C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005FB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000137806-ENSG00000137815 CGP 9606 15:41387349-41483563
GeneTranscriptPositionBiotype
ENSG00000137806 (NDUFAF1)
NADH dehydrogenase (ubiquinone) complex I, assembly factor 1 		ENST00000260361 (NDUFAF1-001) 41387349-41402444 protein_coding
ENST00000558719 (NDUFAF1-004) 41396487-41402442 protein_coding
ENST00000559127 (NDUFAF1-002) 41387494-41402459 nonsense_mediated_decay
ENST00000560978 (NDUFAF1-003) 41394991-41402519 protein_coding
ENSG00000137815 (RTF1)
Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) 		ENST00000389629 (RTF1-001) 41417104-41483563 protein_coding
ENST00000462276 (RTF1-002) 41417132-41452994 processed_transcript
ENST00000473214 (RTF1-003) 41474587-41477249 retained_intron
ENST00000558117 (RTF1-005) 41477189-41478943 retained_intron
ENST00000558298 (RTF1-004) 41408408-41452942 processed_transcript
ENST00000560447 (RTF1-007) 41474669-41477578 protein_coding
ENST00000561076 (RTF1-006) 41478485-41480290 retained_intron
CIL_0005FB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027305-ENSMUSG00000027304 CGP 10090 2:119655446-119735407
GeneTranscriptPositionBiotype
ENSMUSG00000027304 (Rtf1)
Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) 		ENSMUST00000028767 (Rtf1-001) 119675068-119735407 protein_coding
ENSMUST00000126984 (Rtf1-004) 119726684-119727652 retained_intron
ENSMUST00000136321 (Rtf1-002) 119675072-119692221 processed_transcript
ENSMUST00000149904 (Rtf1-003) 119710996-119712462 retained_intron
ENSMUSG00000027305 (Ndufaf1)
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1 		ENSMUST00000028768 (Ndufaf1-201) 119655451-119662798 protein_coding
ENSMUST00000110801 (Ndufaf1-001) 119655446-119662820 protein_coding
ENSMUST00000110802 (Ndufaf1-002) 119655446-119662821 protein_coding
ENSMUST00000131596 (Ndufaf1-003) 119660438-119662827 processed_transcript
ENSMUST00000154127 (Ndufaf1-004) 119660258-119662812 processed_transcript
ENSMUSG00000081416 (Gm14383)
predicted gene 14383 		ENSMUST00000121637 (Gm14383-001) 119669159-119669544 processed_pseudogene
ENSMUSG00000082029 (H3f3c)
H3 histone, family 3C 		ENSMUST00000119459 (H3f3c-001) 119665626-119666036 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005FB_0001ENSG00000137806ENST00000260361ENST00000558719ENST00000559127ENST00000560978ENSG00000137815ENST00000389629ENST00000462276ENST00000473214ENST00000558117ENST00000558298ENST00000560447ENST00000561076CIL_0005FB_0002ENSMUSG00000027304ENSMUST00000028767ENSMUST00000126984ENSMUST00000136321ENSMUST00000149904ENSMUSG00000027305ENSMUST00000028768ENSMUST00000110801ENSMUST00000110802ENSMUST00000131596ENSMUST00000154127ENSMUSG00000081416ENSMUST00000121637ENSMUSG00000082029ENSMUST00000119459
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005FB_0001ENSG00000137806ENST00000260361ENST00000558719ENST00000559127ENST00000560978ENSG00000137815ENST00000389629ENST00000560447CIL_0005FB_0002ENSMUSG00000027304ENSMUST00000028767ENSMUSG00000027305ENSMUST00000028768ENSMUST00000110801ENSMUST00000110802ENSMUST00000154127ENSMUSG00000081416ENSMUST00000121637ENSMUSG00000082029ENSMUST00000119459
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000137806 ENST00000260361 1.239±0.00 N/A 1.150±0.00 2.412±0.00 2.828±0.00 2.764±2.06 18.733±0.00 N/A 2.876±0.00 N/A N/A 1.903±1.20 3.358±1.07 15.774±2.59
ENST00000558719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.624±0.00 7.507±0.00 36.781±0.00
ENST00000559127 1.250±0.00 2.813±0.00 N/A N/A N/A N/A N/A 2.068±0.00 N/A 0.470±0.00 N/A 0.552±0.00 N/A N/A
ENST00000560978 N/A N/A 0.666±0.00 2.080±0.00 0.960±0.00 0.849±0.00 3.219±0.00 N/A N/A N/A 2.808±0.00 2.046±0.59 5.272±3.84 23.377±0.00
ENSG00000137815 ENST00000389629 1.598±0.00 14.074±0.00 1.882±0.00 2.268±0.60 6.153±3.49 1.183±0.85 1.515±0.37 1.378±0.12 0.880±0.37 7.770±0.00 7.380±5.13 6.634±4.24 7.937±7.64 9.268±6.97
ENST00000462276 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473214 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558117 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560447 N/A N/A N/A N/A N/A N/A N/A 5.900±0.00 N/A N/A N/A N/A N/A N/A
ENST00000561076 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027304 ENSMUST00000028767 4.361±1.46 4.508±3.16 7.856±0.23 14.479±1.40 4.513±1.49 4.111±1.68 4.224±0.65 4.662±1.24 4.746±2.50 4.322±0.95 6.834±0.18 6.573±3.09 21.855±15.17 5.892±0.48
ENSMUST00000126984 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136321 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000027305 ENSMUST00000028768 1.330±0.35 2.005±0.80 1.610±0.36 1.446±0.17 2.106±0.52 1.828±0.31 4.315±1.43 3.295±0.57 3.254±1.23 1.172±0.47 7.830±1.89 2.066±0.46 3.098±0.67 2.392±0.98
ENSMUST00000110801 2.395±0.08 2.076±0.00 1.508±0.43 1.432±0.52 1.323±0.32 N/A 3.197±2.43 3.669±0.33 3.124±1.22 1.216±0.63 3.153±0.33 2.085±0.75 1.375±0.68 0.631±0.15
ENSMUST00000110802 2.943±0.96 0.729±0.15 4.781±0.37 3.214±1.88 2.739±1.83 1.802±0.00 5.159±0.23 2.848±1.27 4.417±1.82 1.175±0.24 9.719±1.48 5.040±4.28 7.788±3.00 1.499±0.57
ENSMUST00000131596 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154127 N/A N/A N/A N/A 1.380±0.28 0.732±0.00 N/A N/A N/A 0.546±0.00 N/A 1.241±0.61 N/A N/A
ENSMUSG00000081416 ENSMUST00000121637 0.157±0.00 N/A N/A N/A N/A N/A N/A N/A 0.042±0.00 N/A N/A N/A N/A 0.216±0.07
ENSMUSG00000082029 ENSMUST00000119459 3.827±1.06 N/A 1.150±0.66 15.460±8.39 2.388±0.91 0.553±0.18 1.561±1.03 0.920±0.55 16.540±24.21 1.961±1.15 0.304±0.14 2.339±0.57 0.444±0.18 0.896±0.64

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