C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005IY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000180340-ENSG00000180336 CGP 9606 17:44557459-44690308
GeneTranscriptPositionBiotype
ENSG00000180329 (CCDC43)
coiled-coil domain containing 43 		ENST00000315286 (CCDC43-001) 44677458-44689762 protein_coding
ENST00000457422 (CCDC43-003) 44677440-44689779 protein_coding
ENST00000588210 (CCDC43-002) 44677483-44689763 protein_coding
ENST00000588687 (CCDC43-005) 44673069-44689725 protein_coding
ENST00000592333 (CCDC43-004) 44681731-44689745 retained_intron
ENSG00000180340 (FZD2)
frizzled class receptor 2 		ENST00000315323 (FZD2-001) 44557459-44559570 protein_coding
ENSG00000266979 (LINC01180)
long intergenic non-protein coding RNA 1180 		ENST00000589259 (LINC01180-001) 44646364-44650349 lincRNA
ENSG00000267160 (RP11-1072C15.4)
 ENST00000591628 (RP11-1072C15.4-001) 44673689-44676257 antisense
ENSG00000267384 (SMCO4P1)
single-pass membrane protein with coiled-coil domains 4 pseudogene 1 		ENST00000592909 (SMCO4P1-001) 44645411-44645587 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0005IY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000050288-ENSMUSG00000051455 CGP 10090 11:102604396-102682237
GeneTranscriptPositionBiotype
ENSMUSG00000050288 (Fzd2)
frizzled homolog 2 (Drosophila) 		ENSMUST00000057893 (Fzd2-001) 102604396-102608058 protein_coding
ENSMUSG00000051455 (Gm1564)
predicted gene 1564 		ENSMUST00000100378 (Gm1564-001) 102665588-102682237 protein_coding
ENSMUST00000155813 (Gm1564-002) 102665623-102674124 processed_transcript
ENSMUST00000156590 (Gm1564-003) 102663716-102675308 protein_coding
ENSMUSG00000080992 (Psmb5-ps)
proteasome (prosome, macropain) subunit, beta type 5, pseudogene 		ENSMUST00000119744 (Psmb5-ps-001) 102659128-102659925 processed_pseudogene
ENSMUSG00000086105 (Gm11636)
predicted gene 11636 		ENSMUST00000152172 (Gm11636-001) 102614892-102616546 lincRNA
ENSMUSG00000086283 (2810433D01Rik)
RIKEN cDNA 2810433D01 gene 		ENSMUST00000147541 (2810433D01Rik-002) 102621318-102624366 lincRNA
ENSMUST00000154798 (2810433D01Rik-001) 102619796-102624416 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005IY_0001ENSG00000180329ENST00000315286ENST00000457422ENST00000588210ENST00000588687ENST00000592333ENSG00000180340ENST00000315323ENSG00000266979ENST00000589259ENSG00000267160ENST00000591628ENSG00000267384ENST00000592909CIL_0005IY_0002ENSMUSG00000050288ENSMUST00000057893ENSMUSG00000051455ENSMUST00000100378ENSMUST00000155813ENSMUST00000156590ENSMUSG00000080992ENSMUST00000119744ENSMUSG00000086105ENSMUST00000152172ENSMUSG00000086283ENSMUST00000147541ENSMUST00000154798
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005IY_0001ENSG00000180329ENST00000315286ENST00000457422ENST00000588210ENST00000592333ENSG00000180340ENST00000315323ENSG00000266979ENST00000589259ENSG00000267160ENST00000591628ENSG00000267384ENST00000592909CIL_0005IY_0002ENSMUSG00000050288ENSMUST00000057893ENSMUSG00000051455ENSMUST00000100378ENSMUST00000155813ENSMUST00000156590ENSMUSG00000080992ENSMUST00000119744ENSMUSG00000086105ENSMUST00000152172ENSMUSG00000086283ENSMUST00000147541ENSMUST00000154798
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000180329 ENST00000315286 4.817±0.00 4.964±0.00 0.906±0.00 6.118±2.51 3.582±1.19 3.809±0.25 4.008±0.85 2.215±1.91 1.540±0.86 4.338±0.00 6.476±5.14 5.420±1.62 4.130±0.55 7.595±0.00
ENST00000457422 1.455±0.00 1.873±0.00 1.259±0.00 2.173±0.33 1.689±0.29 N/A 3.164±0.00 N/A 1.222±0.59 1.263±0.00 4.014±1.05 2.658±1.87 1.938±1.58 N/A
ENST00000588210 N/A N/A N/A N/A N/A 1.322±0.00 N/A N/A N/A 0.977±0.00 N/A 4.793±0.00 2.058±0.00 N/A
ENST00000588687 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592333 N/A N/A N/A N/A N/A N/A N/A 0.945±0.00 N/A N/A N/A 4.917±0.00 N/A N/A
ENSG00000180340 ENST00000315323 0.962±0.00 1.207±0.00 N/A 0.191±0.00 0.772±0.00 0.663±0.00 0.567±0.00 2.908±0.00 0.385±0.21 0.669±0.41 0.297±0.00 6.309±2.42 5.660±1.89 1.897±0.78
ENSG00000266979 ENST00000589259 0.011±0.00 0.131±0.00 N/A 0.109±0.00 0.076±0.00 0.022±0.00 0.024±0.00 0.024±0.00 0.008±0.00 0.040±0.00 0.013±0.00 0.023±0.02 N/A 0.482±0.18
ENSG00000267160 ENST00000591628 N/A N/A N/A N/A N/A N/A N/A 0.136±0.00 N/A N/A N/A N/A N/A 13.144±2.79
ENSG00000267384 ENST00000592909 0.330±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.185±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000050288 ENSMUST00000057893 27.838±20.70 8.445±0.81 27.364±4.50 12.092±9.19 12.801±5.90 15.078±1.38 3.792±1.04 4.234±1.21 0.528±0.50 22.062±1.75 0.480±0.11 30.857±15.73 2.549±2.86 0.676±0.40
ENSMUSG00000051455 ENSMUST00000100378 0.031±0.00 0.083±0.05 N/A 0.017±0.00 0.027±0.01 0.045±0.01 0.024±0.01 0.032±0.00 0.023±0.01 0.044±0.01 0.016±0.01 0.055±0.03 0.020±0.01 7.675±0.37
ENSMUST00000155813 N/A N/A 0.089±0.00 N/A N/A N/A N/A N/A N/A 0.060±0.00 N/A N/A 0.080±0.04 20.343±10.23
ENSMUST00000156590 N/A 0.159±0.05 0.024±0.00 0.017±0.00 N/A N/A 0.006±0.00 N/A 0.009±0.00 N/A 0.026±0.02 N/A N/A N/A
ENSMUSG00000080992 ENSMUST00000119744 N/A N/A N/A N/A N/A 0.131±0.00 N/A 0.056±0.00 N/A N/A N/A N/A N/A N/A
ENSMUSG00000086105 ENSMUST00000152172 0.295±0.00 N/A N/A 0.091±0.04 0.551±0.37 0.543±0.47 0.097±0.00 0.136±0.03 0.038±0.02 0.638±0.27 0.065±0.01 0.318±0.18 0.163±0.10 0.040±0.00
ENSMUSG00000086283 ENSMUST00000147541 2.014±1.11 0.316±0.09 N/A 0.097±0.05 1.183±0.44 0.858±0.50 0.324±0.18 0.733±0.35 0.156±0.04 1.660±0.07 0.132±0.04 0.763±0.46 0.592±0.36 0.157±0.06
ENSMUST00000154798 0.451±0.35 0.254±0.16 1.555±0.05 0.095±0.05 0.535±0.14 0.340±0.17 0.076±0.03 0.600±0.19 0.057±0.02 1.366±0.36 0.075±0.04 0.432±0.25 0.416±0.41 0.060±0.03

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