Institute of Cardiovascular Regeneration Webtool Repository

Source ID	Type	Tax ID	Position
ENSDARG00000015399-ENSDARG00000062042	CGP	7955	18:30791440-30893894
Gene	Transcript	Position	Biotype
ENSDARG00000015399 (foxf1) forkhead box F1	ENSDART00000012374 (foxf1-001)	30791440-30794568	protein_coding
ENSDARG00000062042 (mthfsd) methenyltetrahydrofolate synthetase domain containing	ENSDART00000099326 (mthfsd-201)	30822490-30893894	protein_coding
ENSDART00000139398 (mthfsd-002)	30859634-30877961	protein_coding
ENSDART00000146041 (mthfsd-001)	30822506-30877992	protein_coding
ENSDARG00000094938 (si:dkey-199i24.3) si:dkey-199i24.3	ENSDART00000143297 (si:dkey-199i24.3-001)	30798711-30799750	processed_transcript

Source ID	Type	Tax ID	Position
ENSG00000103241-ENSG00000103248	CGP	9606	16:86510527-86555235
Gene	Transcript	Position	Biotype
ENSG00000103241 (FOXF1) forkhead box F1	ENST00000262426 (FOXF1-001)	86510527-86515418	protein_coding
ENSG00000103248 (MTHFSD) methenyltetrahydrofolate synthetase domain containing	ENST00000360900 (MTHFSD-001)	86530176-86555210	protein_coding
ENST00000381214 (MTHFSD-003)	86531972-86555203	protein_coding
ENST00000543303 (MTHFSD-002)	86531972-86555203	protein_coding
ENST00000546093 (MTHFSD-004)	86530833-86555235	protein_coding
ENST00000561522 (MTHFSD-010)	86542117-86555235	protein_coding
ENST00000561848 (MTHFSD-016)	86552038-86553721	processed_transcript
ENST00000561989 (MTHFSD-012)	86548067-86555169	protein_coding
ENST00000562096 (MTHFSD-019)	86532362-86542545	retained_intron
ENST00000562940 (MTHFSD-005)	86540720-86554749	protein_coding
ENST00000562994 (MTHFSD-009)	86542112-86555235	protein_coding
ENST00000564364 (MTHFSD-014)	86546605-86555154	protein_coding
ENST00000565482 (MTHFSD-015)	86548488-86555021	protein_coding
ENST00000566050 (MTHFSD-007)	86531972-86555203	nonsense_mediated_decay
ENST00000566469 (MTHFSD-018)	86541535-86554748	protein_coding
ENST00000567539 (MTHFSD-013)	86532336-86555235	nonsense_mediated_decay
ENST00000568037 (MTHFSD-017)	86547146-86555178	protein_coding
ENST00000568798 (MTHFSD-008)	86542110-86555235	nonsense_mediated_decay
ENST00000569000 (MTHFSD-011)	86541739-86555235	protein_coding
ENST00000625049 (MTHFSD-006)	86530178-86533800	TEC
ENSG00000243697 (RP11-463O9.1)	ENST00000473913 (RP11-463O9.1-001)	86525457-86526252	processed_pseudogene
ENSG00000270020 (RP11-463O9.9)	ENST00000602739 (RP11-463O9.9-001)	86520383-86523897	lincRNA

Notice (8): Undefined index: CIL_000576_0003 [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_000576_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_000576_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSDARG00000015399' => 'forkhead box F1',
		'ENSDARG00000062042' => 'methenyltetrahydrofolate synthetase domain containing',
		'ENSDARG00000094938' => 'si:dkey-199i24.3',
		'ENSG00000103241' => 'forkhead box F1',
		'ENSG00000103248' => 'methenyltetrahydrofolate synthetase domain containing',
		'ENSG00000243697' => null,
		'ENSG00000270020' => null,
		'ENSG00000277360' => null,
		'ENSMUSG00000031816' => 'methenyltetrahydrofolate synthetase domain containing',
		'ENSMUSG00000042812' => 'forkhead box F1',
		'ENSMUSG00000096952' => 'predicted gene, 26572',
		'ENSMUSG00000098560' => 'predicted gene, 27530'
	),
	'gene_name_arr' => array(
		'ENSDARG00000015399' => 'foxf1',
		'ENSDARG00000062042' => 'mthfsd',
		'ENSDARG00000094938' => 'si:dkey-199i24.3',
		'ENSG00000103241' => 'FOXF1',
		'ENSG00000103248' => 'MTHFSD',
		'ENSG00000243697' => 'RP11-463O9.1',
		'ENSG00000270020' => 'RP11-463O9.9',
		'ENSG00000277360' => 'AC009108.2',
		'ENSMUSG00000031816' => 'Mthfsd',
		'ENSMUSG00000042812' => 'Foxf1',
		'ENSMUSG00000096952' => 'Gm26572',
		'ENSMUSG00000098560' => 'Gm27530'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 4 => 'Adrenal',
		(int) 8 => 'Bladder',
		(int) 11 => 'Brain',
		(int) 20 => 'Breast',
		(int) 28 => 'Colon',
		(int) 35 => 'Heart',
		(int) 45 => 'Kidney',
		(int) 54 => 'Liver',
		(int) 62 => 'Lung',
		(int) 65 => 'Muscle',
		(int) 74 => 'Ovary',
		(int) 81 => 'Placenta',
		(int) 83 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 46,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENSDART00000012374' => array(
			'start' => '30791440',
			'end' => '30794568',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'foxf1-001'
		),
		'ENSDART00000099326' => array(
			'start' => '30822490',
			'end' => '30893894',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'mthfsd-201'
		),
		'ENSDART00000139398' => array(
			'start' => '30859634',
			'end' => '30877961',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'mthfsd-002'
		),
		'ENSDART00000146041' => array(
			'start' => '30822506',
			'end' => '30877992',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'mthfsd-001'
		),
		'ENSDART00000143297' => array(
			'start' => '30798711',
			'end' => '30799750',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'si:dkey-199i24.3-001'
		),
		'ENST00000262426' => array(
			'start' => '86510527',
			'end' => '86515418',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'FOXF1-001'
		),
		'ENST00000360900' => array(
			'start' => '86530176',
			'end' => '86555210',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MTHFSD-001'
		),
		'ENST00000381214' => array(
			'start' => '86531972',
			'end' => '86555203',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MTHFSD-003'
		),
		'ENST00000543303' => array(
			'start' => '86531972',
			'end' => '86555203',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MTHFSD-002'
		),
		'ENST00000546093' => array(
			'start' => '86530833',
			'end' => '86555235',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MTHFSD-004'
		),
		'ENST00000561522' => array(
			'start' => '86542117',
			'end' => '86555235',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MTHFSD-010'
		),
		'ENST00000561848' => array(
			'start' => '86552038',
			'end' => '86553721',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'MTHFSD-016'
		),
		'ENST00000561989' => array(
			'start' => '86548067',
			'end' => '86555169',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MTHFSD-012'
		),
		'ENST00000562096' => array(
			'start' => '86532362',
			'end' => '86542545',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'MTHFSD-019'
		),
		'ENST00000562940' => array(
			'start' => '86540720',
			'end' => '86554749',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MTHFSD-005'
		),
		'ENST00000562994' => array(
			'start' => '86542112',
			'end' => '86555235',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MTHFSD-009'
		),
		'ENST00000564364' => array(
			'start' => '86546605',
			'end' => '86555154',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MTHFSD-014'
		),
		'ENST00000565482' => array(
			'start' => '86548488',
			'end' => '86555021',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MTHFSD-015'
		),
		'ENST00000566050' => array(
			'start' => '86531972',
			'end' => '86555203',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'MTHFSD-007'
		),
		'ENST00000566469' => array(
			'start' => '86541535',
			'end' => '86554748',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MTHFSD-018'
		),
		'ENST00000567539' => array(
			'start' => '86532336',
			'end' => '86555235',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'MTHFSD-013'
		),
		'ENST00000568037' => array(
			'start' => '86547146',
			'end' => '86555178',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MTHFSD-017'
		),
		'ENST00000568798' => array(
			'start' => '86542110',
			'end' => '86555235',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'MTHFSD-008'
		),
		'ENST00000569000' => array(
			'start' => '86541739',
			'end' => '86555235',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MTHFSD-011'
		),
		'ENST00000625049' => array(
			'start' => '86530178',
			'end' => '86533800',
			'transcript_biotype' => 'TEC',
			'transcript_name' => 'MTHFSD-006'
		),
		'ENST00000473913' => array(
			'start' => '86525457',
			'end' => '86526252',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'RP11-463O9.1-001'
		),
		'ENST00000602739' => array(
			'start' => '86520383',
			'end' => '86523897',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-463O9.9-001'
		),
		'ENST00000616245' => array(
			'start' => '86510780',
			'end' => '86510877',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'AC009108.2-201'
		),
		'ENSMUST00000047282' => array(
			'start' => '121097940',
			'end' => '121108318',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Mthfsd-002'
		),
		'ENSMUST00000116415' => array(
			'start' => '121097557',
			'end' => '121108327',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Mthfsd-001'
		),
		'ENSMUST00000126431' => array(
			'start' => '121101176',
			'end' => '121108298',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Mthfsd-010'
		),
		'ENSMUST00000128052' => array(
			'start' => '121097555',
			'end' => '121108295',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Mthfsd-003'
		),
		'ENSMUST00000128503' => array(
			'start' => '121104475',
			'end' => '121108343',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Mthfsd-006'
		),
		'ENSMUST00000133037' => array(
			'start' => '121097851',
			'end' => '121108392',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Mthfsd-005'
		),
		'ENSMUST00000133058' => array(
			'start' => '121095012',
			'end' => '121101185',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Mthfsd-015'
		),
		'ENSMUST00000134758' => array(
			'start' => '121098708',
			'end' => '121108288',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Mthfsd-011'
		),
		'ENSMUST00000138908' => array(
			'start' => '121099008',
			'end' => '121105632',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Mthfsd-012'
		),
		'ENSMUST00000139782' => array(
			'start' => '121097557',
			'end' => '121108310',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Mthfsd-008'
		),
		'ENSMUST00000140260' => array(
			'start' => '121097767',
			'end' => '121101593',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Mthfsd-013'
		),
		'ENSMUST00000145991' => array(
			'start' => '121103852',
			'end' => '121105689',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Mthfsd-014'
		),
		'ENSMUST00000149718' => array(
			'start' => '121097937',
			'end' => '121108379',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Mthfsd-004'
		),
		'ENSMUST00000151576' => array(
			'start' => '121104099',
			'end' => '121108313',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Mthfsd-007'
		),
		'ENSMUST00000156606' => array(
			'start' => '121102723',
			'end' => '121107643',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Mthfsd-009'
		),
		'ENSMUST00000181504' => array(
			'start' => '121084386',
			'end' => '121088144',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Foxf1-001'
		),
		'ENSMUST00000181096' => array(
			'start' => '121091628',
			'end' => '121094858',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'Gm26572-001'
		),
		'ENSMUST00000184096' => array(
			'start' => '121084609',
			'end' => '121084706',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'Gm27530-201'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_000576_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_000576_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_000576_0001' => array(
		'genes_in_region' => array(
			'ENSDARG00000015399' => array(
				[maximum depth reached]
			),
			'ENSDARG00000062042' => array(
				[maximum depth reached]
			),
			'ENSDARG00000094938' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney',
			(int) 3 => 'Liver',
			(int) 4 => 'Muscle',
			(int) 5 => 'Brain',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Muscle',
			(int) 10 => 'Brain',
			(int) 11 => 'Heart',
			(int) 12 => 'Kidney'
		)
	),
	'CIL_000576_0002' => array(
		'genes_in_region' => array(
			'ENSG00000103241' => array(
				[maximum depth reached]
			),
			'ENSG00000103248' => array(
				[maximum depth reached]
			),
			'ENSG00000243697' => array(
				[maximum depth reached]
			),
			'ENSG00000270020' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Breast',
			(int) 5 => 'Colon',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Lung',
			(int) 10 => 'Muscle',
			(int) 11 => 'Ovary',
			(int) 12 => 'Placenta',
			(int) 13 => 'Testis',
			(int) 14 => 'Brain',
			(int) 15 => 'Breast',
			(int) 16 => 'Colon',
			(int) 17 => 'Heart',
			(int) 18 => 'Kidney',
			(int) 19 => 'Liver',
			(int) 20 => 'Muscle',
			(int) 21 => 'Ovary',
			(int) 22 => 'Testis',
			(int) 23 => 'Heart',
			(int) 24 => 'Adipose',
			(int) 25 => 'Breast',
			(int) 26 => 'Colon',
			(int) 27 => 'Heart',
			(int) 28 => 'Kidney',
			(int) 29 => 'Liver',
			(int) 30 => 'Lung',
			(int) 31 => 'Ovary',
			(int) 32 => 'Testis',
			(int) 33 => 'Brain',
			(int) 34 => 'Muscle',
			(int) 35 => 'Breast',
			(int) 36 => 'Kidney',
			(int) 37 => 'Muscle',
			(int) 38 => 'Bladder',
			(int) 39 => 'Brain',
			(int) 40 => 'Heart',
			(int) 41 => 'Muscle',
			(int) 42 => 'Ovary',
			(int) 43 => 'Colon',
			(int) 44 => 'Breast',
			(int) 45 => 'Liver',
			(int) 46 => 'Adrenal',
			(int) 47 => 'Bladder',
			(int) 48 => 'Breast',
			(int) 49 => 'Colon',
			(int) 50 => 'Ovary',
			(int) 51 => 'Adipose',
			(int) 52 => 'Adrenal',
			(int) 53 => 'Brain',
			(int) 54 => 'Breast',
			(int) 55 => 'Colon',
			(int) 56 => 'Heart',
			(int) 57 => 'Kidney',
			(int) 58 => 'Liver',
			(int) 59 => 'Muscle',
			(int) 60 => 'Ovary',
			(int) 61 => 'Testis',
			(int) 62 => 'Adipose',
			(int) 63 => 'Adrenal',
			(int) 64 => 'Brain',
			(int) 65 => 'Breast',
			(int) 66 => 'Colon',
			(int) 67 => 'Heart',
			(int) 68 => 'Kidney',
			(int) 69 => 'Liver',
			(int) 70 => 'Lung',
			(int) 71 => 'Muscle',
			(int) 72 => 'Ovary',
			(int) 73 => 'Placenta',
			(int) 74 => 'Testis'
		)
	)
)
$gene_desc_arr = array(
	'ENSDARG00000015399' => 'forkhead box F1',
	'ENSDARG00000062042' => 'methenyltetrahydrofolate synthetase domain containing',
	'ENSDARG00000094938' => 'si:dkey-199i24.3',
	'ENSG00000103241' => 'forkhead box F1',
	'ENSG00000103248' => 'methenyltetrahydrofolate synthetase domain containing',
	'ENSG00000243697' => null,
	'ENSG00000270020' => null,
	'ENSG00000277360' => null,
	'ENSMUSG00000031816' => 'methenyltetrahydrofolate synthetase domain containing',
	'ENSMUSG00000042812' => 'forkhead box F1',
	'ENSMUSG00000096952' => 'predicted gene, 26572',
	'ENSMUSG00000098560' => 'predicted gene, 27530'
)
$gene_name_arr = array(
	'ENSDARG00000015399' => 'foxf1',
	'ENSDARG00000062042' => 'mthfsd',
	'ENSDARG00000094938' => 'si:dkey-199i24.3',
	'ENSG00000103241' => 'FOXF1',
	'ENSG00000103248' => 'MTHFSD',
	'ENSG00000243697' => 'RP11-463O9.1',
	'ENSG00000270020' => 'RP11-463O9.9',
	'ENSG00000277360' => 'AC009108.2',
	'ENSMUSG00000031816' => 'Mthfsd',
	'ENSMUSG00000042812' => 'Foxf1',
	'ENSMUSG00000096952' => 'Gm26572',
	'ENSMUSG00000098560' => 'Gm27530'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_000576_0001',
			'tax_id' => '7955',
			'chromosome' => '18',
			'seq_start' => '30791440',
			'seq_end' => '30893894',
			'region_length' => '102454',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000015399-ENSDARG00000062042'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_000576_0002',
			'tax_id' => '9606',
			'chromosome' => '16',
			'seq_start' => '86510527',
			'seq_end' => '86555235',
			'region_length' => '44708',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000103241-ENSG00000103248'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_000576_0003',
			'tax_id' => '10090',
			'chromosome' => '8',
			'seq_start' => '121084386',
			'seq_end' => '121108392',
			'region_length' => '24006',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000042812-ENSMUSG00000031816'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 4 => 'Adrenal',
	(int) 8 => 'Bladder',
	(int) 11 => 'Brain',
	(int) 20 => 'Breast',
	(int) 28 => 'Colon',
	(int) 35 => 'Heart',
	(int) 45 => 'Kidney',
	(int) 54 => 'Liver',
	(int) 62 => 'Lung',
	(int) 65 => 'Muscle',
	(int) 74 => 'Ovary',
	(int) 81 => 'Placenta',
	(int) 83 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 46
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENSDART00000012374' => array(
		'start' => '30791440',
		'end' => '30794568',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'foxf1-001'
	),
	'ENSDART00000099326' => array(
		'start' => '30822490',
		'end' => '30893894',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'mthfsd-201'
	),
	'ENSDART00000139398' => array(
		'start' => '30859634',
		'end' => '30877961',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'mthfsd-002'
	),
	'ENSDART00000146041' => array(
		'start' => '30822506',
		'end' => '30877992',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'mthfsd-001'
	),
	'ENSDART00000143297' => array(
		'start' => '30798711',
		'end' => '30799750',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'si:dkey-199i24.3-001'
	),
	'ENST00000262426' => array(
		'start' => '86510527',
		'end' => '86515418',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'FOXF1-001'
	),
	'ENST00000360900' => array(
		'start' => '86530176',
		'end' => '86555210',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MTHFSD-001'
	),
	'ENST00000381214' => array(
		'start' => '86531972',
		'end' => '86555203',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MTHFSD-003'
	),
	'ENST00000543303' => array(
		'start' => '86531972',
		'end' => '86555203',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MTHFSD-002'
	),
	'ENST00000546093' => array(
		'start' => '86530833',
		'end' => '86555235',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MTHFSD-004'
	),
	'ENST00000561522' => array(
		'start' => '86542117',
		'end' => '86555235',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MTHFSD-010'
	),
	'ENST00000561848' => array(
		'start' => '86552038',
		'end' => '86553721',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'MTHFSD-016'
	),
	'ENST00000561989' => array(
		'start' => '86548067',
		'end' => '86555169',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MTHFSD-012'
	),
	'ENST00000562096' => array(
		'start' => '86532362',
		'end' => '86542545',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'MTHFSD-019'
	),
	'ENST00000562940' => array(
		'start' => '86540720',
		'end' => '86554749',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MTHFSD-005'
	),
	'ENST00000562994' => array(
		'start' => '86542112',
		'end' => '86555235',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MTHFSD-009'
	),
	'ENST00000564364' => array(
		'start' => '86546605',
		'end' => '86555154',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MTHFSD-014'
	),
	'ENST00000565482' => array(
		'start' => '86548488',
		'end' => '86555021',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MTHFSD-015'
	),
	'ENST00000566050' => array(
		'start' => '86531972',
		'end' => '86555203',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'MTHFSD-007'
	),
	'ENST00000566469' => array(
		'start' => '86541535',
		'end' => '86554748',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MTHFSD-018'
	),
	'ENST00000567539' => array(
		'start' => '86532336',
		'end' => '86555235',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'MTHFSD-013'
	),
	'ENST00000568037' => array(
		'start' => '86547146',
		'end' => '86555178',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MTHFSD-017'
	),
	'ENST00000568798' => array(
		'start' => '86542110',
		'end' => '86555235',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'MTHFSD-008'
	),
	'ENST00000569000' => array(
		'start' => '86541739',
		'end' => '86555235',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MTHFSD-011'
	),
	'ENST00000625049' => array(
		'start' => '86530178',
		'end' => '86533800',
		'transcript_biotype' => 'TEC',
		'transcript_name' => 'MTHFSD-006'
	),
	'ENST00000473913' => array(
		'start' => '86525457',
		'end' => '86526252',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'RP11-463O9.1-001'
	),
	'ENST00000602739' => array(
		'start' => '86520383',
		'end' => '86523897',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-463O9.9-001'
	),
	'ENST00000616245' => array(
		'start' => '86510780',
		'end' => '86510877',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'AC009108.2-201'
	),
	'ENSMUST00000047282' => array(
		'start' => '121097940',
		'end' => '121108318',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Mthfsd-002'
	),
	'ENSMUST00000116415' => array(
		'start' => '121097557',
		'end' => '121108327',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Mthfsd-001'
	),
	'ENSMUST00000126431' => array(
		'start' => '121101176',
		'end' => '121108298',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Mthfsd-010'
	),
	'ENSMUST00000128052' => array(
		'start' => '121097555',
		'end' => '121108295',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Mthfsd-003'
	),
	'ENSMUST00000128503' => array(
		'start' => '121104475',
		'end' => '121108343',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Mthfsd-006'
	),
	'ENSMUST00000133037' => array(
		'start' => '121097851',
		'end' => '121108392',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Mthfsd-005'
	),
	'ENSMUST00000133058' => array(
		'start' => '121095012',
		'end' => '121101185',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Mthfsd-015'
	),
	'ENSMUST00000134758' => array(
		'start' => '121098708',
		'end' => '121108288',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Mthfsd-011'
	),
	'ENSMUST00000138908' => array(
		'start' => '121099008',
		'end' => '121105632',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Mthfsd-012'
	),
	'ENSMUST00000139782' => array(
		'start' => '121097557',
		'end' => '121108310',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Mthfsd-008'
	),
	'ENSMUST00000140260' => array(
		'start' => '121097767',
		'end' => '121101593',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Mthfsd-013'
	),
	'ENSMUST00000145991' => array(
		'start' => '121103852',
		'end' => '121105689',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Mthfsd-014'
	),
	'ENSMUST00000149718' => array(
		'start' => '121097937',
		'end' => '121108379',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Mthfsd-004'
	),
	'ENSMUST00000151576' => array(
		'start' => '121104099',
		'end' => '121108313',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Mthfsd-007'
	),
	'ENSMUST00000156606' => array(
		'start' => '121102723',
		'end' => '121107643',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Mthfsd-009'
	),
	'ENSMUST00000181504' => array(
		'start' => '121084386',
		'end' => '121088144',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Foxf1-001'
	),
	'ENSMUST00000181096' => array(
		'start' => '121091628',
		'end' => '121094858',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'Gm26572-001'
	),
	'ENSMUST00000184096' => array(
		'start' => '121084609',
		'end' => '121084706',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'Gm27530-201'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_000576_0001' => array(
		'genes_in_region' => array(
			'ENSDARG00000015399' => array(
				[maximum depth reached]
			),
			'ENSDARG00000062042' => array(
				[maximum depth reached]
			),
			'ENSDARG00000094938' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney',
			(int) 3 => 'Liver',
			(int) 4 => 'Muscle',
			(int) 5 => 'Brain',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Muscle',
			(int) 10 => 'Brain',
			(int) 11 => 'Heart',
			(int) 12 => 'Kidney'
		)
	),
	'CIL_000576_0002' => array(
		'genes_in_region' => array(
			'ENSG00000103241' => array(
				[maximum depth reached]
			),
			'ENSG00000103248' => array(
				[maximum depth reached]
			),
			'ENSG00000243697' => array(
				[maximum depth reached]
			),
			'ENSG00000270020' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Breast',
			(int) 5 => 'Colon',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Lung',
			(int) 10 => 'Muscle',
			(int) 11 => 'Ovary',
			(int) 12 => 'Placenta',
			(int) 13 => 'Testis',
			(int) 14 => 'Brain',
			(int) 15 => 'Breast',
			(int) 16 => 'Colon',
			(int) 17 => 'Heart',
			(int) 18 => 'Kidney',
			(int) 19 => 'Liver',
			(int) 20 => 'Muscle',
			(int) 21 => 'Ovary',
			(int) 22 => 'Testis',
			(int) 23 => 'Heart',
			(int) 24 => 'Adipose',
			(int) 25 => 'Breast',
			(int) 26 => 'Colon',
			(int) 27 => 'Heart',
			(int) 28 => 'Kidney',
			(int) 29 => 'Liver',
			(int) 30 => 'Lung',
			(int) 31 => 'Ovary',
			(int) 32 => 'Testis',
			(int) 33 => 'Brain',
			(int) 34 => 'Muscle',
			(int) 35 => 'Breast',
			(int) 36 => 'Kidney',
			(int) 37 => 'Muscle',
			(int) 38 => 'Bladder',
			(int) 39 => 'Brain',
			(int) 40 => 'Heart',
			(int) 41 => 'Muscle',
			(int) 42 => 'Ovary',
			(int) 43 => 'Colon',
			(int) 44 => 'Breast',
			(int) 45 => 'Liver',
			(int) 46 => 'Adrenal',
			(int) 47 => 'Bladder',
			(int) 48 => 'Breast',
			(int) 49 => 'Colon',
			(int) 50 => 'Ovary',
			(int) 51 => 'Adipose',
			(int) 52 => 'Adrenal',
			(int) 53 => 'Brain',
			(int) 54 => 'Breast',
			(int) 55 => 'Colon',
			(int) 56 => 'Heart',
			(int) 57 => 'Kidney',
			(int) 58 => 'Liver',
			(int) 59 => 'Muscle',
			(int) 60 => 'Ovary',
			(int) 61 => 'Testis',
			(int) 62 => 'Adipose',
			(int) 63 => 'Adrenal',
			(int) 64 => 'Brain',
			(int) 65 => 'Breast',
			(int) 66 => 'Colon',
			(int) 67 => 'Heart',
			(int) 68 => 'Kidney',
			(int) 69 => 'Liver',
			(int) 70 => 'Lung',
			(int) 71 => 'Muscle',
			(int) 72 => 'Ovary',
			(int) 73 => 'Placenta',
			(int) 74 => 'Testis'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_000576_0003',
		'tax_id' => '10090',
		'chromosome' => '8',
		'seq_start' => '121084386',
		'seq_end' => '121108392',
		'region_length' => '24006',
		'region_type' => 'CGP',
		'el_id' => 'ENSMUSG00000042812-ENSMUSG00000031816'
	)
)
$gene_el = array(
	'ENST00000602739' => array(
		'Adipose' => array(
			'average_FPKM' => '0.024',
			'stddev_FPKM' => '0.00'
		),
		'Adrenal' => array(
			'average_FPKM' => '0.081',
			'stddev_FPKM' => '0.00'
		),
		'Brain' => array(
			'average_FPKM' => '0.042',
			'stddev_FPKM' => '0.03'
		),
		'Breast' => array(
			'average_FPKM' => '0.027',
			'stddev_FPKM' => '0.02'
		),
		'Colon' => array(
			'average_FPKM' => '0.071',
			'stddev_FPKM' => '0.00'
		),
		'Heart' => array(
			'average_FPKM' => '0.017',
			'stddev_FPKM' => '0.01'
		),
		'Kidney' => array(
			'average_FPKM' => '0.145',
			'stddev_FPKM' => '0.00'
		),
		'Liver' => array(
			'average_FPKM' => '0.021',
			'stddev_FPKM' => '0.01'
		),
		'Lung' => array(
			'average_FPKM' => '0.049',
			'stddev_FPKM' => '0.03'
		),
		'Muscle' => array(
			'average_FPKM' => '0.093',
			'stddev_FPKM' => '0.00'
		),
		'Ovary' => array(
			'average_FPKM' => '0.325',
			'stddev_FPKM' => '0.22'
		),
		'Placenta' => array(
			'average_FPKM' => '0.084',
			'stddev_FPKM' => '0.07'
		),
		'Testis' => array(
			'average_FPKM' => '0.451',
			'stddev_FPKM' => '0.31'
		)
	)
)
$gene_key = 'ENSG00000270020'
$is_first = false
$tran_el = array(
	'Adipose' => array(
		'average_FPKM' => '0.024',
		'stddev_FPKM' => '0.00'
	),
	'Adrenal' => array(
		'average_FPKM' => '0.081',
		'stddev_FPKM' => '0.00'
	),
	'Brain' => array(
		'average_FPKM' => '0.042',
		'stddev_FPKM' => '0.03'
	),
	'Breast' => array(
		'average_FPKM' => '0.027',
		'stddev_FPKM' => '0.02'
	),
	'Colon' => array(
		'average_FPKM' => '0.071',
		'stddev_FPKM' => '0.00'
	),
	'Heart' => array(
		'average_FPKM' => '0.017',
		'stddev_FPKM' => '0.01'
	),
	'Kidney' => array(
		'average_FPKM' => '0.145',
		'stddev_FPKM' => '0.00'
	),
	'Liver' => array(
		'average_FPKM' => '0.021',
		'stddev_FPKM' => '0.01'
	),
	'Lung' => array(
		'average_FPKM' => '0.049',
		'stddev_FPKM' => '0.03'
	),
	'Muscle' => array(
		'average_FPKM' => '0.093',
		'stddev_FPKM' => '0.00'
	),
	'Ovary' => array(
		'average_FPKM' => '0.325',
		'stddev_FPKM' => '0.22'
	),
	'Placenta' => array(
		'average_FPKM' => '0.084',
		'stddev_FPKM' => '0.07'
	),
	'Testis' => array(
		'average_FPKM' => '0.451',
		'stddev_FPKM' => '0.31'
	)
)
$tran_key = 'ENST00000602739'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_000576_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_000576_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSDARG00000015399' => 'forkhead box F1',
		'ENSDARG00000062042' => 'methenyltetrahydrofolate synthetase domain containing',
		'ENSDARG00000094938' => 'si:dkey-199i24.3',
		'ENSG00000103241' => 'forkhead box F1',
		'ENSG00000103248' => 'methenyltetrahydrofolate synthetase domain containing',
		'ENSG00000243697' => null,
		'ENSG00000270020' => null,
		'ENSG00000277360' => null,
		'ENSMUSG00000031816' => 'methenyltetrahydrofolate synthetase domain containing',
		'ENSMUSG00000042812' => 'forkhead box F1',
		'ENSMUSG00000096952' => 'predicted gene, 26572',
		'ENSMUSG00000098560' => 'predicted gene, 27530'
	),
	'gene_name_arr' => array(
		'ENSDARG00000015399' => 'foxf1',
		'ENSDARG00000062042' => 'mthfsd',
		'ENSDARG00000094938' => 'si:dkey-199i24.3',
		'ENSG00000103241' => 'FOXF1',
		'ENSG00000103248' => 'MTHFSD',
		'ENSG00000243697' => 'RP11-463O9.1',
		'ENSG00000270020' => 'RP11-463O9.9',
		'ENSG00000277360' => 'AC009108.2',
		'ENSMUSG00000031816' => 'Mthfsd',
		'ENSMUSG00000042812' => 'Foxf1',
		'ENSMUSG00000096952' => 'Gm26572',
		'ENSMUSG00000098560' => 'Gm27530'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 4 => 'Adrenal',
		(int) 8 => 'Bladder',
		(int) 11 => 'Brain',
		(int) 20 => 'Breast',
		(int) 28 => 'Colon',
		(int) 35 => 'Heart',
		(int) 45 => 'Kidney',
		(int) 54 => 'Liver',
		(int) 62 => 'Lung',
		(int) 65 => 'Muscle',
		(int) 74 => 'Ovary',
		(int) 81 => 'Placenta',
		(int) 83 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 46,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENSDART00000012374' => array(
			'start' => '30791440',
			'end' => '30794568',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'foxf1-001'
		),
		'ENSDART00000099326' => array(
			'start' => '30822490',
			'end' => '30893894',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'mthfsd-201'
		),
		'ENSDART00000139398' => array(
			'start' => '30859634',
			'end' => '30877961',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'mthfsd-002'
		),
		'ENSDART00000146041' => array(
			'start' => '30822506',
			'end' => '30877992',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'mthfsd-001'
		),
		'ENSDART00000143297' => array(
			'start' => '30798711',
			'end' => '30799750',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'si:dkey-199i24.3-001'
		),
		'ENST00000262426' => array(
			'start' => '86510527',
			'end' => '86515418',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'FOXF1-001'
		),
		'ENST00000360900' => array(
			'start' => '86530176',
			'end' => '86555210',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MTHFSD-001'
		),
		'ENST00000381214' => array(
			'start' => '86531972',
			'end' => '86555203',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MTHFSD-003'
		),
		'ENST00000543303' => array(
			'start' => '86531972',
			'end' => '86555203',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MTHFSD-002'
		),
		'ENST00000546093' => array(
			'start' => '86530833',
			'end' => '86555235',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MTHFSD-004'
		),
		'ENST00000561522' => array(
			'start' => '86542117',
			'end' => '86555235',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MTHFSD-010'
		),
		'ENST00000561848' => array(
			'start' => '86552038',
			'end' => '86553721',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'MTHFSD-016'
		),
		'ENST00000561989' => array(
			'start' => '86548067',
			'end' => '86555169',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MTHFSD-012'
		),
		'ENST00000562096' => array(
			'start' => '86532362',
			'end' => '86542545',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'MTHFSD-019'
		),
		'ENST00000562940' => array(
			'start' => '86540720',
			'end' => '86554749',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MTHFSD-005'
		),
		'ENST00000562994' => array(
			'start' => '86542112',
			'end' => '86555235',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MTHFSD-009'
		),
		'ENST00000564364' => array(
			'start' => '86546605',
			'end' => '86555154',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MTHFSD-014'
		),
		'ENST00000565482' => array(
			'start' => '86548488',
			'end' => '86555021',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MTHFSD-015'
		),
		'ENST00000566050' => array(
			'start' => '86531972',
			'end' => '86555203',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'MTHFSD-007'
		),
		'ENST00000566469' => array(
			'start' => '86541535',
			'end' => '86554748',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MTHFSD-018'
		),
		'ENST00000567539' => array(
			'start' => '86532336',
			'end' => '86555235',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'MTHFSD-013'
		),
		'ENST00000568037' => array(
			'start' => '86547146',
			'end' => '86555178',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MTHFSD-017'
		),
		'ENST00000568798' => array(
			'start' => '86542110',
			'end' => '86555235',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'MTHFSD-008'
		),
		'ENST00000569000' => array(
			'start' => '86541739',
			'end' => '86555235',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MTHFSD-011'
		),
		'ENST00000625049' => array(
			'start' => '86530178',
			'end' => '86533800',
			'transcript_biotype' => 'TEC',
			'transcript_name' => 'MTHFSD-006'
		),
		'ENST00000473913' => array(
			'start' => '86525457',
			'end' => '86526252',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'RP11-463O9.1-001'
		),
		'ENST00000602739' => array(
			'start' => '86520383',
			'end' => '86523897',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-463O9.9-001'
		),
		'ENST00000616245' => array(
			'start' => '86510780',
			'end' => '86510877',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'AC009108.2-201'
		),
		'ENSMUST00000047282' => array(
			'start' => '121097940',
			'end' => '121108318',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Mthfsd-002'
		),
		'ENSMUST00000116415' => array(
			'start' => '121097557',
			'end' => '121108327',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Mthfsd-001'
		),
		'ENSMUST00000126431' => array(
			'start' => '121101176',
			'end' => '121108298',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Mthfsd-010'
		),
		'ENSMUST00000128052' => array(
			'start' => '121097555',
			'end' => '121108295',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Mthfsd-003'
		),
		'ENSMUST00000128503' => array(
			'start' => '121104475',
			'end' => '121108343',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Mthfsd-006'
		),
		'ENSMUST00000133037' => array(
			'start' => '121097851',
			'end' => '121108392',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Mthfsd-005'
		),
		'ENSMUST00000133058' => array(
			'start' => '121095012',
			'end' => '121101185',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Mthfsd-015'
		),
		'ENSMUST00000134758' => array(
			'start' => '121098708',
			'end' => '121108288',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Mthfsd-011'
		),
		'ENSMUST00000138908' => array(
			'start' => '121099008',
			'end' => '121105632',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Mthfsd-012'
		),
		'ENSMUST00000139782' => array(
			'start' => '121097557',
			'end' => '121108310',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Mthfsd-008'
		),
		'ENSMUST00000140260' => array(
			'start' => '121097767',
			'end' => '121101593',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Mthfsd-013'
		),
		'ENSMUST00000145991' => array(
			'start' => '121103852',
			'end' => '121105689',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Mthfsd-014'
		),
		'ENSMUST00000149718' => array(
			'start' => '121097937',
			'end' => '121108379',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Mthfsd-004'
		),
		'ENSMUST00000151576' => array(
			'start' => '121104099',
			'end' => '121108313',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Mthfsd-007'
		),
		'ENSMUST00000156606' => array(
			'start' => '121102723',
			'end' => '121107643',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Mthfsd-009'
		),
		'ENSMUST00000181504' => array(
			'start' => '121084386',
			'end' => '121088144',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Foxf1-001'
		),
		'ENSMUST00000181096' => array(
			'start' => '121091628',
			'end' => '121094858',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'Gm26572-001'
		),
		'ENSMUST00000184096' => array(
			'start' => '121084609',
			'end' => '121084706',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'Gm27530-201'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_000576_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_000576_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_000576_0001' => array(
		'genes_in_region' => array(
			'ENSDARG00000015399' => array(
				[maximum depth reached]
			),
			'ENSDARG00000062042' => array(
				[maximum depth reached]
			),
			'ENSDARG00000094938' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney',
			(int) 3 => 'Liver',
			(int) 4 => 'Muscle',
			(int) 5 => 'Brain',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Muscle',
			(int) 10 => 'Brain',
			(int) 11 => 'Heart',
			(int) 12 => 'Kidney'
		)
	),
	'CIL_000576_0002' => array(
		'genes_in_region' => array(
			'ENSG00000103241' => array(
				[maximum depth reached]
			),
			'ENSG00000103248' => array(
				[maximum depth reached]
			),
			'ENSG00000243697' => array(
				[maximum depth reached]
			),
			'ENSG00000270020' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Breast',
			(int) 5 => 'Colon',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Lung',
			(int) 10 => 'Muscle',
			(int) 11 => 'Ovary',
			(int) 12 => 'Placenta',
			(int) 13 => 'Testis',
			(int) 14 => 'Brain',
			(int) 15 => 'Breast',
			(int) 16 => 'Colon',
			(int) 17 => 'Heart',
			(int) 18 => 'Kidney',
			(int) 19 => 'Liver',
			(int) 20 => 'Muscle',
			(int) 21 => 'Ovary',
			(int) 22 => 'Testis',
			(int) 23 => 'Heart',
			(int) 24 => 'Adipose',
			(int) 25 => 'Breast',
			(int) 26 => 'Colon',
			(int) 27 => 'Heart',
			(int) 28 => 'Kidney',
			(int) 29 => 'Liver',
			(int) 30 => 'Lung',
			(int) 31 => 'Ovary',
			(int) 32 => 'Testis',
			(int) 33 => 'Brain',
			(int) 34 => 'Muscle',
			(int) 35 => 'Breast',
			(int) 36 => 'Kidney',
			(int) 37 => 'Muscle',
			(int) 38 => 'Bladder',
			(int) 39 => 'Brain',
			(int) 40 => 'Heart',
			(int) 41 => 'Muscle',
			(int) 42 => 'Ovary',
			(int) 43 => 'Colon',
			(int) 44 => 'Breast',
			(int) 45 => 'Liver',
			(int) 46 => 'Adrenal',
			(int) 47 => 'Bladder',
			(int) 48 => 'Breast',
			(int) 49 => 'Colon',
			(int) 50 => 'Ovary',
			(int) 51 => 'Adipose',
			(int) 52 => 'Adrenal',
			(int) 53 => 'Brain',
			(int) 54 => 'Breast',
			(int) 55 => 'Colon',
			(int) 56 => 'Heart',
			(int) 57 => 'Kidney',
			(int) 58 => 'Liver',
			(int) 59 => 'Muscle',
			(int) 60 => 'Ovary',
			(int) 61 => 'Testis',
			(int) 62 => 'Adipose',
			(int) 63 => 'Adrenal',
			(int) 64 => 'Brain',
			(int) 65 => 'Breast',
			(int) 66 => 'Colon',
			(int) 67 => 'Heart',
			(int) 68 => 'Kidney',
			(int) 69 => 'Liver',
			(int) 70 => 'Lung',
			(int) 71 => 'Muscle',
			(int) 72 => 'Ovary',
			(int) 73 => 'Placenta',
			(int) 74 => 'Testis'
		)
	)
)
$gene_desc_arr = array(
	'ENSDARG00000015399' => 'forkhead box F1',
	'ENSDARG00000062042' => 'methenyltetrahydrofolate synthetase domain containing',
	'ENSDARG00000094938' => 'si:dkey-199i24.3',
	'ENSG00000103241' => 'forkhead box F1',
	'ENSG00000103248' => 'methenyltetrahydrofolate synthetase domain containing',
	'ENSG00000243697' => null,
	'ENSG00000270020' => null,
	'ENSG00000277360' => null,
	'ENSMUSG00000031816' => 'methenyltetrahydrofolate synthetase domain containing',
	'ENSMUSG00000042812' => 'forkhead box F1',
	'ENSMUSG00000096952' => 'predicted gene, 26572',
	'ENSMUSG00000098560' => 'predicted gene, 27530'
)
$gene_name_arr = array(
	'ENSDARG00000015399' => 'foxf1',
	'ENSDARG00000062042' => 'mthfsd',
	'ENSDARG00000094938' => 'si:dkey-199i24.3',
	'ENSG00000103241' => 'FOXF1',
	'ENSG00000103248' => 'MTHFSD',
	'ENSG00000243697' => 'RP11-463O9.1',
	'ENSG00000270020' => 'RP11-463O9.9',
	'ENSG00000277360' => 'AC009108.2',
	'ENSMUSG00000031816' => 'Mthfsd',
	'ENSMUSG00000042812' => 'Foxf1',
	'ENSMUSG00000096952' => 'Gm26572',
	'ENSMUSG00000098560' => 'Gm27530'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_000576_0001',
			'tax_id' => '7955',
			'chromosome' => '18',
			'seq_start' => '30791440',
			'seq_end' => '30893894',
			'region_length' => '102454',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000015399-ENSDARG00000062042'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_000576_0002',
			'tax_id' => '9606',
			'chromosome' => '16',
			'seq_start' => '86510527',
			'seq_end' => '86555235',
			'region_length' => '44708',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000103241-ENSG00000103248'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_000576_0003',
			'tax_id' => '10090',
			'chromosome' => '8',
			'seq_start' => '121084386',
			'seq_end' => '121108392',
			'region_length' => '24006',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000042812-ENSMUSG00000031816'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 4 => 'Adrenal',
	(int) 8 => 'Bladder',
	(int) 11 => 'Brain',
	(int) 20 => 'Breast',
	(int) 28 => 'Colon',
	(int) 35 => 'Heart',
	(int) 45 => 'Kidney',
	(int) 54 => 'Liver',
	(int) 62 => 'Lung',
	(int) 65 => 'Muscle',
	(int) 74 => 'Ovary',
	(int) 81 => 'Placenta',
	(int) 83 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 46
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENSDART00000012374' => array(
		'start' => '30791440',
		'end' => '30794568',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'foxf1-001'
	),
	'ENSDART00000099326' => array(
		'start' => '30822490',
		'end' => '30893894',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'mthfsd-201'
	),
	'ENSDART00000139398' => array(
		'start' => '30859634',
		'end' => '30877961',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'mthfsd-002'
	),
	'ENSDART00000146041' => array(
		'start' => '30822506',
		'end' => '30877992',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'mthfsd-001'
	),
	'ENSDART00000143297' => array(
		'start' => '30798711',
		'end' => '30799750',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'si:dkey-199i24.3-001'
	),
	'ENST00000262426' => array(
		'start' => '86510527',
		'end' => '86515418',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'FOXF1-001'
	),
	'ENST00000360900' => array(
		'start' => '86530176',
		'end' => '86555210',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MTHFSD-001'
	),
	'ENST00000381214' => array(
		'start' => '86531972',
		'end' => '86555203',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MTHFSD-003'
	),
	'ENST00000543303' => array(
		'start' => '86531972',
		'end' => '86555203',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MTHFSD-002'
	),
	'ENST00000546093' => array(
		'start' => '86530833',
		'end' => '86555235',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MTHFSD-004'
	),
	'ENST00000561522' => array(
		'start' => '86542117',
		'end' => '86555235',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MTHFSD-010'
	),
	'ENST00000561848' => array(
		'start' => '86552038',
		'end' => '86553721',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'MTHFSD-016'
	),
	'ENST00000561989' => array(
		'start' => '86548067',
		'end' => '86555169',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MTHFSD-012'
	),
	'ENST00000562096' => array(
		'start' => '86532362',
		'end' => '86542545',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'MTHFSD-019'
	),
	'ENST00000562940' => array(
		'start' => '86540720',
		'end' => '86554749',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MTHFSD-005'
	),
	'ENST00000562994' => array(
		'start' => '86542112',
		'end' => '86555235',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MTHFSD-009'
	),
	'ENST00000564364' => array(
		'start' => '86546605',
		'end' => '86555154',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MTHFSD-014'
	),
	'ENST00000565482' => array(
		'start' => '86548488',
		'end' => '86555021',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MTHFSD-015'
	),
	'ENST00000566050' => array(
		'start' => '86531972',
		'end' => '86555203',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'MTHFSD-007'
	),
	'ENST00000566469' => array(
		'start' => '86541535',
		'end' => '86554748',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MTHFSD-018'
	),
	'ENST00000567539' => array(
		'start' => '86532336',
		'end' => '86555235',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'MTHFSD-013'
	),
	'ENST00000568037' => array(
		'start' => '86547146',
		'end' => '86555178',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MTHFSD-017'
	),
	'ENST00000568798' => array(
		'start' => '86542110',
		'end' => '86555235',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'MTHFSD-008'
	),
	'ENST00000569000' => array(
		'start' => '86541739',
		'end' => '86555235',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MTHFSD-011'
	),
	'ENST00000625049' => array(
		'start' => '86530178',
		'end' => '86533800',
		'transcript_biotype' => 'TEC',
		'transcript_name' => 'MTHFSD-006'
	),
	'ENST00000473913' => array(
		'start' => '86525457',
		'end' => '86526252',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'RP11-463O9.1-001'
	),
	'ENST00000602739' => array(
		'start' => '86520383',
		'end' => '86523897',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-463O9.9-001'
	),
	'ENST00000616245' => array(
		'start' => '86510780',
		'end' => '86510877',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'AC009108.2-201'
	),
	'ENSMUST00000047282' => array(
		'start' => '121097940',
		'end' => '121108318',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Mthfsd-002'
	),
	'ENSMUST00000116415' => array(
		'start' => '121097557',
		'end' => '121108327',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Mthfsd-001'
	),
	'ENSMUST00000126431' => array(
		'start' => '121101176',
		'end' => '121108298',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Mthfsd-010'
	),
	'ENSMUST00000128052' => array(
		'start' => '121097555',
		'end' => '121108295',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Mthfsd-003'
	),
	'ENSMUST00000128503' => array(
		'start' => '121104475',
		'end' => '121108343',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Mthfsd-006'
	),
	'ENSMUST00000133037' => array(
		'start' => '121097851',
		'end' => '121108392',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Mthfsd-005'
	),
	'ENSMUST00000133058' => array(
		'start' => '121095012',
		'end' => '121101185',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Mthfsd-015'
	),
	'ENSMUST00000134758' => array(
		'start' => '121098708',
		'end' => '121108288',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Mthfsd-011'
	),
	'ENSMUST00000138908' => array(
		'start' => '121099008',
		'end' => '121105632',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Mthfsd-012'
	),
	'ENSMUST00000139782' => array(
		'start' => '121097557',
		'end' => '121108310',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Mthfsd-008'
	),
	'ENSMUST00000140260' => array(
		'start' => '121097767',
		'end' => '121101593',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Mthfsd-013'
	),
	'ENSMUST00000145991' => array(
		'start' => '121103852',
		'end' => '121105689',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Mthfsd-014'
	),
	'ENSMUST00000149718' => array(
		'start' => '121097937',
		'end' => '121108379',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Mthfsd-004'
	),
	'ENSMUST00000151576' => array(
		'start' => '121104099',
		'end' => '121108313',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Mthfsd-007'
	),
	'ENSMUST00000156606' => array(
		'start' => '121102723',
		'end' => '121107643',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Mthfsd-009'
	),
	'ENSMUST00000181504' => array(
		'start' => '121084386',
		'end' => '121088144',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Foxf1-001'
	),
	'ENSMUST00000181096' => array(
		'start' => '121091628',
		'end' => '121094858',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'Gm26572-001'
	),
	'ENSMUST00000184096' => array(
		'start' => '121084609',
		'end' => '121084706',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'Gm27530-201'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_000576_0001' => array(
		'genes_in_region' => array(
			'ENSDARG00000015399' => array(
				[maximum depth reached]
			),
			'ENSDARG00000062042' => array(
				[maximum depth reached]
			),
			'ENSDARG00000094938' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney',
			(int) 3 => 'Liver',
			(int) 4 => 'Muscle',
			(int) 5 => 'Brain',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Muscle',
			(int) 10 => 'Brain',
			(int) 11 => 'Heart',
			(int) 12 => 'Kidney'
		)
	),
	'CIL_000576_0002' => array(
		'genes_in_region' => array(
			'ENSG00000103241' => array(
				[maximum depth reached]
			),
			'ENSG00000103248' => array(
				[maximum depth reached]
			),
			'ENSG00000243697' => array(
				[maximum depth reached]
			),
			'ENSG00000270020' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Breast',
			(int) 5 => 'Colon',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Lung',
			(int) 10 => 'Muscle',
			(int) 11 => 'Ovary',
			(int) 12 => 'Placenta',
			(int) 13 => 'Testis',
			(int) 14 => 'Brain',
			(int) 15 => 'Breast',
			(int) 16 => 'Colon',
			(int) 17 => 'Heart',
			(int) 18 => 'Kidney',
			(int) 19 => 'Liver',
			(int) 20 => 'Muscle',
			(int) 21 => 'Ovary',
			(int) 22 => 'Testis',
			(int) 23 => 'Heart',
			(int) 24 => 'Adipose',
			(int) 25 => 'Breast',
			(int) 26 => 'Colon',
			(int) 27 => 'Heart',
			(int) 28 => 'Kidney',
			(int) 29 => 'Liver',
			(int) 30 => 'Lung',
			(int) 31 => 'Ovary',
			(int) 32 => 'Testis',
			(int) 33 => 'Brain',
			(int) 34 => 'Muscle',
			(int) 35 => 'Breast',
			(int) 36 => 'Kidney',
			(int) 37 => 'Muscle',
			(int) 38 => 'Bladder',
			(int) 39 => 'Brain',
			(int) 40 => 'Heart',
			(int) 41 => 'Muscle',
			(int) 42 => 'Ovary',
			(int) 43 => 'Colon',
			(int) 44 => 'Breast',
			(int) 45 => 'Liver',
			(int) 46 => 'Adrenal',
			(int) 47 => 'Bladder',
			(int) 48 => 'Breast',
			(int) 49 => 'Colon',
			(int) 50 => 'Ovary',
			(int) 51 => 'Adipose',
			(int) 52 => 'Adrenal',
			(int) 53 => 'Brain',
			(int) 54 => 'Breast',
			(int) 55 => 'Colon',
			(int) 56 => 'Heart',
			(int) 57 => 'Kidney',
			(int) 58 => 'Liver',
			(int) 59 => 'Muscle',
			(int) 60 => 'Ovary',
			(int) 61 => 'Testis',
			(int) 62 => 'Adipose',
			(int) 63 => 'Adrenal',
			(int) 64 => 'Brain',
			(int) 65 => 'Breast',
			(int) 66 => 'Colon',
			(int) 67 => 'Heart',
			(int) 68 => 'Kidney',
			(int) 69 => 'Liver',
			(int) 70 => 'Lung',
			(int) 71 => 'Muscle',
			(int) 72 => 'Ovary',
			(int) 73 => 'Placenta',
			(int) 74 => 'Testis'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_000576_0003',
		'tax_id' => '10090',
		'chromosome' => '8',
		'seq_start' => '121084386',
		'seq_end' => '121108392',
		'region_length' => '24006',
		'region_type' => 'CGP',
		'el_id' => 'ENSMUSG00000042812-ENSMUSG00000031816'
	)
)
$gene_el = array(
	'ENST00000602739' => array(
		'Adipose' => array(
			'average_FPKM' => '0.024',
			'stddev_FPKM' => '0.00'
		),
		'Adrenal' => array(
			'average_FPKM' => '0.081',
			'stddev_FPKM' => '0.00'
		),
		'Brain' => array(
			'average_FPKM' => '0.042',
			'stddev_FPKM' => '0.03'
		),
		'Breast' => array(
			'average_FPKM' => '0.027',
			'stddev_FPKM' => '0.02'
		),
		'Colon' => array(
			'average_FPKM' => '0.071',
			'stddev_FPKM' => '0.00'
		),
		'Heart' => array(
			'average_FPKM' => '0.017',
			'stddev_FPKM' => '0.01'
		),
		'Kidney' => array(
			'average_FPKM' => '0.145',
			'stddev_FPKM' => '0.00'
		),
		'Liver' => array(
			'average_FPKM' => '0.021',
			'stddev_FPKM' => '0.01'
		),
		'Lung' => array(
			'average_FPKM' => '0.049',
			'stddev_FPKM' => '0.03'
		),
		'Muscle' => array(
			'average_FPKM' => '0.093',
			'stddev_FPKM' => '0.00'
		),
		'Ovary' => array(
			'average_FPKM' => '0.325',
			'stddev_FPKM' => '0.22'
		),
		'Placenta' => array(
			'average_FPKM' => '0.084',
			'stddev_FPKM' => '0.07'
		),
		'Testis' => array(
			'average_FPKM' => '0.451',
			'stddev_FPKM' => '0.31'
		)
	)
)
$gene_key = 'ENSG00000270020'
$is_first = false
$tran_el = array(
	'Adipose' => array(
		'average_FPKM' => '0.024',
		'stddev_FPKM' => '0.00'
	),
	'Adrenal' => array(
		'average_FPKM' => '0.081',
		'stddev_FPKM' => '0.00'
	),
	'Brain' => array(
		'average_FPKM' => '0.042',
		'stddev_FPKM' => '0.03'
	),
	'Breast' => array(
		'average_FPKM' => '0.027',
		'stddev_FPKM' => '0.02'
	),
	'Colon' => array(
		'average_FPKM' => '0.071',
		'stddev_FPKM' => '0.00'
	),
	'Heart' => array(
		'average_FPKM' => '0.017',
		'stddev_FPKM' => '0.01'
	),
	'Kidney' => array(
		'average_FPKM' => '0.145',
		'stddev_FPKM' => '0.00'
	),
	'Liver' => array(
		'average_FPKM' => '0.021',
		'stddev_FPKM' => '0.01'
	),
	'Lung' => array(
		'average_FPKM' => '0.049',
		'stddev_FPKM' => '0.03'
	),
	'Muscle' => array(
		'average_FPKM' => '0.093',
		'stddev_FPKM' => '0.00'
	),
	'Ovary' => array(
		'average_FPKM' => '0.325',
		'stddev_FPKM' => '0.22'
	),
	'Placenta' => array(
		'average_FPKM' => '0.084',
		'stddev_FPKM' => '0.07'
	),
	'Testis' => array(
		'average_FPKM' => '0.451',
		'stddev_FPKM' => '0.31'
	)
)
$tran_key = 'ENST00000602739'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Source ID		Type	Tax ID	Position
ENSMUSG00000042812-ENSMUSG00000031816		CGP	10090	8:121084386-121108392
Gene		Transcript	Position	Biotype

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Danio rerio Ensembl (Zv9)

Homo sapiens Ensembl (GRCh38)

Mus musculus Ensembl (GRCm38)

Expression Patterns

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