C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00056C_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000069085-ENSDARG00000053884 CGP 7955 10:28659154-28799521
GeneTranscriptPositionBiotype
ENSDARG00000053884 (med13a)
mediator complex subunit 13a 		ENSDART00000088852 (med13a-201) 28711824-28798981 protein_coding
ENSDART00000134491 (med13a-001) 28711823-28799521 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00056C_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000108506-ENSG00000108510 CGP 9606 17:61865367-62065282
GeneTranscriptPositionBiotype
ENSG00000108506 (INTS2)
integrator complex subunit 2 		ENST00000251334 (INTS2-002) 61867249-61927991 protein_coding
ENST00000444766 (INTS2-001) 61865370-61928016 protein_coding
ENST00000578805 (INTS2-004) 61891577-61894186 retained_intron
ENST00000583076 (INTS2-003) 61926408-61927426 protein_coding
ENST00000583822 (INTS2-006) 61872023-61885005 retained_intron
ENST00000584967 (INTS2-005) 61877981-61885290 retained_intron
ENST00000617492 (INTS2-201) 61865367-61927105 protein_coding
ENSG00000108510 (MED13)
mediator complex subunit 13 		ENST00000397786 (MED13-001) 61942605-62065282 protein_coding
ENST00000578132 (MED13-005) 62029298-62033825 retained_intron
ENST00000580896 (MED13-004) 62031513-62032473 processed_transcript
ENST00000581994 (MED13-002) 62029277-62031489 retained_intron
ENST00000582786 (MED13-006) 61955311-61955763 retained_intron
ENST00000583958 (MED13-003) 62010427-62030000 protein_coding
ENSG00000200842 (Y_RNA)
Y RNA 		ENST00000363972 (Y_RNA.1-392) 62036833-62036945 misc_RNA
ENSG00000202361 (Y_RNA)
Y RNA 		ENST00000365491 (Y_RNA.1-560) 61874084-61874182 misc_RNA
ENSG00000221302 (AC018628.1)
 ENST00000408375 (AC018628.1-201) 62015857-62015937 miRNA
ENSG00000242398 (RN7SL800P)
RNA, 7SL, cytoplasmic 800, pseudogene 		ENST00000484823 (RN7SL800P-201) 62005737-62006016 misc_RNA
ENSG00000279133 (RP11-342K2.1)
 ENST00000624147 (RP11-342K2.1-001) 62003700-62007518 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_00056C_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000018068-ENSMUSG00000034297 CGP 10090 11:86210681-86357602
GeneTranscriptPositionBiotype
ENSMUSG00000018068 (Ints2)
integrator complex subunit 2 		ENSMUST00000018212 (Ints2-001) 86210681-86257550 protein_coding
ENSMUST00000108039 (Ints2-002) 86212088-86256546 protein_coding
ENSMUST00000127745 (Ints2-009) 86235612-86238883 retained_intron
ENSMUST00000130614 (Ints2-004) 86256353-86257340 retained_intron
ENSMUST00000132024 (Ints2-005) 86255360-86257554 protein_coding
ENSMUST00000134828 (Ints2-011) 86217809-86229233 nonsense_mediated_decay
ENSMUST00000134883 (Ints2-008) 86234672-86257541 retained_intron
ENSMUST00000136469 (Ints2-003) 86256026-86257518 protein_coding
ENSMUST00000139285 (Ints2-007) 86251051-86257575 protein_coding
ENSMUST00000141756 (Ints2-006) 86256443-86257565 processed_transcript
ENSMUST00000146421 (Ints2-010) 86224943-86232176 retained_intron
ENSMUSG00000034297 (Med13)
mediator complex subunit 13 		ENSMUST00000043624 (Med13-001) 86267033-86357602 protein_coding
ENSMUST00000136622 (Med13-002) 86272547-86278600 processed_transcript
ENSMUST00000140514 (Med13-003) 86275374-86278992 retained_intron
ENSMUST00000144983 (Med13-004) 86331006-86332183 retained_intron
ENSMUSG00000085208 (Brip1os)
BRCA1 interacting protein C-terminal helicase 1, opposite strand 		ENSMUST00000128960 (Brip1os-001) 86201370-86211192 antisense
ENSMUST00000143819 (Brip1os-002) 86201383-86304443 antisense
ENSMUSG00000088230 (Gm25427)
predicted gene, 25427 		ENSMUST00000157605 (Gm25427-201) 86333206-86333308 misc_RNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00056C_0001ENSDARG00000053884ENSDART00000088852ENSDART00000134491CIL_00056C_0002ENSG00000108506ENST00000251334ENST00000444766ENST00000578805ENST00000583076ENST00000583822ENST00000584967ENST00000617492ENSG00000108510ENST00000397786ENST00000578132ENST00000580896ENST00000581994ENST00000582786ENST00000583958ENSG00000200842ENST00000363972ENSG00000202361ENST00000365491ENSG00000221302ENST00000408375ENSG00000242398ENST00000484823ENSG00000279133ENST00000624147CIL_00056C_0003ENSMUSG00000018068ENSMUST00000018212ENSMUST00000108039ENSMUST00000127745ENSMUST00000130614ENSMUST00000132024ENSMUST00000134828ENSMUST00000134883ENSMUST00000136469ENSMUST00000139285ENSMUST00000141756ENSMUST00000146421ENSMUSG00000034297ENSMUST00000043624ENSMUST00000136622ENSMUST00000140514ENSMUST00000144983ENSMUSG00000085208ENSMUST00000128960ENSMUST00000143819ENSMUSG00000088230ENSMUST00000157605
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00056C_0001ENSDARG00000053884ENSDART00000088852ENSDART00000134491CIL_00056C_0002ENSG00000108506ENST00000251334ENST00000444766ENST00000617492ENSG00000108510ENST00000397786ENSG00000200842ENST00000363972ENSG00000202361ENST00000365491ENSG00000221302ENST00000408375ENSG00000242398ENST00000484823ENSG00000279133ENST00000624147CIL_00056C_0003ENSMUSG00000018068ENSMUST00000018212ENSMUST00000108039ENSMUSG00000034297ENSMUST00000043624ENSMUSG00000085208ENSMUST00000128960ENSMUSG00000088230ENSMUST00000157605
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000053884 ENSDART00000088852 N/A N/A N/A 6.367±1.38 N/A N/A 8.545±4.74 13.070±7.67 0.470±0.00 N/A 5.557±0.00 N/A N/A N/A
ENSDART00000134491 N/A N/A N/A 1.356±0.90 N/A N/A 1.366±0.00 1.291±0.00 0.387±0.00 N/A 1.471±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000108506 ENST00000251334 N/A N/A N/A N/A 0.634±0.00 0.401±0.00 N/A N/A N/A 0.996±0.00 0.411±0.00 N/A N/A 0.971±0.00
ENST00000444766 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.735±0.00 N/A N/A N/A 0.488±0.00
ENST00000578805 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583076 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583822 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584967 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617492 1.173±0.00 1.440±0.00 0.850±0.00 1.170±0.14 1.026±0.00 0.587±0.34 0.699±0.00 0.945±0.24 0.380±0.01 0.223±0.00 0.480±0.00 1.046±0.02 0.678±0.55 1.866±0.44
ENSG00000108510 ENST00000397786 5.902±0.00 4.620±0.00 4.668±0.00 4.461±0.85 3.331±1.68 5.579±2.06 3.194±0.85 6.853±0.81 5.048±2.36 5.325±0.96 3.231±1.57 5.984±2.32 1.500±0.39 8.345±1.70
ENST00000578132 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582786 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583958 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000200842 ENST00000363972 N/A 0.793±0.00 N/A N/A 0.613±0.00 N/A 0.142±0.00 N/A 0.137±0.00 N/A N/A N/A N/A 0.648±0.00
ENSG00000202361 ENST00000365491 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.175±0.00
ENSG00000221302 ENST00000408375 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.749±0.00 N/A N/A N/A N/A
ENSG00000242398 ENST00000484823 N/A N/A N/A N/A N/A N/A 1.432±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000279133 ENST00000624147 0.303±0.00 1.241±0.00 4.761±0.00 0.609±0.14 1.376±0.94 1.741±1.65 0.296±0.10 0.753±0.47 1.230±0.93 1.389±1.18 0.702±0.52 1.174±0.97 0.352±0.31 0.750±0.33
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000018068 ENSMUST00000018212 3.331±0.00 2.598±0.25 5.435±0.33 6.833±4.01 N/A 2.325±0.36 N/A 4.018±0.49 5.064±2.67 N/A N/A 4.383±0.34 5.344±1.57 2.630±0.29
ENSMUST00000108039 3.546±1.10 3.084±0.00 N/A 3.226±0.00 N/A 2.275±0.00 N/A N/A N/A N/A N/A 4.849±0.42 6.393±0.00 3.360±0.76
ENSMUST00000127745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130614 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136469 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139285 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141756 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000034297 ENSMUST00000043624 5.991±3.26 4.549±1.11 4.229±1.07 5.939±1.96 8.004±2.72 4.802±1.02 3.375±0.42 6.174±1.48 3.310±1.45 8.672±1.61 3.523±0.73 6.075±2.85 8.023±2.30 4.305±1.68
ENSMUST00000136622 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085208 ENSMUST00000128960 5.166±1.18 4.474±0.59 7.665±0.52 6.831±0.49 7.084±1.34 7.637±0.66 2.347±0.11 6.092±0.22 5.638±2.53 6.558±0.73 N/A 7.428±1.45 6.732±2.22 N/A
ENSMUST00000143819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000088230 ENSMUST00000157605 N/A N/A N/A 44.833±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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