C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005GZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000031768-ENSDARG00000086670 CGP 7955 25:34896334-35055335
GeneTranscriptPositionBiotype
ENSDARG00000031768 (roraa)
RAR-related orphan receptor A, paralog a 		ENSDART00000121449 (roraa-201) 34896334-35011591 protein_coding
ENSDART00000148537 (roraa-001) 34986538-35016527 protein_coding
ENSDARG00000086670 (narg2)
NMDA receptor regulated 2 		ENSDART00000121498 (narg2-001) 35018963-35055335 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0005GZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032238-ENSMUSG00000032235 CGP 10090 9:68653786-69433122
GeneTranscriptPositionBiotype
ENSMUSG00000032235 (Narg2)
interactor of little elongation complex ELL subunit 2 		ENSMUST00000034761 (Narg2-001) 69397906-69433122 protein_coding
ENSMUST00000117246 (Narg2-002) 69397937-69407953 protein_coding
ENSMUST00000117610 (Narg2-003) 69397933-69407696 protein_coding
ENSMUST00000125938 (Narg2-006) 69397927-69407322 protein_coding
ENSMUST00000131233 (Narg2-008) 69397957-69410178 nonsense_mediated_decay
ENSMUST00000142743 (Narg2-004) 69397923-69432070 retained_intron
ENSMUST00000145538 (Narg2-007) 69397935-69407334 protein_coding
ENSMUST00000146368 (Narg2-009) 69416715-69425705 processed_transcript
ENSMUST00000147558 (Narg2-010) 69416873-69427024 retained_intron
ENSMUST00000151667 (Narg2-005) 69398648-69407181 retained_intron
ENSMUSG00000032238 (Rora)
RAR-related orphan receptor alpha 		ENSMUST00000034766 (Rora-001) 68653786-69388246 protein_coding
ENSMUST00000113624 (Rora-002) 69289682-69379809 protein_coding
ENSMUST00000132355 (Rora-005) 69195541-69250834 processed_transcript
ENSMUST00000140351 (Rora-003) 68653786-68664967 processed_transcript
ENSMUST00000143507 (Rora-004) 68655303-68664180 processed_transcript
ENSMUST00000174296 (Rora-006) 68653891-69364494 nonsense_mediated_decay

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005GZ_0001ENSDARG00000031768ENSDART00000121449ENSDART00000148537ENSDARG00000086670ENSDART00000121498CIL_0005GZ_0002ENSMUSG00000032235ENSMUST00000034761ENSMUST00000117246ENSMUST00000117610ENSMUST00000125938ENSMUST00000131233ENSMUST00000142743ENSMUST00000145538ENSMUST00000146368ENSMUST00000147558ENSMUST00000151667ENSMUSG00000032238ENSMUST00000034766ENSMUST00000113624ENSMUST00000132355ENSMUST00000140351ENSMUST00000143507ENSMUST00000174296
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005GZ_0001ENSDARG00000031768ENSDART00000121449ENSDART00000148537ENSDARG00000086670ENSDART00000121498CIL_0005GZ_0002ENSMUSG00000032235ENSMUST00000034761ENSMUST00000142743ENSMUSG00000032238ENSMUST00000034766ENSMUST00000113624ENSMUST00000140351ENSMUST00000174296
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000031768 ENSDART00000121449 N/A N/A N/A N/A N/A N/A N/A N/A 0.012±0.00 N/A N/A N/A N/A N/A
ENSDART00000148537 N/A N/A N/A 10.127±2.94 N/A N/A 1.016±0.32 0.299±0.03 0.040±0.00 N/A 0.161±0.00 N/A N/A N/A
ENSDARG00000086670 ENSDART00000121498 N/A N/A N/A 1.115±0.73 N/A N/A 1.708±1.03 1.618±1.04 0.387±0.00 N/A 0.447±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032235 ENSMUST00000034761 0.964±0.16 N/A 2.652±0.22 1.833±1.21 0.918±0.00 1.399±0.30 0.517±0.21 0.657±0.12 2.138±1.17 0.802±0.13 0.583±0.20 2.283±1.04 2.609±1.22 0.824±0.23
ENSMUST00000117246 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000117610 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125938 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142743 0.457±0.13 0.482±0.03 0.259±0.00 0.604±0.04 0.292±0.00 0.267±0.11 0.163±0.04 0.398±0.00 0.353±0.08 0.593±0.00 0.095±0.00 0.608±0.06 0.386±0.06 0.215±0.08
ENSMUST00000145538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146368 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147558 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151667 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000032238 ENSMUST00000034766 2.727±0.29 7.506±1.80 0.909±0.00 2.260±1.43 2.374±0.61 1.221±0.21 1.324±0.51 2.534±1.01 3.074±1.57 4.127±0.45 0.991±0.09 2.320±0.42 1.146±0.73 0.759±0.21
ENSMUST00000113624 2.742±0.31 9.689±4.65 N/A 11.281±0.00 2.487±0.85 1.066±0.42 1.844±0.50 4.272±0.99 4.138±1.01 5.252±0.51 N/A 2.968±1.71 2.089±1.43 12.611±0.80
ENSMUST00000132355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140351 N/A N/A N/A N/A N/A N/A N/A N/A 0.623±0.13 N/A N/A N/A N/A N/A
ENSMUST00000143507 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174296 N/A 6.672±0.00 N/A N/A 3.276±0.00 1.251±0.00 N/A N/A N/A N/A N/A 6.373±1.16 N/A N/A

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