C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005K3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000177427-ENSG00000177302 CGP 9606 17:18260534-18315007
GeneTranscriptPositionBiotype
ENSG00000177302 (TOP3A)
topoisomerase (DNA) III alpha 		ENST00000321105 (TOP3A-001) 18273967-18314993 protein_coding
ENST00000461127 (TOP3A-004) 18302604-18314944 nonsense_mediated_decay
ENST00000469739 (TOP3A-003) 18273967-18307159 retained_intron
ENST00000472959 (TOP3A-005) 18306588-18314960 retained_intron
ENST00000477508 (TOP3A-006) 18280175-18282813 retained_intron
ENST00000489131 (TOP3A-008) 18272838-18274877 protein_coding
ENST00000493648 (TOP3A-007) 18271428-18274958 nonsense_mediated_decay
ENST00000542570 (TOP3A-201) 18273921-18315007 protein_coding
ENST00000580095 (TOP3A-020) 18274804-18314703 protein_coding
ENST00000580713 (TOP3A-014) 18308682-18314812 retained_intron
ENST00000581536 (TOP3A-012) 18285428-18302361 nonsense_mediated_decay
ENST00000582122 (TOP3A-019) 18282791-18290916 nonsense_mediated_decay
ENST00000582230 (TOP3A-017) 18307526-18314969 processed_transcript
ENST00000582981 (TOP3A-009) 18274724-18315007 nonsense_mediated_decay
ENST00000583328 (TOP3A-018) 18306550-18314774 retained_intron
ENST00000583804 (TOP3A-013) 18290557-18303090 retained_intron
ENST00000584582 (TOP3A-010) 18274228-18314993 nonsense_mediated_decay
ENST00000584669 (TOP3A-011) 18302686-18314930 processed_transcript
ENST00000584887 (TOP3A-016) 18307532-18314970 processed_transcript
ENST00000585031 (TOP3A-015) 18306934-18314974 nonsense_mediated_decay
ENSG00000177427 (MIEF2)
mitochondrial elongation factor 2 		ENST00000323019 (MIEF2-001) 18260534-18266552 protein_coding
ENST00000395703 (MIEF2-004) 18260604-18263515 protein_coding
ENST00000395704 (MIEF2-002) 18260597-18266204 protein_coding
ENST00000395706 (MIEF2-003) 18261110-18265781 protein_coding
ENST00000577216 (MIEF2-007) 18260616-18264127 processed_transcript
ENST00000578174 (MIEF2-005) 18260597-18263546 protein_coding
ENST00000578621 (MIEF2-006) 18260645-18263802 protein_coding
ENST00000579341 (MIEF2-011) 18260661-18263881 protein_coding
ENST00000583745 (MIEF2-008) 18260662-18263181 retained_intron
ENSG00000228000 (RPL7AP65)
ribosomal protein L7a pseudogene 65 		ENST00000418183 (RPL7AP65-001) 18311904-18312651 processed_pseudogene
ENSG00000237382 (RPL21P121)
ribosomal protein L21 pseudogene 121 		ENST00000439258 (RPL21P121-001) 18312760-18313533 processed_pseudogene
ENSG00000260647 (RP1-178F10.1)
 ENST00000566532 (RP1-178F10.1-001) 18268080-18268828 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0005K3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000018599-ENSMUSG00000002814 CGP 10090 11:60728398-60777365
GeneTranscriptPositionBiotype
ENSMUSG00000002814 (Top3a)
topoisomerase (DNA) III alpha 		ENSMUST00000002891 (Top3a-002) 60740058-60777365 protein_coding
ENSMUST00000102668 (Top3a-003) 60741891-60777265 protein_coding
ENSMUST00000117743 (Top3a-001) 60740059-60777287 protein_coding
ENSMUST00000120417 (Top3a-006) 60742234-60777264 protein_coding
ENSMUST00000124799 (Top3a-005) 60749457-60752678 retained_intron
ENSMUST00000130068 (Top3a-004) 60761732-60777299 protein_coding
ENSMUSG00000018599 (Mief2)
mitochondrial elongation factor 2 		ENSMUST00000018743 (Mief2-001) 60728398-60732951 protein_coding
ENSMUST00000146159 (Mief2-002) 60728445-60730663 processed_transcript
ENSMUST00000154890 (Mief2-003) 60728443-60730996 retained_intron
ENSMUSG00000089581 (Gm23341)
predicted gene, 23341 		ENSMUST00000158956 (Gm23341-201) 60735861-60735957 snRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005K3_0001ENSG00000177302ENST00000321105ENST00000469739ENST00000542570ENST00000580095ENST00000582981ENST00000583328ENST00000583804ENST00000584582ENST00000585031ENSG00000177427ENST00000323019ENST00000395704ENST00000395706ENST00000578174ENST00000578621ENST00000579341ENSG00000228000ENST00000418183ENSG00000237382ENST00000439258ENSG00000260647ENST00000566532CIL_0005K3_0002ENSMUSG00000002814ENSMUST00000002891ENSMUST00000102668ENSMUST00000117743ENSMUST00000120417ENSMUSG00000018599ENSMUST00000018743ENSMUST00000154890ENSMUSG00000089581ENSMUST00000158956
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000177302 ENST00000321105 N/A N/A N/A N/A 0.999±0.00 1.129±0.00 0.400±0.28 N/A 1.157±0.14 N/A 1.111±0.00 1.385±0.34 2.300±1.02 N/A
ENST00000461127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469739 N/A N/A N/A N/A N/A 1.057±0.00 N/A N/A N/A N/A 0.168±0.00 2.605±0.00 2.229±0.00 N/A
ENST00000472959 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477508 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489131 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493648 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542570 1.128±0.00 3.064±0.00 N/A N/A N/A N/A N/A 0.919±0.00 N/A 1.034±0.00 N/A 0.738±0.00 N/A N/A
ENST00000580095 N/A N/A N/A N/A 0.402±0.00 N/A N/A 0.392±0.00 1.386±0.00 N/A N/A 2.021±0.33 2.857±0.00 3.565±2.37
ENST00000580713 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582122 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582230 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582981 N/A N/A N/A N/A N/A N/A N/A 0.883±0.00 N/A N/A N/A N/A N/A 1.414±0.00
ENST00000583328 N/A N/A 1.341±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583804 N/A N/A N/A N/A 0.785±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584582 0.946±0.00 N/A N/A 1.301±0.00 N/A 1.049±0.00 N/A 1.900±0.00 0.771±0.00 N/A N/A 1.348±0.00 1.564±0.00 2.921±0.78
ENST00000584669 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584887 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585031 N/A N/A N/A N/A N/A N/A 1.427±0.00 N/A N/A N/A 0.615±0.00 N/A N/A N/A
ENSG00000177427 ENST00000323019 N/A 0.583±0.00 N/A 0.467±0.00 N/A N/A 0.779±0.00 1.160±0.00 0.362±0.00 N/A 1.059±0.26 1.640±0.34 1.669±0.13 0.725±0.08
ENST00000395703 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000395704 0.510±0.00 0.712±0.00 0.703±0.00 0.564±0.00 0.688±0.00 0.271±0.08 0.304±0.00 N/A N/A 0.150±0.00 N/A N/A 0.553±0.00 N/A
ENST00000395706 1.690±0.00 0.943±0.00 0.351±0.00 4.467±0.00 1.397±1.11 1.176±0.21 1.632±1.24 3.510±2.97 0.669±0.07 1.445±0.44 2.355±1.56 3.434±2.57 2.915±0.83 1.723±0.56
ENST00000577216 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578174 N/A N/A N/A N/A N/A N/A 1.021±0.00 N/A 1.482±0.00 N/A N/A N/A N/A N/A
ENST00000578621 N/A N/A N/A 2.482±0.00 1.701±0.00 2.282±0.00 N/A N/A N/A N/A 3.574±0.00 N/A N/A N/A
ENST00000579341 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.345±0.97 N/A N/A
ENST00000583745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000228000 ENST00000418183 N/A 0.044±0.00 N/A 0.096±0.00 0.340±0.00 N/A N/A N/A 0.085±0.00 0.286±0.12 N/A 0.365±0.46 0.083±0.00 0.040±0.00
ENSG00000237382 ENST00000439258 N/A 0.056±0.00 N/A N/A 0.235±0.00 N/A 0.058±0.01 N/A N/A N/A N/A N/A N/A N/A
ENSG00000260647 ENST00000566532 0.065±0.00 0.288±0.00 N/A 0.072±0.00 0.110±0.07 0.228±0.00 0.089±0.03 0.244±0.00 0.262±0.18 0.216±0.06 0.291±0.00 0.347±0.00 0.148±0.08 0.244±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000002814 ENSMUST00000002891 2.049±0.26 1.505±0.63 3.138±0.10 2.831±1.67 2.848±0.35 2.924±0.62 0.707±0.30 1.946±0.45 2.566±1.45 2.709±0.26 0.732±0.27 3.369±1.38 4.031±0.97 6.488±1.43
ENSMUST00000102668 0.867±0.39 1.248±0.56 N/A N/A 0.860±0.08 0.719±0.00 0.263±0.01 0.553±0.00 0.442±0.13 N/A N/A 3.179±0.09 0.824±0.39 1.315±0.00
ENSMUST00000117743 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.299±0.00 2.134±0.60 N/A N/A
ENSMUST00000120417 N/A N/A N/A 0.526±0.00 N/A N/A 0.633±0.00 N/A N/A N/A 0.345±0.00 1.359±0.00 2.528±0.59 N/A
ENSMUST00000124799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130068 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000018599 ENSMUST00000018743 6.443±1.78 16.402±1.39 5.365±0.26 3.803±1.93 8.395±3.02 5.140±0.93 10.561±0.85 5.196±0.76 4.367±3.38 7.004±0.86 29.267±3.85 7.305±3.22 3.125±1.18 1.712±0.79
ENSMUST00000146159 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154890 N/A 11.784±0.55 3.587±0.00 3.516±0.51 5.454±0.01 4.085±0.64 6.585±0.00 N/A 2.044±2.04 N/A N/A 5.960±0.97 N/A 1.161±0.00
ENSMUSG00000089581 ENSMUST00000158956 N/A N/A N/A N/A 4342.780±0.00 N/A N/A N/A N/A N/A N/A 32.715±0.00 N/A 33.460±0.00

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