Institute of Cardiovascular Regeneration Webtool Repository

CIL_0005OF_0001 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSG00000212724-ENSG00000213417	CGP	9606	17:41059240-41065879
Gene	Transcript	Position	Biotype
ENSG00000212724 (KRTAP2-3) keratin associated protein 2-3	ENST00000391418 (KRTAP2-3-001)	41059240-41060114	protein_coding

CIL_0005OF_0002 (Click to Hide/Show)

Notice (8): Undefined index: CIL_0005OF_0002 [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0005OF_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005OF_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005OF_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005OF_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005OF_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000212724' => 'keratin associated protein 2-3',
		'ENSG00000213417' => 'keratin associated protein 2-4',
		'ENSG00000212725' => 'keratin associated protein 2-1',
		'ENSG00000214518' => 'keratin associated protein 2-2',
		'ENSMUSG00000057674' => 'predicted gene 11938',
		'ENSMUSG00000058725' => 'predicted gene 11937',
		'ENSMUSG00000060756' => 'keratin associated protein 2-4',
		'ENSMUSG00000062278' => 'predicted gene 11562'
	),
	'gene_name_arr' => array(
		'ENSG00000212724' => 'KRTAP2-3',
		'ENSG00000213417' => 'KRTAP2-4',
		'ENSG00000212725' => 'KRTAP2-1',
		'ENSG00000214518' => 'KRTAP2-2',
		'ENSMUSG00000057674' => 'Gm11938',
		'ENSMUSG00000058725' => 'Gm11937',
		'ENSMUSG00000060756' => 'Krtap2-4',
		'ENSMUSG00000062278' => 'Gm11562'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 3 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 4 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 5 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 1 => 'Bladder',
		(int) 7 => 'Brain',
		(int) 11 => 'Colon',
		(int) 15 => 'Muscle',
		(int) 21 => 'Ovary',
		(int) 25 => 'Placenta',
		(int) 28 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 15,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000391418' => array(
			'start' => '41059240',
			'end' => '41060114',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP2-3-001'
		),
		'ENST00000394015' => array(
			'start' => '41065116',
			'end' => '41065879',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP2-4-001'
		),
		'ENST00000391419' => array(
			'start' => '41046541',
			'end' => '41047316',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP2-1-001'
		),
		'ENST00000542137' => array(
			'start' => '41046791',
			'end' => '41047267',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP2-1-201'
		),
		'ENST00000398477' => array(
			'start' => '41054498',
			'end' => '41055230',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP2-2-001'
		),
		'ENST00000542910' => array(
			'start' => '41054750',
			'end' => '41055211',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP2-2-201'
		),
		'ENSMUST00000072306' => array(
			'start' => '99602646',
			'end' => '99603308',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Gm11938-001'
		),
		'ENSMUST00000076478' => array(
			'start' => '99609794',
			'end' => '99610189',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Gm11937-001'
		),
		'ENSMUST00000074926' => array(
			'start' => '99614019',
			'end' => '99614846',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Krtap2-4-001'
		),
		'ENSMUST00000073853' => array(
			'start' => '99619619',
			'end' => '99620435',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Gm11562-001'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0005OF_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005OF_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005OF_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005OF_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005OF_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0005OF_0001' => array(
		'genes_in_region' => array(
			'ENSG00000212724' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Placenta'
		)
	),
	'CIL_0005OF_0003' => array(
		'genes_in_region' => array(
			'ENSG00000212724' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Placenta'
		)
	),
	'CIL_0005OF_0004' => array(
		'genes_in_region' => array(
			'ENSMUSG00000057674' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000058725' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Bladder',
			(int) 2 => 'Colon',
			(int) 3 => 'Muscle',
			(int) 4 => 'Ovary',
			(int) 5 => 'Testis',
			(int) 6 => 'Bladder',
			(int) 7 => 'Brain',
			(int) 8 => 'Muscle',
			(int) 9 => 'Testis'
		)
	),
	'CIL_0005OF_0005' => array(
		'genes_in_region' => array(
			'ENSMUSG00000058725' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000060756' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Brain',
			(int) 2 => 'Muscle',
			(int) 3 => 'Testis',
			(int) 4 => 'Bladder',
			(int) 5 => 'Brain',
			(int) 6 => 'Colon',
			(int) 7 => 'Muscle',
			(int) 8 => 'Testis'
		)
	),
	'CIL_0005OF_0006' => array(
		'genes_in_region' => array(
			'ENSMUSG00000060756' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000062278' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Brain',
			(int) 2 => 'Colon',
			(int) 3 => 'Muscle',
			(int) 4 => 'Testis',
			(int) 5 => 'Bladder',
			(int) 6 => 'Colon',
			(int) 7 => 'Muscle',
			(int) 8 => 'Ovary',
			(int) 9 => 'Placenta',
			(int) 10 => 'Testis'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000212724' => 'keratin associated protein 2-3',
	'ENSG00000213417' => 'keratin associated protein 2-4',
	'ENSG00000212725' => 'keratin associated protein 2-1',
	'ENSG00000214518' => 'keratin associated protein 2-2',
	'ENSMUSG00000057674' => 'predicted gene 11938',
	'ENSMUSG00000058725' => 'predicted gene 11937',
	'ENSMUSG00000060756' => 'keratin associated protein 2-4',
	'ENSMUSG00000062278' => 'predicted gene 11562'
)
$gene_name_arr = array(
	'ENSG00000212724' => 'KRTAP2-3',
	'ENSG00000213417' => 'KRTAP2-4',
	'ENSG00000212725' => 'KRTAP2-1',
	'ENSG00000214518' => 'KRTAP2-2',
	'ENSMUSG00000057674' => 'Gm11938',
	'ENSMUSG00000058725' => 'Gm11937',
	'ENSMUSG00000060756' => 'Krtap2-4',
	'ENSMUSG00000062278' => 'Gm11562'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005OF_0001',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41059240',
			'seq_end' => '41065879',
			'region_length' => '6639',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000212724-ENSG00000213417'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005OF_0002',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41046541',
			'seq_end' => '41055230',
			'region_length' => '8689',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000212725-ENSG00000214518'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005OF_0003',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41054498',
			'seq_end' => '41060114',
			'region_length' => '5616',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000214518-ENSG00000212724'
		)
	),
	(int) 3 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005OF_0004',
			'tax_id' => '10090',
			'chromosome' => '11',
			'seq_start' => '99602646',
			'seq_end' => '99610189',
			'region_length' => '7543',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000057674-ENSMUSG00000058725'
		)
	),
	(int) 4 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005OF_0005',
			'tax_id' => '10090',
			'chromosome' => '11',
			'seq_start' => '99609794',
			'seq_end' => '99614846',
			'region_length' => '5052',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000058725-ENSMUSG00000060756'
		)
	),
	(int) 5 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005OF_0006',
			'tax_id' => '10090',
			'chromosome' => '11',
			'seq_start' => '99614019',
			'seq_end' => '99620435',
			'region_length' => '6416',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000060756-ENSMUSG00000062278'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 1 => 'Bladder',
	(int) 7 => 'Brain',
	(int) 11 => 'Colon',
	(int) 15 => 'Muscle',
	(int) 21 => 'Ovary',
	(int) 25 => 'Placenta',
	(int) 28 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 15
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000391418' => array(
		'start' => '41059240',
		'end' => '41060114',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP2-3-001'
	),
	'ENST00000394015' => array(
		'start' => '41065116',
		'end' => '41065879',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP2-4-001'
	),
	'ENST00000391419' => array(
		'start' => '41046541',
		'end' => '41047316',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP2-1-001'
	),
	'ENST00000542137' => array(
		'start' => '41046791',
		'end' => '41047267',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP2-1-201'
	),
	'ENST00000398477' => array(
		'start' => '41054498',
		'end' => '41055230',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP2-2-001'
	),
	'ENST00000542910' => array(
		'start' => '41054750',
		'end' => '41055211',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP2-2-201'
	),
	'ENSMUST00000072306' => array(
		'start' => '99602646',
		'end' => '99603308',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Gm11938-001'
	),
	'ENSMUST00000076478' => array(
		'start' => '99609794',
		'end' => '99610189',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Gm11937-001'
	),
	'ENSMUST00000074926' => array(
		'start' => '99614019',
		'end' => '99614846',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Krtap2-4-001'
	),
	'ENSMUST00000073853' => array(
		'start' => '99619619',
		'end' => '99620435',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Gm11562-001'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0005OF_0001' => array(
		'genes_in_region' => array(
			'ENSG00000212724' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Placenta'
		)
	),
	'CIL_0005OF_0003' => array(
		'genes_in_region' => array(
			'ENSG00000212724' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Placenta'
		)
	),
	'CIL_0005OF_0004' => array(
		'genes_in_region' => array(
			'ENSMUSG00000057674' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000058725' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Bladder',
			(int) 2 => 'Colon',
			(int) 3 => 'Muscle',
			(int) 4 => 'Ovary',
			(int) 5 => 'Testis',
			(int) 6 => 'Bladder',
			(int) 7 => 'Brain',
			(int) 8 => 'Muscle',
			(int) 9 => 'Testis'
		)
	),
	'CIL_0005OF_0005' => array(
		'genes_in_region' => array(
			'ENSMUSG00000058725' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000060756' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Brain',
			(int) 2 => 'Muscle',
			(int) 3 => 'Testis',
			(int) 4 => 'Bladder',
			(int) 5 => 'Brain',
			(int) 6 => 'Colon',
			(int) 7 => 'Muscle',
			(int) 8 => 'Testis'
		)
	),
	'CIL_0005OF_0006' => array(
		'genes_in_region' => array(
			'ENSMUSG00000060756' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000062278' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Brain',
			(int) 2 => 'Colon',
			(int) 3 => 'Muscle',
			(int) 4 => 'Testis',
			(int) 5 => 'Bladder',
			(int) 6 => 'Colon',
			(int) 7 => 'Muscle',
			(int) 8 => 'Ovary',
			(int) 9 => 'Placenta',
			(int) 10 => 'Testis'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0005OF_0002',
		'tax_id' => '9606',
		'chromosome' => '17',
		'seq_start' => '41046541',
		'seq_end' => '41055230',
		'region_length' => '8689',
		'region_type' => 'CGP',
		'el_id' => 'ENSG00000212725-ENSG00000214518'
	)
)
$gene_el = array(
	'ENST00000391418' => array(
		'Ovary' => array(
			'average_FPKM' => '0.103',
			'stddev_FPKM' => '0.00'
		),
		'Placenta' => array(
			'average_FPKM' => '0.245',
			'stddev_FPKM' => '0.05'
		)
	)
)
$gene_key = 'ENSG00000212724'
$is_first = false
$tran_el = array(
	'Ovary' => array(
		'average_FPKM' => '0.103',
		'stddev_FPKM' => '0.00'
	),
	'Placenta' => array(
		'average_FPKM' => '0.245',
		'stddev_FPKM' => '0.05'
	)
)
$tran_key = 'ENST00000391418'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0005OF_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005OF_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005OF_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005OF_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005OF_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000212724' => 'keratin associated protein 2-3',
		'ENSG00000213417' => 'keratin associated protein 2-4',
		'ENSG00000212725' => 'keratin associated protein 2-1',
		'ENSG00000214518' => 'keratin associated protein 2-2',
		'ENSMUSG00000057674' => 'predicted gene 11938',
		'ENSMUSG00000058725' => 'predicted gene 11937',
		'ENSMUSG00000060756' => 'keratin associated protein 2-4',
		'ENSMUSG00000062278' => 'predicted gene 11562'
	),
	'gene_name_arr' => array(
		'ENSG00000212724' => 'KRTAP2-3',
		'ENSG00000213417' => 'KRTAP2-4',
		'ENSG00000212725' => 'KRTAP2-1',
		'ENSG00000214518' => 'KRTAP2-2',
		'ENSMUSG00000057674' => 'Gm11938',
		'ENSMUSG00000058725' => 'Gm11937',
		'ENSMUSG00000060756' => 'Krtap2-4',
		'ENSMUSG00000062278' => 'Gm11562'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 3 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 4 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 5 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 1 => 'Bladder',
		(int) 7 => 'Brain',
		(int) 11 => 'Colon',
		(int) 15 => 'Muscle',
		(int) 21 => 'Ovary',
		(int) 25 => 'Placenta',
		(int) 28 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 15,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000391418' => array(
			'start' => '41059240',
			'end' => '41060114',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP2-3-001'
		),
		'ENST00000394015' => array(
			'start' => '41065116',
			'end' => '41065879',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP2-4-001'
		),
		'ENST00000391419' => array(
			'start' => '41046541',
			'end' => '41047316',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP2-1-001'
		),
		'ENST00000542137' => array(
			'start' => '41046791',
			'end' => '41047267',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP2-1-201'
		),
		'ENST00000398477' => array(
			'start' => '41054498',
			'end' => '41055230',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP2-2-001'
		),
		'ENST00000542910' => array(
			'start' => '41054750',
			'end' => '41055211',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP2-2-201'
		),
		'ENSMUST00000072306' => array(
			'start' => '99602646',
			'end' => '99603308',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Gm11938-001'
		),
		'ENSMUST00000076478' => array(
			'start' => '99609794',
			'end' => '99610189',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Gm11937-001'
		),
		'ENSMUST00000074926' => array(
			'start' => '99614019',
			'end' => '99614846',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Krtap2-4-001'
		),
		'ENSMUST00000073853' => array(
			'start' => '99619619',
			'end' => '99620435',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Gm11562-001'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0005OF_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005OF_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005OF_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005OF_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005OF_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0005OF_0001' => array(
		'genes_in_region' => array(
			'ENSG00000212724' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Placenta'
		)
	),
	'CIL_0005OF_0003' => array(
		'genes_in_region' => array(
			'ENSG00000212724' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Placenta'
		)
	),
	'CIL_0005OF_0004' => array(
		'genes_in_region' => array(
			'ENSMUSG00000057674' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000058725' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Bladder',
			(int) 2 => 'Colon',
			(int) 3 => 'Muscle',
			(int) 4 => 'Ovary',
			(int) 5 => 'Testis',
			(int) 6 => 'Bladder',
			(int) 7 => 'Brain',
			(int) 8 => 'Muscle',
			(int) 9 => 'Testis'
		)
	),
	'CIL_0005OF_0005' => array(
		'genes_in_region' => array(
			'ENSMUSG00000058725' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000060756' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Brain',
			(int) 2 => 'Muscle',
			(int) 3 => 'Testis',
			(int) 4 => 'Bladder',
			(int) 5 => 'Brain',
			(int) 6 => 'Colon',
			(int) 7 => 'Muscle',
			(int) 8 => 'Testis'
		)
	),
	'CIL_0005OF_0006' => array(
		'genes_in_region' => array(
			'ENSMUSG00000060756' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000062278' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Brain',
			(int) 2 => 'Colon',
			(int) 3 => 'Muscle',
			(int) 4 => 'Testis',
			(int) 5 => 'Bladder',
			(int) 6 => 'Colon',
			(int) 7 => 'Muscle',
			(int) 8 => 'Ovary',
			(int) 9 => 'Placenta',
			(int) 10 => 'Testis'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000212724' => 'keratin associated protein 2-3',
	'ENSG00000213417' => 'keratin associated protein 2-4',
	'ENSG00000212725' => 'keratin associated protein 2-1',
	'ENSG00000214518' => 'keratin associated protein 2-2',
	'ENSMUSG00000057674' => 'predicted gene 11938',
	'ENSMUSG00000058725' => 'predicted gene 11937',
	'ENSMUSG00000060756' => 'keratin associated protein 2-4',
	'ENSMUSG00000062278' => 'predicted gene 11562'
)
$gene_name_arr = array(
	'ENSG00000212724' => 'KRTAP2-3',
	'ENSG00000213417' => 'KRTAP2-4',
	'ENSG00000212725' => 'KRTAP2-1',
	'ENSG00000214518' => 'KRTAP2-2',
	'ENSMUSG00000057674' => 'Gm11938',
	'ENSMUSG00000058725' => 'Gm11937',
	'ENSMUSG00000060756' => 'Krtap2-4',
	'ENSMUSG00000062278' => 'Gm11562'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005OF_0001',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41059240',
			'seq_end' => '41065879',
			'region_length' => '6639',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000212724-ENSG00000213417'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005OF_0002',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41046541',
			'seq_end' => '41055230',
			'region_length' => '8689',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000212725-ENSG00000214518'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005OF_0003',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41054498',
			'seq_end' => '41060114',
			'region_length' => '5616',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000214518-ENSG00000212724'
		)
	),
	(int) 3 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005OF_0004',
			'tax_id' => '10090',
			'chromosome' => '11',
			'seq_start' => '99602646',
			'seq_end' => '99610189',
			'region_length' => '7543',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000057674-ENSMUSG00000058725'
		)
	),
	(int) 4 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005OF_0005',
			'tax_id' => '10090',
			'chromosome' => '11',
			'seq_start' => '99609794',
			'seq_end' => '99614846',
			'region_length' => '5052',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000058725-ENSMUSG00000060756'
		)
	),
	(int) 5 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005OF_0006',
			'tax_id' => '10090',
			'chromosome' => '11',
			'seq_start' => '99614019',
			'seq_end' => '99620435',
			'region_length' => '6416',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000060756-ENSMUSG00000062278'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 1 => 'Bladder',
	(int) 7 => 'Brain',
	(int) 11 => 'Colon',
	(int) 15 => 'Muscle',
	(int) 21 => 'Ovary',
	(int) 25 => 'Placenta',
	(int) 28 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 15
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000391418' => array(
		'start' => '41059240',
		'end' => '41060114',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP2-3-001'
	),
	'ENST00000394015' => array(
		'start' => '41065116',
		'end' => '41065879',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP2-4-001'
	),
	'ENST00000391419' => array(
		'start' => '41046541',
		'end' => '41047316',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP2-1-001'
	),
	'ENST00000542137' => array(
		'start' => '41046791',
		'end' => '41047267',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP2-1-201'
	),
	'ENST00000398477' => array(
		'start' => '41054498',
		'end' => '41055230',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP2-2-001'
	),
	'ENST00000542910' => array(
		'start' => '41054750',
		'end' => '41055211',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP2-2-201'
	),
	'ENSMUST00000072306' => array(
		'start' => '99602646',
		'end' => '99603308',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Gm11938-001'
	),
	'ENSMUST00000076478' => array(
		'start' => '99609794',
		'end' => '99610189',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Gm11937-001'
	),
	'ENSMUST00000074926' => array(
		'start' => '99614019',
		'end' => '99614846',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Krtap2-4-001'
	),
	'ENSMUST00000073853' => array(
		'start' => '99619619',
		'end' => '99620435',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Gm11562-001'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0005OF_0001' => array(
		'genes_in_region' => array(
			'ENSG00000212724' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Placenta'
		)
	),
	'CIL_0005OF_0003' => array(
		'genes_in_region' => array(
			'ENSG00000212724' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Placenta'
		)
	),
	'CIL_0005OF_0004' => array(
		'genes_in_region' => array(
			'ENSMUSG00000057674' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000058725' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Bladder',
			(int) 2 => 'Colon',
			(int) 3 => 'Muscle',
			(int) 4 => 'Ovary',
			(int) 5 => 'Testis',
			(int) 6 => 'Bladder',
			(int) 7 => 'Brain',
			(int) 8 => 'Muscle',
			(int) 9 => 'Testis'
		)
	),
	'CIL_0005OF_0005' => array(
		'genes_in_region' => array(
			'ENSMUSG00000058725' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000060756' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Brain',
			(int) 2 => 'Muscle',
			(int) 3 => 'Testis',
			(int) 4 => 'Bladder',
			(int) 5 => 'Brain',
			(int) 6 => 'Colon',
			(int) 7 => 'Muscle',
			(int) 8 => 'Testis'
		)
	),
	'CIL_0005OF_0006' => array(
		'genes_in_region' => array(
			'ENSMUSG00000060756' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000062278' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Brain',
			(int) 2 => 'Colon',
			(int) 3 => 'Muscle',
			(int) 4 => 'Testis',
			(int) 5 => 'Bladder',
			(int) 6 => 'Colon',
			(int) 7 => 'Muscle',
			(int) 8 => 'Ovary',
			(int) 9 => 'Placenta',
			(int) 10 => 'Testis'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0005OF_0002',
		'tax_id' => '9606',
		'chromosome' => '17',
		'seq_start' => '41046541',
		'seq_end' => '41055230',
		'region_length' => '8689',
		'region_type' => 'CGP',
		'el_id' => 'ENSG00000212725-ENSG00000214518'
	)
)
$gene_el = array(
	'ENST00000391418' => array(
		'Ovary' => array(
			'average_FPKM' => '0.103',
			'stddev_FPKM' => '0.00'
		),
		'Placenta' => array(
			'average_FPKM' => '0.245',
			'stddev_FPKM' => '0.05'
		)
	)
)
$gene_key = 'ENSG00000212724'
$is_first = false
$tran_el = array(
	'Ovary' => array(
		'average_FPKM' => '0.103',
		'stddev_FPKM' => '0.00'
	),
	'Placenta' => array(
		'average_FPKM' => '0.245',
		'stddev_FPKM' => '0.05'
	)
)
$tran_key = 'ENST00000391418'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Source ID		Type	Tax ID	Position
ENSG00000212725-ENSG00000214518		CGP	9606	17:41046541-41055230
Gene		Transcript	Position	Biotype

CIL_0005OF_0003 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSG00000214518-ENSG00000212724	CGP	9606	17:41054498-41060114
Gene	Transcript	Position	Biotype
ENSG00000212724 (KRTAP2-3) keratin associated protein 2-3	ENST00000391418 (KRTAP2-3-001)	41059240-41060114	protein_coding

CIL_0005OF_0004 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSMUSG00000057674-ENSMUSG00000058725	CGP	10090	11:99602646-99610189
Gene	Transcript	Position	Biotype
ENSMUSG00000057674 (Gm11938) predicted gene 11938	ENSMUST00000072306 (Gm11938-001)	99602646-99603308	protein_coding
ENSMUSG00000058725 (Gm11937) predicted gene 11937	ENSMUST00000076478 (Gm11937-001)	99609794-99610189	protein_coding

CIL_0005OF_0005 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSMUSG00000058725-ENSMUSG00000060756	CGP	10090	11:99609794-99614846
Gene	Transcript	Position	Biotype
ENSMUSG00000058725 (Gm11937) predicted gene 11937	ENSMUST00000076478 (Gm11937-001)	99609794-99610189	protein_coding
ENSMUSG00000060756 (Krtap2-4) keratin associated protein 2-4	ENSMUST00000074926 (Krtap2-4-001)	99614019-99614846	protein_coding

CIL_0005OF_0006 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSMUSG00000060756-ENSMUSG00000062278	CGP	10090	11:99614019-99620435
Gene	Transcript	Position	Biotype
ENSMUSG00000060756 (Krtap2-4) keratin associated protein 2-4	ENSMUST00000074926 (Krtap2-4-001)	99614019-99614846	protein_coding
ENSMUSG00000062278 (Gm11562) predicted gene 11562	ENSMUST00000073853 (Gm11562-001)	99619619-99620435	protein_coding

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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