C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00056W_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000113790-ENSG00000073803 CGP 9606 3:185190624-185489097
GeneTranscriptPositionBiotype
ENSG00000073803 (MAP3K13)
mitogen-activated protein kinase kinase kinase 13 		ENST00000265026 (MAP3K13-001) 185363120-185489097 protein_coding
ENST00000420577 (MAP3K13-013) 185437545-185465863 protein_coding
ENST00000424227 (MAP3K13-003) 185282977-185482456 protein_coding
ENST00000428617 (MAP3K13-012) 185328888-185428994 protein_coding
ENST00000433092 (MAP3K13-008) 185328895-185451534 nonsense_mediated_decay
ENST00000438053 (MAP3K13-002) 185363242-185482601 nonsense_mediated_decay
ENST00000438798 (MAP3K13-014) 185285393-185291749 protein_coding
ENST00000439882 (MAP3K13-007) 185428497-185447947 nonsense_mediated_decay
ENST00000443863 (MAP3K13-006) 185328895-185482811 protein_coding
ENST00000446828 (MAP3K13-004) 185282953-185482749 protein_coding
ENST00000447637 (MAP3K13-010) 185282961-185428920 protein_coding
ENST00000448876 (MAP3K13-005) 185282941-185293079 protein_coding
ENST00000454237 (MAP3K13-011) 185283026-185291917 protein_coding
ENST00000455188 (MAP3K13-009) 185282961-185329263 nonsense_mediated_decay
ENST00000477582 (MAP3K13-015) 185437447-185443707 retained_intron
ENSG00000113790 (EHHADH)
enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase 		ENST00000231887 (EHHADH-001) 185190624-185254098 protein_coding
ENST00000440662 (EHHADH-005) 185247945-185254031 protein_coding
ENST00000456310 (EHHADH-002) 185191970-185254048 protein_coding
ENST00000465178 (EHHADH-003) 185248433-185281990 processed_transcript
ENST00000475987 (EHHADH-004) 185218194-185254049 processed_transcript
ENST00000483104 (EHHADH-006) 185204656-185235462 processed_transcript
ENSG00000163900 (TMEM41A)
transmembrane protein 41A 		ENST00000296254 (TMEM41A-005) 185490997-185498987 protein_coding
ENST00000382227 (TMEM41A-006) 185476496-185499035 nonsense_mediated_decay
ENST00000421852 (TMEM41A-001) 185489601-185499057 protein_coding
ENST00000467061 (TMEM41A-004) 185492276-185499057 retained_intron
ENST00000467520 (TMEM41A-008) 185495228-185498722 processed_transcript
ENST00000475480 (TMEM41A-007) 185480160-185498985 processed_transcript
ENST00000484062 (TMEM41A-009) 185482671-185490027 processed_transcript
ENSG00000229638 (RPL4P4)
ribosomal protein L4 pseudogene 4 		ENST00000422486 (RPL4P4-001) 185417495-185418778 processed_pseudogene
ENSG00000229704 (EIF2S2P2)
eukaryotic translation initiation factor 2, subunit 2 beta pseudogene 2 		ENST00000447161 (EIF2S2P2-001) 185245460-185246441 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00056W_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022853-ENSMUSG00000033618 CGP 10090 16:21761287-21931877
GeneTranscriptPositionBiotype
ENSMUSG00000022853 (Ehhadh)
enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase 		ENSMUST00000023559 (Ehhadh-001) 21761287-21787844 protein_coding
ENSMUSG00000033618 (Map3k13)
mitogen-activated protein kinase kinase kinase 13 		ENSMUST00000042065 (Map3k13-201) 21891969-21931877 protein_coding
ENSMUSG00000091580 (Gm6467)
predicted gene 6467 		ENSMUST00000171547 (Gm6467-201) 21896506-21897116 pseudogene
ENSMUSG00000097290 (1300002E11Rik)
RIKEN cDNA 1300002E11 gene 		ENSMUST00000180830 (1300002E11Rik-201) 21794392-21806123 lincRNA
ENSMUST00000181780 (1300002E11Rik-202) 21794347-21806123 lincRNA
ENSMUST00000181960 (1300002E11Rik-203) 21794362-21809037 lincRNA
ENSMUSG00000097401 (Gm26744)
predicted gene, 26744 		ENSMUST00000181834 (Gm26744-201) 21843451-21845776 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00056W_0001ENSG00000073803ENST00000265026ENST00000424227ENST00000443863ENST00000446828ENST00000448876ENST00000477582ENSG00000113790ENST00000231887ENST00000456310ENSG00000163900ENST00000296254ENST00000421852ENST00000467061ENST00000484062ENSG00000229638ENST00000422486ENSG00000229704ENST00000447161CIL_00056W_0002ENSMUSG00000022853ENSMUST00000023559ENSMUSG00000033618ENSMUST00000042065ENSMUSG00000091580ENSMUST00000171547ENSMUSG00000097290ENSMUST00000180830ENSMUST00000181780ENSMUST00000181960ENSMUSG00000097401ENSMUST00000181834
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000073803 ENST00000265026 N/A 0.744±0.00 1.325±0.00 1.746±0.57 0.650±0.00 0.410±0.00 0.200±0.00 N/A N/A 0.684±0.04 N/A 3.037±2.17 0.305±0.00 0.795±0.22
ENST00000420577 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424227 N/A N/A 1.293±0.00 N/A 1.873±0.00 2.947±0.00 N/A N/A N/A N/A N/A 9.291±0.00 N/A N/A
ENST00000428617 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000438053 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000438798 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443863 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.893±0.00 N/A N/A N/A N/A
ENST00000446828 N/A N/A N/A N/A N/A N/A N/A 4.351±0.00 N/A N/A N/A N/A N/A N/A
ENST00000447637 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448876 7.612±0.00 7.365±0.00 N/A 9.472±2.50 5.974±0.00 8.571±0.00 1.730±0.97 5.868±0.00 3.861±1.08 11.589±0.00 1.098±0.00 10.639±0.30 4.198±0.27 7.154±1.72
ENST00000454237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477582 N/A N/A 15.998±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000113790 ENST00000231887 2.582±0.00 1.170±0.00 8.521±0.00 1.231±0.74 7.239±0.00 1.712±0.26 2.876±0.00 22.026±5.83 36.920±0.00 0.592±0.19 0.160±0.07 1.724±0.87 1.050±0.09 1.419±0.00
ENST00000440662 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456310 N/A N/A 18.403±0.00 0.716±0.00 0.898±0.00 2.566±0.00 1.449±0.00 42.935±0.00 1.267±0.00 0.347±0.19 0.216±0.00 4.050±0.98 1.917±0.00 1.330±0.00
ENST00000465178 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475987 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483104 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000163900 ENST00000296254 N/A N/A N/A N/A N/A N/A N/A N/A 6.474±0.00 N/A N/A N/A N/A N/A
ENST00000382227 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000421852 5.150±0.00 4.884±0.00 1.980±0.00 4.062±0.00 3.551±0.76 3.876±0.00 2.656±0.00 7.117±0.00 5.966±0.00 4.479±0.00 2.169±0.99 18.376±10.95 4.568±0.81 5.735±0.32
ENST00000467061 N/A N/A N/A N/A 1.101±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467520 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475480 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484062 N/A N/A N/A N/A N/A 10.625±0.00 N/A N/A N/A N/A N/A 50.252±0.00 4.599±0.00 N/A
ENSG00000229638 ENST00000422486 0.201±0.00 0.298±0.00 0.289±0.00 0.115±0.05 0.068±0.03 0.345±0.06 0.111±0.01 0.045±0.01 0.270±0.12 0.116±0.02 0.393±0.00 0.321±0.27 0.076±0.03 0.100±0.06
ENSG00000229704 ENST00000447161 N/A N/A 0.376±0.00 N/A 0.049±0.00 0.155±0.00 0.111±0.00 0.202±0.04 N/A 0.015±0.01 0.009±0.00 0.441±0.30 0.063±0.00 0.128±0.06
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022853 ENSMUST00000023559 12.643±3.70 5.847±3.22 4.253±0.28 0.440±0.14 9.384±2.37 9.263±0.48 2.548±0.60 113.192±29.32 89.899±61.56 2.227±0.46 1.417±0.31 1.924±0.41 6.852±4.00 0.456±0.17
ENSMUSG00000033618 ENSMUST00000042065 0.122±0.03 0.416±0.10 0.323±0.00 3.499±0.00 0.320±0.06 N/A 0.186±0.00 N/A 0.887±0.29 N/A 0.195±0.06 0.442±0.12 0.261±0.08 0.203±0.09
ENSMUSG00000091580 ENSMUST00000171547 7.826±0.78 0.826±0.35 0.920±0.18 0.601±0.37 4.781±0.82 2.249±0.98 2.557±0.90 3.008±2.01 1.113±0.67 3.367±0.19 0.237±0.13 5.959±2.77 0.181±0.08 1.143±0.37
ENSMUSG00000097290 ENSMUST00000180830 0.819±0.11 0.711±0.00 3.858±0.36 2.396±0.96 1.661±0.74 0.683±0.17 0.542±0.12 1.317±0.63 1.778±0.67 2.545±0.80 0.480±0.20 1.395±0.73 0.624±0.31 0.167±0.01
ENSMUST00000181780 N/A 0.467±0.06 N/A 0.382±0.00 N/A N/A N/A 0.869±0.00 1.047±0.00 N/A N/A 0.480±0.04 0.266±0.03 0.149±0.00
ENSMUST00000181960 2.490±0.00 N/A N/A 5.542±0.99 N/A N/A 2.957±0.48 5.608±0.82 8.995±4.29 N/A 1.596±0.35 10.061±3.76 6.325±5.33 2.374±0.46
ENSMUSG00000097401 ENSMUST00000181834 0.027±0.00 0.181±0.00 0.073±0.01 0.115±0.10 0.065±0.01 0.293±0.20 0.021±0.00 0.114±0.08 0.080±0.05 0.046±0.01 0.012±0.00 0.035±0.00 0.018±0.00 0.038±0.01

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