C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005J4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000108840-ENSG00000125319 CGP 9606 17:44076746-44162476
GeneTranscriptPositionBiotype
ENSG00000108840 (HDAC5)
histone deacetylase 5 		ENST00000225983 (HDAC5-003) 44076746-44123638 protein_coding
ENST00000336057 (HDAC5-001) 44076754-44123618 protein_coding
ENST00000586339 (HDAC5-013) 44078608-44079336 retained_intron
ENST00000586802 (HDAC5-002) 44078294-44123275 protein_coding
ENST00000587135 (HDAC5-008) 44093781-44123628 protein_coding
ENST00000587776 (HDAC5-011) 44091293-44093505 retained_intron
ENST00000588261 (HDAC5-010) 44088448-44093187 protein_coding
ENST00000588419 (HDAC5-012) 44082584-44086755 retained_intron
ENST00000588703 (HDAC5-007) 44093664-44123702 protein_coding
ENST00000591714 (HDAC5-009) 44093781-44111341 protein_coding
ENST00000592385 (HDAC5-004) 44081571-44092183 retained_intron
ENST00000593013 (HDAC5-005) 44081597-44085355 retained_intron
ENSG00000125319 (C17orf53)
chromosome 17 open reading frame 53 		ENST00000245382 (C17orf53-003) 44142022-44162476 protein_coding
ENST00000319977 (C17orf53-002) 44141906-44162476 protein_coding
ENST00000585683 (C17orf53-001) 44141908-44162285 protein_coding
ENST00000588073 (C17orf53-005) 44154360-44162004 retained_intron
ENST00000588434 (C17orf53-004) 44147771-44152767 retained_intron
ENSG00000267638 (RP11-546M21.6)
 ENST00000585899 (RP11-546M21.6-001) 44115912-44120595 antisense
CIL_0005J4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000008855-ENSMUSG00000034773 CGP 10090 11:102194432-102265187
GeneTranscriptPositionBiotype
ENSMUSG00000034773 (BC030867)
cDNA sequence BC030867 		ENSMUST00000100392 (BC030867-002) 102248882-102265187 protein_coding
ENSMUST00000133930 (BC030867-001) 102248882-102265187 nonsense_mediated_decay
ENSMUST00000140040 (BC030867-003) 102261964-102265187 processed_transcript
ENSMUST00000148867 (BC030867-004) 102255652-102260616 processed_transcript
ENSMUST00000152897 (BC030867-005) 102255656-102260614 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005J4_0001ENSG00000108840ENST00000225983ENST00000336057ENST00000586339ENST00000586802ENST00000587135ENST00000587776ENST00000588261ENST00000588419ENST00000588703ENST00000591714ENST00000592385ENST00000593013ENSG00000125319ENST00000245382ENST00000319977ENST00000585683ENST00000588073ENST00000588434ENSG00000267638ENST00000585899CIL_0005J4_0002ENSMUSG00000034773ENSMUST00000100392ENSMUST00000133930ENSMUST00000140040ENSMUST00000148867ENSMUST00000152897
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005J4_0001ENSG00000108840ENST00000225983ENST00000336057ENST00000586802ENST00000587776ENST00000588261ENST00000588419ENST00000592385ENST00000593013ENSG00000125319ENST00000245382ENST00000319977ENST00000585683ENST00000588073ENST00000588434ENSG00000267638ENST00000585899CIL_0005J4_0002ENSMUSG00000034773ENSMUST00000100392ENSMUST00000133930ENSMUST00000140040ENSMUST00000148867ENSMUST00000152897
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000108840 ENST00000225983 N/A N/A N/A N/A 2.628±0.00 4.390±0.00 N/A N/A N/A N/A N/A 5.113±0.38 N/A 2.393±0.82
ENST00000336057 N/A N/A N/A N/A N/A N/A N/A N/A 0.456±0.00 N/A N/A N/A N/A N/A
ENST00000586339 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586802 15.242±0.00 8.860±0.00 0.727±0.00 11.006±7.69 9.402±7.85 11.564±10.86 6.691±5.14 7.741±7.04 2.574±1.70 16.082±15.23 28.342±26.70 16.742±8.74 17.225±5.90 11.345±7.21
ENST00000587135 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587776 N/A N/A N/A N/A N/A 1.549±0.00 3.058±0.00 N/A N/A N/A 2.546±0.00 N/A N/A N/A
ENST00000588261 N/A N/A 2.692±0.00 N/A N/A N/A N/A 1.206±0.00 N/A 3.722±0.00 N/A 10.661±0.00 N/A N/A
ENST00000588419 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.641±0.00 N/A 52.300±0.00 28.911±0.00 13.734±0.00
ENST00000588703 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591714 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592385 N/A 2.522±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000593013 N/A N/A 0.756±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000125319 ENST00000245382 N/A N/A N/A 0.323±0.00 N/A 0.065±0.00 N/A N/A 0.051±0.02 N/A 0.141±0.00 N/A 0.424±0.00 N/A
ENST00000319977 N/A N/A N/A N/A 0.641±0.00 N/A 0.118±0.00 N/A N/A 0.031±0.00 N/A 0.146±0.00 0.563±0.48 4.144±0.00
ENST00000585683 0.335±0.00 N/A N/A N/A N/A 0.020±0.00 0.203±0.00 0.181±0.00 N/A N/A N/A 2.463±1.59 0.710±0.37 4.283±1.88
ENST00000588073 N/A N/A N/A 0.054±0.00 N/A 0.172±0.00 N/A N/A 0.153±0.00 N/A N/A 10.924±0.00 N/A 5.099±0.00
ENST00000588434 N/A N/A N/A N/A 0.087±0.00 N/A 0.049±0.02 N/A N/A 0.054±0.00 N/A N/A N/A N/A
ENSG00000267638 ENST00000585899 0.061±0.00 0.134±0.00 N/A 0.308±0.00 0.072±0.00 0.197±0.00 0.182±0.00 N/A 0.227±0.00 N/A N/A 0.142±0.00 N/A 0.121±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034773 ENSMUST00000100392 0.550±0.45 0.152±0.06 0.080±0.03 1.453±1.19 0.265±0.10 0.712±0.17 0.050±0.01 0.095±0.06 3.099±3.32 0.118±0.05 0.031±0.01 1.924±0.78 2.165±1.19 11.231±5.04
ENSMUST00000133930 N/A 0.079±0.00 0.055±0.00 N/A N/A N/A 0.052±0.03 N/A N/A 0.034±0.00 N/A 0.236±0.04 0.106±0.00 1.696±0.83
ENSMUST00000140040 N/A 0.331±0.15 N/A N/A 0.351±0.03 0.799±0.16 0.136±0.03 0.187±0.07 0.141±0.09 0.219±0.04 0.087±0.00 1.533±0.42 1.641±0.00 N/A
ENSMUST00000148867 N/A 0.139±0.00 N/A N/A N/A N/A 0.055±0.00 N/A N/A 0.115±0.00 0.104±0.00 N/A N/A 8.013±0.00
ENSMUST00000152897 N/A 0.251±0.01 N/A N/A N/A N/A N/A 0.093±0.00 N/A N/A N/A 1.029±0.00 N/A N/A

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