 0.580±0.20 0.389±0.15 0.466±0.16 0.146±0.03 0.204±0.09 0.109±0.09 0.320±0.14 0.118±0.05 1.190±0.71 0.533±0.54 1.311±1.02
ENSMUSG00000098201 ENSMUST00000182051 0.489±0.12 N/A N/A N/A 0.674±0.44 0.530±0.00 0.141±0.00 0.296±0.00 0.255±0.10 N/A N/A 0.462±0.00 N/A 0.140±0.01

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