C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000540_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000146005-ENSG00000158458 CGP 9606 5:139795821-140043299
GeneTranscriptPositionBiotype
ENSG00000146005 (PSD2)
pleckstrin and Sec7 domain containing 2 		ENST00000274710 (PSD2-001) 139795821-139844466 protein_coding
ENSG00000158458 (NRG2)
neuregulin 2 		ENST00000289409 (NRG2-002) 139847917-140043069 protein_coding
ENST00000289422 (NRG2-012) 139847649-140043147 protein_coding
ENST00000340391 (NRG2-006) 139847917-139904397 protein_coding
ENST00000358522 (NRG2-007) 139847917-140043069 protein_coding
ENST00000361474 (NRG2-001) 139847675-140043294 protein_coding
ENST00000378238 (NRG2-011) 139851753-140043069 nonsense_mediated_decay
ENST00000518130 (NRG2-010) 139869538-139904310 processed_transcript
ENST00000519478 (NRG2-009) 139869399-139871803 processed_transcript
ENST00000541337 (NRG2-201) 139846779-140043299 protein_coding
ENSG00000207317 (Y_RNA)
Y RNA 		ENST00000384587 (Y_RNA.1-732) 140019492-140019592 misc_RNA
ENSG00000250692 (CTB-35F21.4)
 ENST00000504413 (CTB-35F21.4-001) 139848290-139856389 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_000540_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024347-ENSMUSG00000060275 CGP 10090 18:35964830-36197380
GeneTranscriptPositionBiotype
ENSMUSG00000024347 (Psd2)
pleckstrin and Sec7 domain containing 2 		ENSMUST00000115716 (Psd2-001) 35964830-36014712 protein_coding
ENSMUST00000175720 (Psd2-006) 35987019-36006084 retained_intron
ENSMUST00000175734 (Psd2-005) 35965105-36014674 protein_coding
ENSMUST00000176472 (Psd2-002) 35965102-36014580 nonsense_mediated_decay
ENSMUST00000176873 (Psd2-004) 35965065-36014712 protein_coding
ENSMUST00000177432 (Psd2-003) 35965067-36014715 protein_coding
ENSMUSG00000060275 (Nrg2)
neuregulin 2 		ENSMUST00000115705 (Nrg2-002) 36027396-36197232 protein_coding
ENSMUST00000115712 (Nrg2-003) 36017707-36197380 protein_coding
ENSMUST00000115713 (Nrg2-001) 36017707-36197380 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000540_0001ENSG00000146005ENST00000274710ENSG00000158458ENST00000289409ENST00000289422ENST00000340391ENST00000358522ENST00000361474ENST00000378238ENST00000518130ENST00000519478ENST00000541337ENSG00000207317ENST00000384587ENSG00000250692ENST00000504413CIL_000540_0002ENSMUSG00000024347ENSMUST00000115716ENSMUST00000175720ENSMUST00000175734ENSMUST00000176472ENSMUST00000176873ENSMUST00000177432ENSMUSG00000060275ENSMUST00000115705ENSMUST00000115712ENSMUST00000115713
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000540_0001ENSG00000146005ENST00000274710ENSG00000158458ENST00000289409ENST00000289422ENST00000340391ENST00000361474ENST00000378238ENST00000518130ENST00000541337ENSG00000207317ENST00000384587ENSG00000250692ENST00000504413CIL_000540_0002ENSMUSG00000024347ENSMUST00000115716ENSMUST00000175720ENSMUST00000175734ENSMUST00000176472ENSMUST00000176873ENSMUST00000177432ENSMUSG00000060275ENSMUST00000115705ENSMUST00000115712ENSMUST00000115713
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000146005 ENST00000274710 0.016±0.00 0.042±0.00 N/A 18.222±12.83 0.148±0.01 0.061±0.00 N/A 0.011±0.00 0.033±0.01 0.037±0.00 0.053±0.00 0.090±0.04 0.072±0.04 0.720±0.32
ENSG00000158458 ENST00000289409 N/A N/A N/A 0.583±0.00 N/A N/A 0.415±0.00 N/A 0.076±0.00 N/A 1.274±0.00 N/A 0.427±0.25 N/A
ENST00000289422 N/A N/A N/A N/A 0.226±0.00 N/A N/A N/A N/A 0.081±0.00 N/A N/A N/A N/A
ENST00000340391 1.817±0.00 N/A 0.283±0.00 N/A N/A 0.609±0.00 N/A 0.317±0.00 0.061±0.00 N/A 1.102±0.00 3.675±2.98 0.177±0.01 0.493±0.00
ENST00000358522 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000361474 N/A N/A N/A 0.383±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000378238 N/A 0.542±0.00 N/A N/A 1.062±0.00 0.818±0.00 N/A N/A 0.494±0.00 N/A 0.690±0.00 0.838±0.75 N/A 0.729±0.00
ENST00000518130 N/A N/A N/A 0.820±0.00 N/A N/A 0.231±0.00 N/A N/A N/A 0.651±0.00 0.194±0.00 N/A 0.973±0.00
ENST00000519478 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541337 N/A 0.349±0.00 N/A N/A N/A 0.515±0.50 0.021±0.00 N/A N/A 0.150±0.00 N/A 0.026±0.00 0.124±0.00 N/A
ENSG00000207317 ENST00000384587 N/A N/A N/A N/A 109.590±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000250692 ENST00000504413 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.459±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024347 ENSMUST00000115716 0.136±0.04 N/A 0.823±0.00 N/A N/A N/A N/A N/A 0.036±0.00 N/A N/A 0.103±0.00 N/A 0.087±0.03
ENSMUST00000175720 N/A N/A N/A N/A N/A N/A N/A 0.155±0.04 0.087±0.05 N/A N/A N/A 0.069±0.01 N/A
ENSMUST00000175734 0.480±0.10 0.052±0.00 N/A 8.307±0.00 0.512±0.03 0.160±0.02 N/A 0.073±0.03 0.027±0.00 N/A 0.043±0.00 0.222±0.15 N/A 0.160±0.00
ENSMUST00000176472 N/A 0.223±0.13 N/A 5.141±0.00 0.148±0.00 0.099±0.03 0.026±0.01 0.128±0.01 0.012±0.00 0.104±0.00 0.025±0.01 0.273±0.19 0.113±0.10 0.123±0.03
ENSMUST00000176873 N/A N/A 2.302±1.25 15.798±2.70 0.064±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177432 0.175±0.00 0.048±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000060275 ENSMUST00000115705 N/A N/A N/A 2.792±0.00 N/A N/A N/A N/A N/A N/A 0.020±0.00 3.410±0.00 0.046±0.01 N/A
ENSMUST00000115712 N/A N/A N/A 0.578±0.18 N/A N/A N/A 0.329±0.00 N/A 0.586±0.00 0.035±0.02 1.004±0.20 0.113±0.05 0.096±0.03
ENSMUST00000115713 0.861±0.77 1.270±0.41 4.621±1.48 1.499±0.32 0.422±0.37 0.965±0.20 N/A 0.107±0.04 0.079±0.06 3.040±1.17 N/A 4.743±0.73 0.127±0.00 0.163±0.00

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