C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00056H_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000165935-ENSG00000110841 CGP 9606 12:27466810-27695564
GeneTranscriptPositionBiotype
ENSG00000110841 (PPFIBP1)
PTPRF interacting protein, binding protein 1 (liprin beta 1) 		ENST00000228425 (PPFIBP1-001) 27524256-27695564 protein_coding
ENST00000318304 (PPFIBP1-007) 27524206-27695564 protein_coding
ENST00000534917 (PPFIBP1-011) 27654386-27657123 retained_intron
ENST00000535047 (PPFIBP1-006) 27524220-27647977 protein_coding
ENST00000535575 (PPFIBP1-010) 27538123-27635104 protein_coding
ENST00000537261 (PPFIBP1-016) 27660934-27676557 protein_coding
ENST00000537927 (PPFIBP1-003) 27524182-27695563 protein_coding
ENST00000538433 (PPFIBP1-009) 27523431-27650052 protein_coding
ENST00000539326 (PPFIBP1-012) 27682624-27693127 protein_coding
ENST00000540114 (PPFIBP1-002) 27524173-27691784 protein_coding
ENST00000540256 (PPFIBP1-013) 27688189-27689203 retained_intron
ENST00000540503 (PPFIBP1-017) 27679800-27682655 retained_intron
ENST00000541633 (PPFIBP1-014) 27524174-27584418 processed_transcript
ENST00000542187 (PPFIBP1-015) 27599348-27647789 protein_coding
ENST00000542629 (PPFIBP1-008) 27524224-27692882 protein_coding
ENST00000545334 (PPFIBP1-005) 27524158-27637319 protein_coding
ENST00000545381 (PPFIBP1-004) 27524142-27658848 non_stop_decay
ENST00000619325 (PPFIBP1-018) 27676428-27677992 protein_coding
ENSG00000165935 (SMCO2)
single-pass membrane protein with coiled-coil domains 2 		ENST00000298876 (SMCO2-002) 27466810-27502185 protein_coding
ENST00000416383 (SMCO2-201) 27466810-27502185 protein_coding
ENST00000535986 (SMCO2-001) 27470632-27502185 protein_coding
ENST00000538647 (SMCO2-005) 27474896-27495798 processed_transcript
ENST00000541168 (SMCO2-004) 27493836-27502147 retained_intron
ENST00000543991 (SMCO2-003) 27470622-27473117 retained_intron
ENSG00000248100 (RP11-709A23.1)
 ENST00000506925 (RP11-709A23.1-001) 27547050-27552773 lincRNA
ENSG00000256056 (RP11-709A23.2)
 ENST00000538759 (RP11-709A23.2-001) 27592461-27594039 unprocessed_pseudogene
ENSG00000256557 (RP11-1060J15.3)
 ENST00000542428 (RP11-1060J15.3-001) 27608733-27609046 processed_pseudogene
ENSG00000257037 (RARSP1)
arginyl-tRNA synthetase pseudogene 1 		ENST00000542842 (RARSP1-001) 27496937-27498589 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00056H_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030292-ENSMUSG00000016487 CGP 10090 6:146850104-147032025
GeneTranscriptPositionBiotype
ENSMUSG00000016487 (Ppfibp1)
PTPRF interacting protein, binding protein 1 (liprin beta 1) 		ENSMUST00000016631 (Ppfibp1-001) 146888487-147032025 protein_coding
ENSMUST00000111623 (Ppfibp1-002) 146888589-147032025 protein_coding
ENSMUST00000123902 (Ppfibp1-004) 146999545-147032023 retained_intron
ENSMUST00000126774 (Ppfibp1-007) 146996442-147002249 processed_transcript
ENSMUST00000133825 (Ppfibp1-008) 147001694-147005995 retained_intron
ENSMUST00000136837 (Ppfibp1-010) 147010879-147019580 protein_coding
ENSMUST00000149203 (Ppfibp1-005) 147000315-147017445 retained_intron
ENSMUST00000154221 (Ppfibp1-006) 146992480-147005967 protein_coding
ENSMUST00000155415 (Ppfibp1-009) 147002243-147019173 protein_coding
ENSMUSG00000030292 (Smco2)
single-pass membrane protein with coiled-coil domains 2 		ENSMUST00000032433 (Smco2-201) 146850104-146871404 protein_coding
ENSMUST00000111634 (Smco2-001) 146850104-146871406 protein_coding
ENSMUST00000128575 (Smco2-003) 146850157-146856182 processed_transcript
ENSMUST00000148099 (Smco2-002) 146861800-146868166 protein_coding
ENSMUSG00000040163 (1700034J05Rik)
RIKEN cDNA 1700034J05 gene 		ENSMUST00000036592 (1700034J05Rik-001) 146950329-146954422 protein_coding
ENSMUST00000111622 (1700034J05Rik-002) 146951302-146954414 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00056H_0001ENSG00000110841ENST00000228425ENST00000318304ENST00000534917ENST00000535047ENST00000535575ENST00000537261ENST00000537927ENST00000538433ENST00000539326ENST00000540114ENST00000540256ENST00000540503ENST00000541633ENST00000542187ENST00000542629ENST00000545334ENST00000545381ENST00000619325ENSG00000165935ENST00000298876ENST00000416383ENST00000535986ENST00000538647ENST00000541168ENST00000543991ENSG00000248100ENST00000506925ENSG00000256056ENST00000538759ENSG00000256557ENST00000542428ENSG00000257037ENST00000542842CIL_00056H_0002ENSMUSG00000016487ENSMUST00000016631ENSMUST00000111623ENSMUST00000123902ENSMUST00000126774ENSMUST00000133825ENSMUST00000136837ENSMUST00000149203ENSMUST00000154221ENSMUST00000155415ENSMUSG00000030292ENSMUST00000032433ENSMUST00000111634ENSMUST00000128575ENSMUST00000148099ENSMUSG00000040163ENSMUST00000036592ENSMUST00000111622
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00056H_0001ENSG00000110841ENST00000228425ENST00000318304ENST00000535047ENST00000537261ENST00000537927ENST00000539326ENST00000541633ENST00000542629ENST00000545381ENSG00000165935ENST00000298876ENST00000535986ENST00000538647ENST00000541168ENST00000543991ENSG00000248100ENST00000506925ENSG00000256056ENST00000538759ENSG00000256557ENST00000542428ENSG00000257037ENST00000542842CIL_00056H_0002ENSMUSG00000016487ENSMUST00000016631ENSMUST00000111623ENSMUST00000123902ENSMUST00000149203ENSMUST00000154221ENSMUSG00000030292ENSMUST00000032433ENSMUST00000111634ENSMUST00000128575ENSMUST00000148099ENSMUSG00000040163ENSMUST00000036592ENSMUST00000111622
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000110841 ENST00000228425 4.393±0.00 2.199±0.00 1.593±0.00 1.422±0.00 4.746±0.00 1.754±0.60 6.495±3.65 2.346±1.33 2.405±0.56 5.080±1.88 0.774±0.02 4.527±1.91 3.701±0.33 1.414±0.32
ENST00000318304 N/A N/A N/A 2.151±0.59 1.054±0.00 N/A 15.163±0.00 1.503±0.72 N/A 2.048±0.00 N/A 1.905±0.00 N/A 0.571±0.00
ENST00000534917 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535047 N/A N/A 12.153±0.00 7.052±0.00 9.798±0.00 8.021±0.00 29.027±0.00 N/A 12.069±0.00 13.906±0.00 N/A 17.446±0.00 N/A N/A
ENST00000535575 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.936±0.00 N/A N/A N/A
ENST00000537927 N/A N/A N/A 1.413±0.34 1.190±0.00 N/A 4.249±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000538433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539326 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.489±0.00 15.565±0.00 4.931±0.00
ENST00000540114 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540256 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541633 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.609±0.00 N/A N/A N/A
ENST00000542187 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542629 3.246±0.00 N/A N/A 1.496±0.00 4.051±0.00 2.672±0.32 N/A 2.707±0.00 4.031±0.00 4.930±0.00 N/A 4.756±0.54 5.191±0.00 1.383±0.00
ENST00000545334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545381 N/A N/A 6.655±0.00 N/A 6.036±0.00 N/A 12.768±0.00 4.674±0.00 10.626±0.00 N/A N/A 12.856±0.00 N/A N/A
ENST00000619325 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000165935 ENST00000298876 N/A 0.143±0.00 N/A 0.066±0.00 N/A 0.015±0.00 0.143±0.00 N/A N/A 0.118±0.00 N/A 0.011±0.00 0.056±0.00 0.282±0.00
ENST00000416383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535986 N/A N/A N/A N/A N/A 0.193±0.00 N/A N/A 0.015±0.00 N/A N/A N/A 0.049±0.00 0.654±0.00
ENST00000538647 0.119±0.00 N/A N/A N/A 0.079±0.00 0.174±0.00 N/A N/A 0.165±0.00 N/A N/A 0.840±0.73 0.244±0.00 0.975±0.00
ENST00000541168 N/A 0.017±0.00 N/A 0.090±0.00 N/A N/A 0.022±0.00 N/A N/A N/A N/A 0.243±0.19 0.025±0.00 N/A
ENST00000543991 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.061±0.02 N/A
ENSG00000248100 ENST00000506925 N/A 0.089±0.00 N/A 0.116±0.02 0.005±0.00 0.009±0.00 0.237±0.00 0.083±0.04 0.095±0.08 N/A 0.261±0.00 0.088±0.00 0.137±0.00 0.060±0.04
ENSG00000256056 ENST00000538759 N/A 0.168±0.00 N/A 0.060±0.04 0.860±0.84 0.684±0.00 0.175±0.00 0.090±0.01 N/A 0.223±0.16 1.210±0.00 0.128±0.05 0.091±0.00 0.182±0.08
ENSG00000256557 ENST00000542428 N/A N/A 1.023±0.00 0.087±0.00 N/A 0.456±0.00 0.985±0.00 N/A N/A N/A N/A 0.102±0.00 N/A N/A
ENSG00000257037 ENST00000542842 N/A N/A N/A 0.075±0.00 N/A N/A N/A N/A N/A N/A N/A 0.053±0.00 0.043±0.00 0.041±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000016487 ENSMUST00000016631 12.429±2.13 5.388±0.66 11.954±4.82 2.875±0.25 5.036±0.83 4.628±1.22 4.841±1.17 8.264±2.78 3.825±1.17 15.941±4.82 1.570±0.71 12.105±4.03 21.637±8.03 4.372±1.82
ENSMUST00000111623 4.593±0.00 N/A 5.986±0.70 2.898±3.18 6.222±1.53 N/A 3.477±1.72 3.373±1.14 N/A N/A 1.041±0.39 8.226±0.65 5.890±0.08 2.363±0.54
ENSMUST00000123902 2.681±0.17 1.113±0.29 N/A 0.655±0.11 1.947±0.56 0.769±0.00 N/A N/A N/A N/A N/A 1.486±0.00 N/A 0.582±0.00
ENSMUST00000126774 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133825 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136837 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149203 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.060±0.20 N/A N/A
ENSMUST00000154221 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 35.446±0.00 46.882±0.00 31.399±0.00
ENSMUST00000155415 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000030292 ENSMUST00000032433 0.021±0.01 0.066±0.00 0.006±0.00 N/A 0.019±0.00 N/A 0.079±0.03 0.033±0.01 0.017±0.01 0.049±0.03 N/A 0.093±0.07 0.012±0.00 78.214±16.57
ENSMUST00000111634 0.020±0.01 0.065±0.00 0.006±0.00 N/A 0.019±0.00 N/A 0.076±0.03 0.032±0.01 0.018±0.01 0.049±0.03 N/A 0.092±0.07 0.012±0.00 76.787±0.00
ENSMUST00000128575 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.291±0.00 N/A N/A
ENSMUST00000148099 0.135±0.06 N/A N/A 0.114±0.00 N/A N/A 0.279±0.00 N/A N/A N/A N/A 0.217±0.13 0.042±0.00 N/A
ENSMUSG00000040163 ENSMUST00000036592 0.097±0.00 N/A N/A 0.010±0.00 N/A N/A 0.034±0.00 0.036±0.00 0.011±0.00 0.058±0.01 N/A 0.122±0.12 0.019±0.01 N/A
ENSMUST00000111622 0.063±0.05 0.048±0.00 N/A 0.017±0.00 0.056±0.04 0.056±0.02 0.048±0.01 0.063±0.05 0.027±0.03 0.029±0.00 0.011±0.00 0.088±0.01 0.019±0.00 51.284±24.43

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