C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005LP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000057939-ENSDARG00000058039 CGP 7955 24:24893699-25071294
GeneTranscriptPositionBiotype
ENSDARG00000057939 (ythdf3)
YTH domain family 3 		ENSDART00000122294 (ythdf3-001) 24893699-24908298 protein_coding
ENSDARG00000058039 (bhlhe22)
basic helix-loop-helix family, member e22 		ENSDART00000080840 (bhlhe22-201) 25069506-25071293 protein_coding
ENSDART00000147658 (bhlhe22-001) 25069289-25071294 protein_coding
CIL_0005LP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000185728-ENSG00000180828 CGP 9606 8:63168553-64583628
GeneTranscriptPositionBiotype
ENSG00000180828 (BHLHE22)
basic helix-loop-helix family, member e22 		ENST00000321870 (BHLHE22-001) 64580367-64583628 protein_coding
ENSG00000185728 (YTHDF3)
YTH domain family, member 3 		ENST00000517371 (YTHDF3-010) 63168654-63212445 protein_coding
ENST00000518373 (YTHDF3-013) 63187530-63189042 processed_transcript
ENST00000519428 (YTHDF3-007) 63168621-63175700 retained_intron
ENST00000522282 (YTHDF3-004) 63168562-63169491 retained_intron
ENST00000539294 (YTHDF3-001) 63168553-63212786 protein_coding
ENST00000612880 (YTHDF3-008) 63168687-63186499 protein_coding
ENST00000613853 (YTHDF3-012) 63169020-63186360 protein_coding
ENST00000615676 (YTHDF3-003) 63168655-63212786 nonsense_mediated_decay
ENST00000617200 (YTHDF3-201) 63168553-63212785 protein_coding
ENST00000617952 (YTHDF3-005) 63168961-63186261 protein_coding
ENST00000619337 (YTHDF3-011) 63169003-63186471 protein_coding
ENST00000621413 (YTHDF3-014) 63168661-63209955 protein_coding
ENST00000621820 (YTHDF3-002) 63169022-63210105 protein_coding
ENST00000621890 (YTHDF3-006) 63169003-63210167 protein_coding
ENST00000621957 (YTHDF3-015) 63168652-63210115 protein_coding
ENST00000623280 (YTHDF3-202) 63168553-63212785 protein_coding
ENSG00000215096 (IFITM8P)
interferon induced transmembrane protein 8 pseudogene 		ENST00000522529 (IFITM8P-001) 63409064-63409457 processed_pseudogene
ENSG00000253205 (CTD-3046C4.1)
 ENST00000517829 (CTD-3046C4.1-002) 63385863-63417355 lincRNA
ENST00000519819 (CTD-3046C4.1-006) 63385609-63461550 lincRNA
ENST00000521061 (CTD-3046C4.1-005) 63432886-63470205 lincRNA
ENST00000521221 (CTD-3046C4.1-001) 63384839-63417930 lincRNA
ENST00000522086 (CTD-3046C4.1-004) 63466225-63470124 lincRNA
ENST00000522265 (CTD-3046C4.1-003) 63413633-63470199 lincRNA
ENSG00000253231 (COX6CP8)
cytochrome c oxidase subunit VIc pseudogene 8 		ENST00000522620 (COX6CP8-001) 64331927-64332152 processed_pseudogene
ENSG00000253554 (RP11-32K4.1)
 ENST00000520365 (RP11-32K4.1-003) 64151106-64240282 antisense
ENST00000521958 (RP11-32K4.1-004) 63856943-64368558 antisense
ENST00000523191 (RP11-32K4.1-001) 63687179-64368558 antisense
ENST00000524360 (RP11-32K4.1-002) 63728774-64240506 antisense
ENSG00000253583 (RP11-573J24.1)
 ENST00000523265 (RP11-573J24.1-001) 63586000-63589408 lincRNA
ENSG00000253734 (LINC01289)
long intergenic non-protein coding RNA 1289 		ENST00000519550 (LINC01289-001) 63769430-63785501 lincRNA
ENSG00000253750 (RP11-21C4.4)
 ENST00000520009 (RP11-21C4.4-001) 64554236-64554475 processed_pseudogene
ENSG00000253762 (RP11-579E24.2)
 ENST00000522857 (RP11-579E24.2-001) 63704756-63751677 lincRNA
ENSG00000253894 (RP11-45K10.2)
 ENST00000517899 (RP11-45K10.2-002) 63470328-63472644 lincRNA
ENST00000518739 (RP11-45K10.2-001) 63465849-63475482 lincRNA
ENST00000522740 (RP11-45K10.2-003) 63470285-63472648 lincRNA
ENSG00000254102 (RP11-21C4.1)
 ENST00000517909 (RP11-21C4.1-001) 64574311-64581888 antisense
ENST00000520834 (RP11-21C4.1-002) 64574306-64577263 antisense
ENSG00000254377 (MIR124-2HG)
MIR124-2 host gene (non-protein coding) 		ENST00000519741 (MIR124-2HG-005) 64377960-64383286 lincRNA
ENST00000520799 (MIR124-2HG-001) 64373328-64378834 lincRNA
ENST00000521441 (MIR124-2HG-004) 64373328-64383787 lincRNA
ENST00000524060 (MIR124-2HG-002) 64377327-64378435 lincRNA
ENST00000524284 (MIR124-2HG-003) 64377333-64378478 lincRNA
ENSG00000261542 (RP11-16E18.3)
 ENST00000569835 (RP11-16E18.3-001) 63215981-63218034 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005LP_0001ENSDARG00000057939ENSDART00000122294ENSDARG00000058039ENSDART00000080840ENSDART00000147658CIL_0005LP_0002ENSG00000180828ENST00000321870ENSG00000185728ENST00000517371ENST00000518373ENST00000519428ENST00000522282ENST00000539294ENST00000612880ENST00000613853ENST00000615676ENST00000617200ENST00000617952ENST00000619337ENST00000621413ENST00000621820ENST00000621890ENST00000621957ENST00000623280ENSG00000215096ENST00000522529ENSG00000253205ENST00000517829ENST00000519819ENST00000521061ENST00000521221ENST00000522086ENST00000522265ENSG00000253231ENST00000522620ENSG00000253554ENST00000520365ENST00000521958ENST00000523191ENST00000524360ENSG00000253583ENST00000523265ENSG00000253734ENST00000519550ENSG00000253750ENST00000520009ENSG00000253762ENST00000522857ENSG00000253894ENST00000517899ENST00000518739ENST00000522740ENSG00000254102ENST00000517909ENST00000520834ENSG00000254377ENST00000519741ENST00000520799ENST00000521441ENST00000524060ENST00000524284ENSG00000261542ENST00000569835
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005LP_0001ENSDARG00000057939ENSDART00000122294ENSDARG00000058039ENSDART00000080840CIL_0005LP_0002ENSG00000180828ENST00000321870ENSG00000185728ENST00000517371ENST00000539294ENST00000615676ENST00000617200ENST00000621413ENST00000621820ENST00000621890ENST00000621957ENSG00000215096ENST00000522529ENSG00000253205ENST00000517829ENST00000521061ENST00000521221ENST00000522086ENSG00000253231ENST00000522620ENSG00000253554ENST00000520365ENST00000521958ENST00000523191ENST00000524360ENSG00000253583ENST00000523265ENSG00000253734ENST00000519550ENSG00000253750ENST00000520009ENSG00000253762ENST00000522857ENSG00000253894ENST00000517899ENST00000518739ENST00000522740ENSG00000254102ENST00000517909ENST00000520834ENSG00000254377ENST00000519741ENSG00000261542ENST00000569835
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000057939 ENSDART00000122294 N/A N/A N/A 2.308±0.77 N/A N/A 3.477±0.96 2.278±1.50 1.429±0.00 N/A 4.934±0.00 N/A N/A N/A
ENSDARG00000058039 ENSDART00000080840 N/A N/A N/A 21.666±10.78 N/A N/A N/A N/A 0.025±0.00 N/A 1.301±0.00 N/A N/A N/A
ENSDART00000147658 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000180828 ENST00000321870 0.073±0.00 0.723±0.00 N/A 6.102±0.00 0.433±0.23 1.200±0.00 0.064±0.00 N/A 0.197±0.00 0.494±0.40 N/A 0.226±0.09 0.062±0.02 0.161±0.06
ENSG00000185728 ENST00000517371 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.991±0.00 N/A N/A
ENST00000518373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519428 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522282 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539294 6.680±0.00 4.191±0.00 1.835±0.00 4.360±1.19 4.451±1.39 4.147±0.24 4.800±2.75 2.763±1.60 4.065±3.22 3.043±1.22 2.320±0.56 5.793±5.01 4.121±2.60 5.000±1.63
ENST00000612880 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613853 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615676 N/A N/A N/A 1.689±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.387±0.00
ENST00000617200 2.691±0.00 N/A N/A N/A 5.615±0.00 1.312±0.00 N/A 7.239±0.00 1.926±0.00 3.403±0.00 N/A 2.420±2.04 2.791±0.67 N/A
ENST00000617952 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619337 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621413 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.915±0.00 N/A N/A N/A 2.664±0.00
ENST00000621820 N/A N/A N/A 2.198±0.00 N/A N/A 1.228±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000621890 N/A N/A N/A N/A 7.127±0.00 4.857±0.00 N/A N/A N/A N/A 2.733±0.00 3.075±1.51 N/A N/A
ENST00000621957 N/A N/A N/A N/A N/A N/A 3.407±1.75 3.579±0.00 N/A N/A N/A N/A 2.464±0.00 2.869±0.00
ENST00000623280 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000215096 ENST00000522529 0.265±0.00 0.279±0.00 N/A N/A N/A 0.054±0.00 0.050±0.00 0.342±0.00 0.097±0.00 0.261±0.00 N/A 0.224±0.00 N/A 0.401±0.30
ENSG00000253205 ENST00000517829 N/A N/A N/A 0.025±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.090±0.00
ENST00000519819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521061 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.208±0.00
ENST00000521221 N/A N/A N/A 0.114±0.00 N/A N/A N/A N/A N/A 0.067±0.00 N/A N/A N/A 0.881±0.00
ENST00000522086 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.141±0.00
ENST00000522265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000253231 ENST00000522620 N/A N/A N/A N/A N/A N/A N/A 0.054±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000253554 ENST00000520365 0.026±0.00 N/A N/A 0.174±0.00 0.327±0.09 N/A 0.148±0.00 0.481±0.00 0.356±0.29 N/A N/A 0.151±0.13 N/A 0.219±0.00
ENST00000521958 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.058±0.01
ENST00000523191 N/A N/A N/A 0.414±0.08 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524360 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.043±0.00
ENSG00000253583 ENST00000523265 N/A 0.077±0.00 N/A 0.039±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.084±0.00
ENSG00000253734 ENST00000519550 0.006±0.00 0.098±0.00 N/A 0.099±0.05 0.008±0.00 0.024±0.01 0.013±0.00 0.034±0.00 0.011±0.00 0.014±0.00 N/A 0.014±0.00 N/A 0.833±0.49
ENSG00000253750 ENST00000520009 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.058±0.00 N/A N/A N/A N/A
ENSG00000253762 ENST00000522857 N/A N/A N/A 0.108±0.02 N/A 0.609±0.00 0.045±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000253894 ENST00000517899 N/A N/A N/A 0.030±0.00 N/A N/A N/A N/A N/A 0.044±0.00 N/A N/A N/A 0.266±0.00
ENST00000518739 N/A N/A N/A 0.048±0.03 N/A N/A N/A N/A N/A N/A N/A 0.007±0.00 N/A 0.105±0.09
ENST00000522740 N/A N/A N/A 0.029±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.196±0.00
ENSG00000254102 ENST00000517909 0.102±0.00 N/A N/A N/A N/A N/A N/A N/A 0.039±0.01 N/A 0.004±0.00 N/A N/A 0.055±0.00
ENST00000520834 N/A N/A N/A N/A 0.024±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000254377 ENST00000519741 N/A N/A N/A 1.235±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521441 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524060 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524284 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000261542 ENST00000569835 N/A 0.180±0.00 0.081±0.00 0.430±0.23 0.268±0.07 0.123±0.01 0.102±0.02 0.411±0.17 0.100±0.03 0.057±0.00 0.091±0.00 0.158±0.06 0.121±0.08 0.303±0.00

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