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CIL_0005PE_0001 (Click to Hide/Show)

Notice (8): Undefined index: CIL_0005PE_0001 [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0005PE_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0007' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0008' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0009' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_000A' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_000B' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000198090' => 'keratin associated protein 4-6',
		'ENSG00000198271' => 'keratin associated protein 4-5',
		'ENSG00000204880' => 'keratin associated protein 4-8',
		'ENSG00000241241' => 'keratin associated protein 4-16, pseudogene',
		'ENSG00000212721' => 'keratin associated protein 4-11',
		'ENSG00000213416' => 'keratin associated protein 4-12',
		'ENSG00000212722' => 'keratin associated protein 4-9',
		'ENSG00000240871' => 'keratin associated protein 4-7',
		'ENSMUSG00000044649' => 'keratin associated protein 4-2',
		'ENSMUSG00000045109' => 'keratin associated protein 4-7',
		'ENSMUSG00000078130' => 'predicted gene 11555',
		'ENSMUSG00000063251' => 'keratin associated protein 4-1',
		'ENSMUSG00000069718' => 'predicted gene 11563'
	),
	'gene_name_arr' => array(
		'ENSG00000198090' => 'KRTAP4-6',
		'ENSG00000198271' => 'KRTAP4-5',
		'ENSG00000204880' => 'KRTAP4-8',
		'ENSG00000241241' => 'KRTAP4-16P',
		'ENSG00000212721' => 'KRTAP4-11',
		'ENSG00000213416' => 'KRTAP4-12',
		'ENSG00000212722' => 'KRTAP4-9',
		'ENSG00000240871' => 'KRTAP4-7',
		'ENSMUSG00000044649' => 'Krtap4-2',
		'ENSMUSG00000045109' => 'Krtap4-7',
		'ENSMUSG00000078130' => 'Gm11555',
		'ENSMUSG00000063251' => 'Krtap4-1',
		'ENSMUSG00000069718' => 'Gm11563'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 3 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 4 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 5 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 6 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 7 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 8 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 9 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 10 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Bladder',
		(int) 3 => 'Brain',
		(int) 6 => 'Heart',
		(int) 8 => 'Lung',
		(int) 13 => 'Muscle',
		(int) 21 => 'Ovary',
		(int) 25 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 39,
	'longest_tissue_len' => (int) 7,
	'transcript_data' => array(
		'ENST00000345847' => array(
			'start' => '41139433',
			'end' => '41140487',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-6-001'
		),
		'ENST00000343246' => array(
			'start' => '41148924',
			'end' => '41149802',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-5-001'
		),
		'ENST00000318329' => array(
			'start' => '41097527',
			'end' => '41098084',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-8-201'
		),
		'ENST00000333822' => array(
			'start' => '41096981',
			'end' => '41098141',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-8-001'
		),
		'ENST00000440582' => array(
			'start' => '41101502',
			'end' => '41102209',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-16P-001'
		),
		'ENST00000391413' => array(
			'start' => '41117181',
			'end' => '41118360',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-11-001'
		),
		'ENST00000394014' => array(
			'start' => '41123091',
			'end' => '41124167',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-12-001'
		),
		'ENST00000391415' => array(
			'start' => '41105332',
			'end' => '41106488',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-9-001'
		),
		'ENST00000617453' => array(
			'start' => '41105389',
			'end' => '41106021',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-9-201'
		),
		'ENST00000391417' => array(
			'start' => '41084150',
			'end' => '41085141',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-7-001'
		),
		'ENST00000612231' => array(
			'start' => '41084181',
			'end' => '41106067',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-7-201'
		),
		'ENST00000621138' => array(
			'start' => '41084207',
			'end' => '41084674',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-7-202'
		),
		'ENSMUST00000058987' => array(
			'start' => '99634111',
			'end' => '99635084',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Krtap4-2-001'
		),
		'ENSMUST00000055121' => array(
			'start' => '99643106',
			'end' => '99644089',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Krtap4-7-001'
		),
		'ENSMUST00000073126' => array(
			'start' => '99649660',
			'end' => '99650181',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Gm11555-201'
		),
		'ENSMUST00000104929' => array(
			'start' => '99649599',
			'end' => '99650236',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Gm11555-001'
		),
		'ENSMUST00000081007' => array(
			'start' => '99627224',
			'end' => '99628238',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Krtap4-1-001'
		),
		'ENSMUST00000092695' => array(
			'start' => '99657949',
			'end' => '99658960',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Gm11563-001'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0005PE_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0007' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0008' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0009' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_000A' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_000B' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0005PE_0003' => array(
		'genes_in_region' => array(
			'ENSG00000212721' => array(
				[maximum depth reached]
			),
			'ENSG00000213416' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Heart'
		)
	),
	'CIL_0005PE_0004' => array(
		'genes_in_region' => array(
			'ENSG00000212721' => array(
				[maximum depth reached]
			),
			'ENSG00000240871' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Lung',
			(int) 2 => 'Brain'
		)
	),
	'CIL_0005PE_0005' => array(
		'genes_in_region' => array(
			'ENSG00000213416' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Heart'
		)
	),
	'CIL_0005PE_0006' => array(
		'genes_in_region' => array(
			'ENSG00000240871' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0005PE_0007' => array(
		'genes_in_region' => array(
			'ENSG00000240871' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0005PE_0008' => array(
		'genes_in_region' => array(
			'ENSMUSG00000044649' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000045109' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Lung',
			(int) 2 => 'Muscle',
			(int) 3 => 'Ovary',
			(int) 4 => 'Muscle'
		)
	),
	'CIL_0005PE_0009' => array(
		'genes_in_region' => array(
			'ENSMUSG00000045109' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000078130' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Muscle',
			(int) 1 => 'Muscle'
		)
	),
	'CIL_0005PE_000A' => array(
		'genes_in_region' => array(
			'ENSMUSG00000044649' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000063251' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Lung',
			(int) 2 => 'Muscle',
			(int) 3 => 'Ovary',
			(int) 4 => 'Bladder',
			(int) 5 => 'Muscle',
			(int) 6 => 'Testis'
		)
	),
	'CIL_0005PE_000B' => array(
		'genes_in_region' => array(
			'ENSMUSG00000069718' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000078130' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Muscle',
			(int) 1 => 'Muscle'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000198090' => 'keratin associated protein 4-6',
	'ENSG00000198271' => 'keratin associated protein 4-5',
	'ENSG00000204880' => 'keratin associated protein 4-8',
	'ENSG00000241241' => 'keratin associated protein 4-16, pseudogene',
	'ENSG00000212721' => 'keratin associated protein 4-11',
	'ENSG00000213416' => 'keratin associated protein 4-12',
	'ENSG00000212722' => 'keratin associated protein 4-9',
	'ENSG00000240871' => 'keratin associated protein 4-7',
	'ENSMUSG00000044649' => 'keratin associated protein 4-2',
	'ENSMUSG00000045109' => 'keratin associated protein 4-7',
	'ENSMUSG00000078130' => 'predicted gene 11555',
	'ENSMUSG00000063251' => 'keratin associated protein 4-1',
	'ENSMUSG00000069718' => 'predicted gene 11563'
)
$gene_name_arr = array(
	'ENSG00000198090' => 'KRTAP4-6',
	'ENSG00000198271' => 'KRTAP4-5',
	'ENSG00000204880' => 'KRTAP4-8',
	'ENSG00000241241' => 'KRTAP4-16P',
	'ENSG00000212721' => 'KRTAP4-11',
	'ENSG00000213416' => 'KRTAP4-12',
	'ENSG00000212722' => 'KRTAP4-9',
	'ENSG00000240871' => 'KRTAP4-7',
	'ENSMUSG00000044649' => 'Krtap4-2',
	'ENSMUSG00000045109' => 'Krtap4-7',
	'ENSMUSG00000078130' => 'Gm11555',
	'ENSMUSG00000063251' => 'Krtap4-1',
	'ENSMUSG00000069718' => 'Gm11563'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0001',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41139433',
			'seq_end' => '41149802',
			'region_length' => '10369',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000198090-ENSG00000198271'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0002',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41096981',
			'seq_end' => '41102209',
			'region_length' => '5228',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000204880-ENSG00000241241'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0003',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41117181',
			'seq_end' => '41124167',
			'region_length' => '6986',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000212721-ENSG00000213416'
		)
	),
	(int) 3 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0004',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41105332',
			'seq_end' => '41118360',
			'region_length' => '13028',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000212722-ENSG00000212721'
		)
	),
	(int) 4 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0005',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41123091',
			'seq_end' => '41140487',
			'region_length' => '17396',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000213416-ENSG00000198090'
		)
	),
	(int) 5 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0006',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41084150',
			'seq_end' => '41106067',
			'region_length' => '21917',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000240871-ENSG00000240871'
		)
	),
	(int) 6 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0007',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41101502',
			'seq_end' => '41106488',
			'region_length' => '4986',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000241241-ENSG00000212722'
		)
	),
	(int) 7 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0008',
			'tax_id' => '10090',
			'chromosome' => '11',
			'seq_start' => '99634111',
			'seq_end' => '99644089',
			'region_length' => '9978',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000044649-ENSMUSG00000045109'
		)
	),
	(int) 8 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0009',
			'tax_id' => '10090',
			'chromosome' => '11',
			'seq_start' => '99643106',
			'seq_end' => '99650236',
			'region_length' => '7130',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000045109-ENSMUSG00000078130'
		)
	),
	(int) 9 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_000A',
			'tax_id' => '10090',
			'chromosome' => '11',
			'seq_start' => '99627224',
			'seq_end' => '99635084',
			'region_length' => '7860',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000063251-ENSMUSG00000044649'
		)
	),
	(int) 10 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_000B',
			'tax_id' => '10090',
			'chromosome' => '11',
			'seq_start' => '99649599',
			'seq_end' => '99658960',
			'region_length' => '9361',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000078130-ENSMUSG00000069718'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Bladder',
	(int) 3 => 'Brain',
	(int) 6 => 'Heart',
	(int) 8 => 'Lung',
	(int) 13 => 'Muscle',
	(int) 21 => 'Ovary',
	(int) 25 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 39
$longest_tissue_len = (int) 7
$transcript_data = array(
	'ENST00000345847' => array(
		'start' => '41139433',
		'end' => '41140487',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-6-001'
	),
	'ENST00000343246' => array(
		'start' => '41148924',
		'end' => '41149802',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-5-001'
	),
	'ENST00000318329' => array(
		'start' => '41097527',
		'end' => '41098084',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-8-201'
	),
	'ENST00000333822' => array(
		'start' => '41096981',
		'end' => '41098141',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-8-001'
	),
	'ENST00000440582' => array(
		'start' => '41101502',
		'end' => '41102209',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-16P-001'
	),
	'ENST00000391413' => array(
		'start' => '41117181',
		'end' => '41118360',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-11-001'
	),
	'ENST00000394014' => array(
		'start' => '41123091',
		'end' => '41124167',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-12-001'
	),
	'ENST00000391415' => array(
		'start' => '41105332',
		'end' => '41106488',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-9-001'
	),
	'ENST00000617453' => array(
		'start' => '41105389',
		'end' => '41106021',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-9-201'
	),
	'ENST00000391417' => array(
		'start' => '41084150',
		'end' => '41085141',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-7-001'
	),
	'ENST00000612231' => array(
		'start' => '41084181',
		'end' => '41106067',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-7-201'
	),
	'ENST00000621138' => array(
		'start' => '41084207',
		'end' => '41084674',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-7-202'
	),
	'ENSMUST00000058987' => array(
		'start' => '99634111',
		'end' => '99635084',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Krtap4-2-001'
	),
	'ENSMUST00000055121' => array(
		'start' => '99643106',
		'end' => '99644089',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Krtap4-7-001'
	),
	'ENSMUST00000073126' => array(
		'start' => '99649660',
		'end' => '99650181',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Gm11555-201'
	),
	'ENSMUST00000104929' => array(
		'start' => '99649599',
		'end' => '99650236',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Gm11555-001'
	),
	'ENSMUST00000081007' => array(
		'start' => '99627224',
		'end' => '99628238',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Krtap4-1-001'
	),
	'ENSMUST00000092695' => array(
		'start' => '99657949',
		'end' => '99658960',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Gm11563-001'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0005PE_0003' => array(
		'genes_in_region' => array(
			'ENSG00000212721' => array(
				[maximum depth reached]
			),
			'ENSG00000213416' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Heart'
		)
	),
	'CIL_0005PE_0004' => array(
		'genes_in_region' => array(
			'ENSG00000212721' => array(
				[maximum depth reached]
			),
			'ENSG00000240871' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Lung',
			(int) 2 => 'Brain'
		)
	),
	'CIL_0005PE_0005' => array(
		'genes_in_region' => array(
			'ENSG00000213416' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Heart'
		)
	),
	'CIL_0005PE_0006' => array(
		'genes_in_region' => array(
			'ENSG00000240871' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0005PE_0007' => array(
		'genes_in_region' => array(
			'ENSG00000240871' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0005PE_0008' => array(
		'genes_in_region' => array(
			'ENSMUSG00000044649' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000045109' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Lung',
			(int) 2 => 'Muscle',
			(int) 3 => 'Ovary',
			(int) 4 => 'Muscle'
		)
	),
	'CIL_0005PE_0009' => array(
		'genes_in_region' => array(
			'ENSMUSG00000045109' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000078130' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Muscle',
			(int) 1 => 'Muscle'
		)
	),
	'CIL_0005PE_000A' => array(
		'genes_in_region' => array(
			'ENSMUSG00000044649' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000063251' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Lung',
			(int) 2 => 'Muscle',
			(int) 3 => 'Ovary',
			(int) 4 => 'Bladder',
			(int) 5 => 'Muscle',
			(int) 6 => 'Testis'
		)
	),
	'CIL_0005PE_000B' => array(
		'genes_in_region' => array(
			'ENSMUSG00000069718' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000078130' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Muscle',
			(int) 1 => 'Muscle'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0005PE_0001',
		'tax_id' => '9606',
		'chromosome' => '17',
		'seq_start' => '41139433',
		'seq_end' => '41149802',
		'region_length' => '10369',
		'region_type' => 'CGP',
		'el_id' => 'ENSG00000198090-ENSG00000198271'
	)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0005PE_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0007' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0008' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0009' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_000A' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_000B' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000198090' => 'keratin associated protein 4-6',
		'ENSG00000198271' => 'keratin associated protein 4-5',
		'ENSG00000204880' => 'keratin associated protein 4-8',
		'ENSG00000241241' => 'keratin associated protein 4-16, pseudogene',
		'ENSG00000212721' => 'keratin associated protein 4-11',
		'ENSG00000213416' => 'keratin associated protein 4-12',
		'ENSG00000212722' => 'keratin associated protein 4-9',
		'ENSG00000240871' => 'keratin associated protein 4-7',
		'ENSMUSG00000044649' => 'keratin associated protein 4-2',
		'ENSMUSG00000045109' => 'keratin associated protein 4-7',
		'ENSMUSG00000078130' => 'predicted gene 11555',
		'ENSMUSG00000063251' => 'keratin associated protein 4-1',
		'ENSMUSG00000069718' => 'predicted gene 11563'
	),
	'gene_name_arr' => array(
		'ENSG00000198090' => 'KRTAP4-6',
		'ENSG00000198271' => 'KRTAP4-5',
		'ENSG00000204880' => 'KRTAP4-8',
		'ENSG00000241241' => 'KRTAP4-16P',
		'ENSG00000212721' => 'KRTAP4-11',
		'ENSG00000213416' => 'KRTAP4-12',
		'ENSG00000212722' => 'KRTAP4-9',
		'ENSG00000240871' => 'KRTAP4-7',
		'ENSMUSG00000044649' => 'Krtap4-2',
		'ENSMUSG00000045109' => 'Krtap4-7',
		'ENSMUSG00000078130' => 'Gm11555',
		'ENSMUSG00000063251' => 'Krtap4-1',
		'ENSMUSG00000069718' => 'Gm11563'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 3 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 4 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 5 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 6 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 7 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 8 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 9 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 10 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Bladder',
		(int) 3 => 'Brain',
		(int) 6 => 'Heart',
		(int) 8 => 'Lung',
		(int) 13 => 'Muscle',
		(int) 21 => 'Ovary',
		(int) 25 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 39,
	'longest_tissue_len' => (int) 7,
	'transcript_data' => array(
		'ENST00000345847' => array(
			'start' => '41139433',
			'end' => '41140487',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-6-001'
		),
		'ENST00000343246' => array(
			'start' => '41148924',
			'end' => '41149802',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-5-001'
		),
		'ENST00000318329' => array(
			'start' => '41097527',
			'end' => '41098084',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-8-201'
		),
		'ENST00000333822' => array(
			'start' => '41096981',
			'end' => '41098141',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-8-001'
		),
		'ENST00000440582' => array(
			'start' => '41101502',
			'end' => '41102209',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-16P-001'
		),
		'ENST00000391413' => array(
			'start' => '41117181',
			'end' => '41118360',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-11-001'
		),
		'ENST00000394014' => array(
			'start' => '41123091',
			'end' => '41124167',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-12-001'
		),
		'ENST00000391415' => array(
			'start' => '41105332',
			'end' => '41106488',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-9-001'
		),
		'ENST00000617453' => array(
			'start' => '41105389',
			'end' => '41106021',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-9-201'
		),
		'ENST00000391417' => array(
			'start' => '41084150',
			'end' => '41085141',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-7-001'
		),
		'ENST00000612231' => array(
			'start' => '41084181',
			'end' => '41106067',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-7-201'
		),
		'ENST00000621138' => array(
			'start' => '41084207',
			'end' => '41084674',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-7-202'
		),
		'ENSMUST00000058987' => array(
			'start' => '99634111',
			'end' => '99635084',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Krtap4-2-001'
		),
		'ENSMUST00000055121' => array(
			'start' => '99643106',
			'end' => '99644089',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Krtap4-7-001'
		),
		'ENSMUST00000073126' => array(
			'start' => '99649660',
			'end' => '99650181',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Gm11555-201'
		),
		'ENSMUST00000104929' => array(
			'start' => '99649599',
			'end' => '99650236',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Gm11555-001'
		),
		'ENSMUST00000081007' => array(
			'start' => '99627224',
			'end' => '99628238',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Krtap4-1-001'
		),
		'ENSMUST00000092695' => array(
			'start' => '99657949',
			'end' => '99658960',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Gm11563-001'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0005PE_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0007' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0008' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0009' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_000A' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_000B' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0005PE_0003' => array(
		'genes_in_region' => array(
			'ENSG00000212721' => array(
				[maximum depth reached]
			),
			'ENSG00000213416' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Heart'
		)
	),
	'CIL_0005PE_0004' => array(
		'genes_in_region' => array(
			'ENSG00000212721' => array(
				[maximum depth reached]
			),
			'ENSG00000240871' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Lung',
			(int) 2 => 'Brain'
		)
	),
	'CIL_0005PE_0005' => array(
		'genes_in_region' => array(
			'ENSG00000213416' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Heart'
		)
	),
	'CIL_0005PE_0006' => array(
		'genes_in_region' => array(
			'ENSG00000240871' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0005PE_0007' => array(
		'genes_in_region' => array(
			'ENSG00000240871' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0005PE_0008' => array(
		'genes_in_region' => array(
			'ENSMUSG00000044649' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000045109' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Lung',
			(int) 2 => 'Muscle',
			(int) 3 => 'Ovary',
			(int) 4 => 'Muscle'
		)
	),
	'CIL_0005PE_0009' => array(
		'genes_in_region' => array(
			'ENSMUSG00000045109' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000078130' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Muscle',
			(int) 1 => 'Muscle'
		)
	),
	'CIL_0005PE_000A' => array(
		'genes_in_region' => array(
			'ENSMUSG00000044649' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000063251' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Lung',
			(int) 2 => 'Muscle',
			(int) 3 => 'Ovary',
			(int) 4 => 'Bladder',
			(int) 5 => 'Muscle',
			(int) 6 => 'Testis'
		)
	),
	'CIL_0005PE_000B' => array(
		'genes_in_region' => array(
			'ENSMUSG00000069718' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000078130' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Muscle',
			(int) 1 => 'Muscle'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000198090' => 'keratin associated protein 4-6',
	'ENSG00000198271' => 'keratin associated protein 4-5',
	'ENSG00000204880' => 'keratin associated protein 4-8',
	'ENSG00000241241' => 'keratin associated protein 4-16, pseudogene',
	'ENSG00000212721' => 'keratin associated protein 4-11',
	'ENSG00000213416' => 'keratin associated protein 4-12',
	'ENSG00000212722' => 'keratin associated protein 4-9',
	'ENSG00000240871' => 'keratin associated protein 4-7',
	'ENSMUSG00000044649' => 'keratin associated protein 4-2',
	'ENSMUSG00000045109' => 'keratin associated protein 4-7',
	'ENSMUSG00000078130' => 'predicted gene 11555',
	'ENSMUSG00000063251' => 'keratin associated protein 4-1',
	'ENSMUSG00000069718' => 'predicted gene 11563'
)
$gene_name_arr = array(
	'ENSG00000198090' => 'KRTAP4-6',
	'ENSG00000198271' => 'KRTAP4-5',
	'ENSG00000204880' => 'KRTAP4-8',
	'ENSG00000241241' => 'KRTAP4-16P',
	'ENSG00000212721' => 'KRTAP4-11',
	'ENSG00000213416' => 'KRTAP4-12',
	'ENSG00000212722' => 'KRTAP4-9',
	'ENSG00000240871' => 'KRTAP4-7',
	'ENSMUSG00000044649' => 'Krtap4-2',
	'ENSMUSG00000045109' => 'Krtap4-7',
	'ENSMUSG00000078130' => 'Gm11555',
	'ENSMUSG00000063251' => 'Krtap4-1',
	'ENSMUSG00000069718' => 'Gm11563'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0001',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41139433',
			'seq_end' => '41149802',
			'region_length' => '10369',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000198090-ENSG00000198271'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0002',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41096981',
			'seq_end' => '41102209',
			'region_length' => '5228',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000204880-ENSG00000241241'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0003',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41117181',
			'seq_end' => '41124167',
			'region_length' => '6986',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000212721-ENSG00000213416'
		)
	),
	(int) 3 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0004',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41105332',
			'seq_end' => '41118360',
			'region_length' => '13028',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000212722-ENSG00000212721'
		)
	),
	(int) 4 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0005',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41123091',
			'seq_end' => '41140487',
			'region_length' => '17396',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000213416-ENSG00000198090'
		)
	),
	(int) 5 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0006',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41084150',
			'seq_end' => '41106067',
			'region_length' => '21917',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000240871-ENSG00000240871'
		)
	),
	(int) 6 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0007',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41101502',
			'seq_end' => '41106488',
			'region_length' => '4986',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000241241-ENSG00000212722'
		)
	),
	(int) 7 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0008',
			'tax_id' => '10090',
			'chromosome' => '11',
			'seq_start' => '99634111',
			'seq_end' => '99644089',
			'region_length' => '9978',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000044649-ENSMUSG00000045109'
		)
	),
	(int) 8 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0009',
			'tax_id' => '10090',
			'chromosome' => '11',
			'seq_start' => '99643106',
			'seq_end' => '99650236',
			'region_length' => '7130',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000045109-ENSMUSG00000078130'
		)
	),
	(int) 9 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_000A',
			'tax_id' => '10090',
			'chromosome' => '11',
			'seq_start' => '99627224',
			'seq_end' => '99635084',
			'region_length' => '7860',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000063251-ENSMUSG00000044649'
		)
	),
	(int) 10 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_000B',
			'tax_id' => '10090',
			'chromosome' => '11',
			'seq_start' => '99649599',
			'seq_end' => '99658960',
			'region_length' => '9361',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000078130-ENSMUSG00000069718'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Bladder',
	(int) 3 => 'Brain',
	(int) 6 => 'Heart',
	(int) 8 => 'Lung',
	(int) 13 => 'Muscle',
	(int) 21 => 'Ovary',
	(int) 25 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 39
$longest_tissue_len = (int) 7
$transcript_data = array(
	'ENST00000345847' => array(
		'start' => '41139433',
		'end' => '41140487',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-6-001'
	),
	'ENST00000343246' => array(
		'start' => '41148924',
		'end' => '41149802',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-5-001'
	),
	'ENST00000318329' => array(
		'start' => '41097527',
		'end' => '41098084',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-8-201'
	),
	'ENST00000333822' => array(
		'start' => '41096981',
		'end' => '41098141',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-8-001'
	),
	'ENST00000440582' => array(
		'start' => '41101502',
		'end' => '41102209',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-16P-001'
	),
	'ENST00000391413' => array(
		'start' => '41117181',
		'end' => '41118360',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-11-001'
	),
	'ENST00000394014' => array(
		'start' => '41123091',
		'end' => '41124167',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-12-001'
	),
	'ENST00000391415' => array(
		'start' => '41105332',
		'end' => '41106488',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-9-001'
	),
	'ENST00000617453' => array(
		'start' => '41105389',
		'end' => '41106021',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-9-201'
	),
	'ENST00000391417' => array(
		'start' => '41084150',
		'end' => '41085141',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-7-001'
	),
	'ENST00000612231' => array(
		'start' => '41084181',
		'end' => '41106067',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-7-201'
	),
	'ENST00000621138' => array(
		'start' => '41084207',
		'end' => '41084674',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-7-202'
	),
	'ENSMUST00000058987' => array(
		'start' => '99634111',
		'end' => '99635084',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Krtap4-2-001'
	),
	'ENSMUST00000055121' => array(
		'start' => '99643106',
		'end' => '99644089',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Krtap4-7-001'
	),
	'ENSMUST00000073126' => array(
		'start' => '99649660',
		'end' => '99650181',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Gm11555-201'
	),
	'ENSMUST00000104929' => array(
		'start' => '99649599',
		'end' => '99650236',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Gm11555-001'
	),
	'ENSMUST00000081007' => array(
		'start' => '99627224',
		'end' => '99628238',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Krtap4-1-001'
	),
	'ENSMUST00000092695' => array(
		'start' => '99657949',
		'end' => '99658960',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Gm11563-001'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0005PE_0003' => array(
		'genes_in_region' => array(
			'ENSG00000212721' => array(
				[maximum depth reached]
			),
			'ENSG00000213416' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Heart'
		)
	),
	'CIL_0005PE_0004' => array(
		'genes_in_region' => array(
			'ENSG00000212721' => array(
				[maximum depth reached]
			),
			'ENSG00000240871' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Lung',
			(int) 2 => 'Brain'
		)
	),
	'CIL_0005PE_0005' => array(
		'genes_in_region' => array(
			'ENSG00000213416' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Heart'
		)
	),
	'CIL_0005PE_0006' => array(
		'genes_in_region' => array(
			'ENSG00000240871' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0005PE_0007' => array(
		'genes_in_region' => array(
			'ENSG00000240871' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0005PE_0008' => array(
		'genes_in_region' => array(
			'ENSMUSG00000044649' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000045109' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Lung',
			(int) 2 => 'Muscle',
			(int) 3 => 'Ovary',
			(int) 4 => 'Muscle'
		)
	),
	'CIL_0005PE_0009' => array(
		'genes_in_region' => array(
			'ENSMUSG00000045109' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000078130' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Muscle',
			(int) 1 => 'Muscle'
		)
	),
	'CIL_0005PE_000A' => array(
		'genes_in_region' => array(
			'ENSMUSG00000044649' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000063251' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Lung',
			(int) 2 => 'Muscle',
			(int) 3 => 'Ovary',
			(int) 4 => 'Bladder',
			(int) 5 => 'Muscle',
			(int) 6 => 'Testis'
		)
	),
	'CIL_0005PE_000B' => array(
		'genes_in_region' => array(
			'ENSMUSG00000069718' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000078130' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Muscle',
			(int) 1 => 'Muscle'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0005PE_0001',
		'tax_id' => '9606',
		'chromosome' => '17',
		'seq_start' => '41139433',
		'seq_end' => '41149802',
		'region_length' => '10369',
		'region_type' => 'CGP',
		'el_id' => 'ENSG00000198090-ENSG00000198271'
	)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Source ID		Type	Tax ID	Position
ENSG00000198090-ENSG00000198271		CGP	9606	17:41139433-41149802
Gene		Transcript	Position	Biotype

CIL_0005PE_0002 (Click to Hide/Show)

Notice (8): Undefined index: CIL_0005PE_0002 [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0005PE_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0007' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0008' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0009' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_000A' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_000B' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000198090' => 'keratin associated protein 4-6',
		'ENSG00000198271' => 'keratin associated protein 4-5',
		'ENSG00000204880' => 'keratin associated protein 4-8',
		'ENSG00000241241' => 'keratin associated protein 4-16, pseudogene',
		'ENSG00000212721' => 'keratin associated protein 4-11',
		'ENSG00000213416' => 'keratin associated protein 4-12',
		'ENSG00000212722' => 'keratin associated protein 4-9',
		'ENSG00000240871' => 'keratin associated protein 4-7',
		'ENSMUSG00000044649' => 'keratin associated protein 4-2',
		'ENSMUSG00000045109' => 'keratin associated protein 4-7',
		'ENSMUSG00000078130' => 'predicted gene 11555',
		'ENSMUSG00000063251' => 'keratin associated protein 4-1',
		'ENSMUSG00000069718' => 'predicted gene 11563'
	),
	'gene_name_arr' => array(
		'ENSG00000198090' => 'KRTAP4-6',
		'ENSG00000198271' => 'KRTAP4-5',
		'ENSG00000204880' => 'KRTAP4-8',
		'ENSG00000241241' => 'KRTAP4-16P',
		'ENSG00000212721' => 'KRTAP4-11',
		'ENSG00000213416' => 'KRTAP4-12',
		'ENSG00000212722' => 'KRTAP4-9',
		'ENSG00000240871' => 'KRTAP4-7',
		'ENSMUSG00000044649' => 'Krtap4-2',
		'ENSMUSG00000045109' => 'Krtap4-7',
		'ENSMUSG00000078130' => 'Gm11555',
		'ENSMUSG00000063251' => 'Krtap4-1',
		'ENSMUSG00000069718' => 'Gm11563'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 3 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 4 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 5 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 6 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 7 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 8 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 9 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 10 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Bladder',
		(int) 3 => 'Brain',
		(int) 6 => 'Heart',
		(int) 8 => 'Lung',
		(int) 13 => 'Muscle',
		(int) 21 => 'Ovary',
		(int) 25 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 39,
	'longest_tissue_len' => (int) 7,
	'transcript_data' => array(
		'ENST00000345847' => array(
			'start' => '41139433',
			'end' => '41140487',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-6-001'
		),
		'ENST00000343246' => array(
			'start' => '41148924',
			'end' => '41149802',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-5-001'
		),
		'ENST00000318329' => array(
			'start' => '41097527',
			'end' => '41098084',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-8-201'
		),
		'ENST00000333822' => array(
			'start' => '41096981',
			'end' => '41098141',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-8-001'
		),
		'ENST00000440582' => array(
			'start' => '41101502',
			'end' => '41102209',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-16P-001'
		),
		'ENST00000391413' => array(
			'start' => '41117181',
			'end' => '41118360',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-11-001'
		),
		'ENST00000394014' => array(
			'start' => '41123091',
			'end' => '41124167',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-12-001'
		),
		'ENST00000391415' => array(
			'start' => '41105332',
			'end' => '41106488',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-9-001'
		),
		'ENST00000617453' => array(
			'start' => '41105389',
			'end' => '41106021',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-9-201'
		),
		'ENST00000391417' => array(
			'start' => '41084150',
			'end' => '41085141',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-7-001'
		),
		'ENST00000612231' => array(
			'start' => '41084181',
			'end' => '41106067',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-7-201'
		),
		'ENST00000621138' => array(
			'start' => '41084207',
			'end' => '41084674',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-7-202'
		),
		'ENSMUST00000058987' => array(
			'start' => '99634111',
			'end' => '99635084',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Krtap4-2-001'
		),
		'ENSMUST00000055121' => array(
			'start' => '99643106',
			'end' => '99644089',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Krtap4-7-001'
		),
		'ENSMUST00000073126' => array(
			'start' => '99649660',
			'end' => '99650181',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Gm11555-201'
		),
		'ENSMUST00000104929' => array(
			'start' => '99649599',
			'end' => '99650236',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Gm11555-001'
		),
		'ENSMUST00000081007' => array(
			'start' => '99627224',
			'end' => '99628238',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Krtap4-1-001'
		),
		'ENSMUST00000092695' => array(
			'start' => '99657949',
			'end' => '99658960',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Gm11563-001'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0005PE_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0007' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0008' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0009' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_000A' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_000B' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0005PE_0003' => array(
		'genes_in_region' => array(
			'ENSG00000212721' => array(
				[maximum depth reached]
			),
			'ENSG00000213416' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Heart'
		)
	),
	'CIL_0005PE_0004' => array(
		'genes_in_region' => array(
			'ENSG00000212721' => array(
				[maximum depth reached]
			),
			'ENSG00000240871' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Lung',
			(int) 2 => 'Brain'
		)
	),
	'CIL_0005PE_0005' => array(
		'genes_in_region' => array(
			'ENSG00000213416' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Heart'
		)
	),
	'CIL_0005PE_0006' => array(
		'genes_in_region' => array(
			'ENSG00000240871' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0005PE_0007' => array(
		'genes_in_region' => array(
			'ENSG00000240871' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0005PE_0008' => array(
		'genes_in_region' => array(
			'ENSMUSG00000044649' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000045109' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Lung',
			(int) 2 => 'Muscle',
			(int) 3 => 'Ovary',
			(int) 4 => 'Muscle'
		)
	),
	'CIL_0005PE_0009' => array(
		'genes_in_region' => array(
			'ENSMUSG00000045109' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000078130' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Muscle',
			(int) 1 => 'Muscle'
		)
	),
	'CIL_0005PE_000A' => array(
		'genes_in_region' => array(
			'ENSMUSG00000044649' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000063251' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Lung',
			(int) 2 => 'Muscle',
			(int) 3 => 'Ovary',
			(int) 4 => 'Bladder',
			(int) 5 => 'Muscle',
			(int) 6 => 'Testis'
		)
	),
	'CIL_0005PE_000B' => array(
		'genes_in_region' => array(
			'ENSMUSG00000069718' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000078130' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Muscle',
			(int) 1 => 'Muscle'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000198090' => 'keratin associated protein 4-6',
	'ENSG00000198271' => 'keratin associated protein 4-5',
	'ENSG00000204880' => 'keratin associated protein 4-8',
	'ENSG00000241241' => 'keratin associated protein 4-16, pseudogene',
	'ENSG00000212721' => 'keratin associated protein 4-11',
	'ENSG00000213416' => 'keratin associated protein 4-12',
	'ENSG00000212722' => 'keratin associated protein 4-9',
	'ENSG00000240871' => 'keratin associated protein 4-7',
	'ENSMUSG00000044649' => 'keratin associated protein 4-2',
	'ENSMUSG00000045109' => 'keratin associated protein 4-7',
	'ENSMUSG00000078130' => 'predicted gene 11555',
	'ENSMUSG00000063251' => 'keratin associated protein 4-1',
	'ENSMUSG00000069718' => 'predicted gene 11563'
)
$gene_name_arr = array(
	'ENSG00000198090' => 'KRTAP4-6',
	'ENSG00000198271' => 'KRTAP4-5',
	'ENSG00000204880' => 'KRTAP4-8',
	'ENSG00000241241' => 'KRTAP4-16P',
	'ENSG00000212721' => 'KRTAP4-11',
	'ENSG00000213416' => 'KRTAP4-12',
	'ENSG00000212722' => 'KRTAP4-9',
	'ENSG00000240871' => 'KRTAP4-7',
	'ENSMUSG00000044649' => 'Krtap4-2',
	'ENSMUSG00000045109' => 'Krtap4-7',
	'ENSMUSG00000078130' => 'Gm11555',
	'ENSMUSG00000063251' => 'Krtap4-1',
	'ENSMUSG00000069718' => 'Gm11563'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0001',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41139433',
			'seq_end' => '41149802',
			'region_length' => '10369',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000198090-ENSG00000198271'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0002',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41096981',
			'seq_end' => '41102209',
			'region_length' => '5228',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000204880-ENSG00000241241'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0003',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41117181',
			'seq_end' => '41124167',
			'region_length' => '6986',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000212721-ENSG00000213416'
		)
	),
	(int) 3 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0004',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41105332',
			'seq_end' => '41118360',
			'region_length' => '13028',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000212722-ENSG00000212721'
		)
	),
	(int) 4 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0005',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41123091',
			'seq_end' => '41140487',
			'region_length' => '17396',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000213416-ENSG00000198090'
		)
	),
	(int) 5 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0006',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41084150',
			'seq_end' => '41106067',
			'region_length' => '21917',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000240871-ENSG00000240871'
		)
	),
	(int) 6 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0007',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41101502',
			'seq_end' => '41106488',
			'region_length' => '4986',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000241241-ENSG00000212722'
		)
	),
	(int) 7 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0008',
			'tax_id' => '10090',
			'chromosome' => '11',
			'seq_start' => '99634111',
			'seq_end' => '99644089',
			'region_length' => '9978',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000044649-ENSMUSG00000045109'
		)
	),
	(int) 8 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0009',
			'tax_id' => '10090',
			'chromosome' => '11',
			'seq_start' => '99643106',
			'seq_end' => '99650236',
			'region_length' => '7130',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000045109-ENSMUSG00000078130'
		)
	),
	(int) 9 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_000A',
			'tax_id' => '10090',
			'chromosome' => '11',
			'seq_start' => '99627224',
			'seq_end' => '99635084',
			'region_length' => '7860',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000063251-ENSMUSG00000044649'
		)
	),
	(int) 10 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_000B',
			'tax_id' => '10090',
			'chromosome' => '11',
			'seq_start' => '99649599',
			'seq_end' => '99658960',
			'region_length' => '9361',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000078130-ENSMUSG00000069718'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Bladder',
	(int) 3 => 'Brain',
	(int) 6 => 'Heart',
	(int) 8 => 'Lung',
	(int) 13 => 'Muscle',
	(int) 21 => 'Ovary',
	(int) 25 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 39
$longest_tissue_len = (int) 7
$transcript_data = array(
	'ENST00000345847' => array(
		'start' => '41139433',
		'end' => '41140487',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-6-001'
	),
	'ENST00000343246' => array(
		'start' => '41148924',
		'end' => '41149802',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-5-001'
	),
	'ENST00000318329' => array(
		'start' => '41097527',
		'end' => '41098084',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-8-201'
	),
	'ENST00000333822' => array(
		'start' => '41096981',
		'end' => '41098141',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-8-001'
	),
	'ENST00000440582' => array(
		'start' => '41101502',
		'end' => '41102209',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-16P-001'
	),
	'ENST00000391413' => array(
		'start' => '41117181',
		'end' => '41118360',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-11-001'
	),
	'ENST00000394014' => array(
		'start' => '41123091',
		'end' => '41124167',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-12-001'
	),
	'ENST00000391415' => array(
		'start' => '41105332',
		'end' => '41106488',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-9-001'
	),
	'ENST00000617453' => array(
		'start' => '41105389',
		'end' => '41106021',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-9-201'
	),
	'ENST00000391417' => array(
		'start' => '41084150',
		'end' => '41085141',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-7-001'
	),
	'ENST00000612231' => array(
		'start' => '41084181',
		'end' => '41106067',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-7-201'
	),
	'ENST00000621138' => array(
		'start' => '41084207',
		'end' => '41084674',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-7-202'
	),
	'ENSMUST00000058987' => array(
		'start' => '99634111',
		'end' => '99635084',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Krtap4-2-001'
	),
	'ENSMUST00000055121' => array(
		'start' => '99643106',
		'end' => '99644089',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Krtap4-7-001'
	),
	'ENSMUST00000073126' => array(
		'start' => '99649660',
		'end' => '99650181',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Gm11555-201'
	),
	'ENSMUST00000104929' => array(
		'start' => '99649599',
		'end' => '99650236',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Gm11555-001'
	),
	'ENSMUST00000081007' => array(
		'start' => '99627224',
		'end' => '99628238',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Krtap4-1-001'
	),
	'ENSMUST00000092695' => array(
		'start' => '99657949',
		'end' => '99658960',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Gm11563-001'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0005PE_0003' => array(
		'genes_in_region' => array(
			'ENSG00000212721' => array(
				[maximum depth reached]
			),
			'ENSG00000213416' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Heart'
		)
	),
	'CIL_0005PE_0004' => array(
		'genes_in_region' => array(
			'ENSG00000212721' => array(
				[maximum depth reached]
			),
			'ENSG00000240871' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Lung',
			(int) 2 => 'Brain'
		)
	),
	'CIL_0005PE_0005' => array(
		'genes_in_region' => array(
			'ENSG00000213416' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Heart'
		)
	),
	'CIL_0005PE_0006' => array(
		'genes_in_region' => array(
			'ENSG00000240871' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0005PE_0007' => array(
		'genes_in_region' => array(
			'ENSG00000240871' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0005PE_0008' => array(
		'genes_in_region' => array(
			'ENSMUSG00000044649' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000045109' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Lung',
			(int) 2 => 'Muscle',
			(int) 3 => 'Ovary',
			(int) 4 => 'Muscle'
		)
	),
	'CIL_0005PE_0009' => array(
		'genes_in_region' => array(
			'ENSMUSG00000045109' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000078130' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Muscle',
			(int) 1 => 'Muscle'
		)
	),
	'CIL_0005PE_000A' => array(
		'genes_in_region' => array(
			'ENSMUSG00000044649' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000063251' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Lung',
			(int) 2 => 'Muscle',
			(int) 3 => 'Ovary',
			(int) 4 => 'Bladder',
			(int) 5 => 'Muscle',
			(int) 6 => 'Testis'
		)
	),
	'CIL_0005PE_000B' => array(
		'genes_in_region' => array(
			'ENSMUSG00000069718' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000078130' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Muscle',
			(int) 1 => 'Muscle'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0005PE_0002',
		'tax_id' => '9606',
		'chromosome' => '17',
		'seq_start' => '41096981',
		'seq_end' => '41102209',
		'region_length' => '5228',
		'region_type' => 'CGP',
		'el_id' => 'ENSG00000204880-ENSG00000241241'
	)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0005PE_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0007' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0008' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0009' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_000A' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_000B' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000198090' => 'keratin associated protein 4-6',
		'ENSG00000198271' => 'keratin associated protein 4-5',
		'ENSG00000204880' => 'keratin associated protein 4-8',
		'ENSG00000241241' => 'keratin associated protein 4-16, pseudogene',
		'ENSG00000212721' => 'keratin associated protein 4-11',
		'ENSG00000213416' => 'keratin associated protein 4-12',
		'ENSG00000212722' => 'keratin associated protein 4-9',
		'ENSG00000240871' => 'keratin associated protein 4-7',
		'ENSMUSG00000044649' => 'keratin associated protein 4-2',
		'ENSMUSG00000045109' => 'keratin associated protein 4-7',
		'ENSMUSG00000078130' => 'predicted gene 11555',
		'ENSMUSG00000063251' => 'keratin associated protein 4-1',
		'ENSMUSG00000069718' => 'predicted gene 11563'
	),
	'gene_name_arr' => array(
		'ENSG00000198090' => 'KRTAP4-6',
		'ENSG00000198271' => 'KRTAP4-5',
		'ENSG00000204880' => 'KRTAP4-8',
		'ENSG00000241241' => 'KRTAP4-16P',
		'ENSG00000212721' => 'KRTAP4-11',
		'ENSG00000213416' => 'KRTAP4-12',
		'ENSG00000212722' => 'KRTAP4-9',
		'ENSG00000240871' => 'KRTAP4-7',
		'ENSMUSG00000044649' => 'Krtap4-2',
		'ENSMUSG00000045109' => 'Krtap4-7',
		'ENSMUSG00000078130' => 'Gm11555',
		'ENSMUSG00000063251' => 'Krtap4-1',
		'ENSMUSG00000069718' => 'Gm11563'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 3 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 4 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 5 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 6 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 7 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 8 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 9 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 10 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Bladder',
		(int) 3 => 'Brain',
		(int) 6 => 'Heart',
		(int) 8 => 'Lung',
		(int) 13 => 'Muscle',
		(int) 21 => 'Ovary',
		(int) 25 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 39,
	'longest_tissue_len' => (int) 7,
	'transcript_data' => array(
		'ENST00000345847' => array(
			'start' => '41139433',
			'end' => '41140487',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-6-001'
		),
		'ENST00000343246' => array(
			'start' => '41148924',
			'end' => '41149802',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-5-001'
		),
		'ENST00000318329' => array(
			'start' => '41097527',
			'end' => '41098084',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-8-201'
		),
		'ENST00000333822' => array(
			'start' => '41096981',
			'end' => '41098141',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-8-001'
		),
		'ENST00000440582' => array(
			'start' => '41101502',
			'end' => '41102209',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-16P-001'
		),
		'ENST00000391413' => array(
			'start' => '41117181',
			'end' => '41118360',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-11-001'
		),
		'ENST00000394014' => array(
			'start' => '41123091',
			'end' => '41124167',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-12-001'
		),
		'ENST00000391415' => array(
			'start' => '41105332',
			'end' => '41106488',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-9-001'
		),
		'ENST00000617453' => array(
			'start' => '41105389',
			'end' => '41106021',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-9-201'
		),
		'ENST00000391417' => array(
			'start' => '41084150',
			'end' => '41085141',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-7-001'
		),
		'ENST00000612231' => array(
			'start' => '41084181',
			'end' => '41106067',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-7-201'
		),
		'ENST00000621138' => array(
			'start' => '41084207',
			'end' => '41084674',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'KRTAP4-7-202'
		),
		'ENSMUST00000058987' => array(
			'start' => '99634111',
			'end' => '99635084',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Krtap4-2-001'
		),
		'ENSMUST00000055121' => array(
			'start' => '99643106',
			'end' => '99644089',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Krtap4-7-001'
		),
		'ENSMUST00000073126' => array(
			'start' => '99649660',
			'end' => '99650181',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Gm11555-201'
		),
		'ENSMUST00000104929' => array(
			'start' => '99649599',
			'end' => '99650236',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Gm11555-001'
		),
		'ENSMUST00000081007' => array(
			'start' => '99627224',
			'end' => '99628238',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Krtap4-1-001'
		),
		'ENSMUST00000092695' => array(
			'start' => '99657949',
			'end' => '99658960',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Gm11563-001'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0005PE_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0007' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0008' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_0009' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_000A' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005PE_000B' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0005PE_0003' => array(
		'genes_in_region' => array(
			'ENSG00000212721' => array(
				[maximum depth reached]
			),
			'ENSG00000213416' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Heart'
		)
	),
	'CIL_0005PE_0004' => array(
		'genes_in_region' => array(
			'ENSG00000212721' => array(
				[maximum depth reached]
			),
			'ENSG00000240871' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Lung',
			(int) 2 => 'Brain'
		)
	),
	'CIL_0005PE_0005' => array(
		'genes_in_region' => array(
			'ENSG00000213416' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Heart'
		)
	),
	'CIL_0005PE_0006' => array(
		'genes_in_region' => array(
			'ENSG00000240871' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0005PE_0007' => array(
		'genes_in_region' => array(
			'ENSG00000240871' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0005PE_0008' => array(
		'genes_in_region' => array(
			'ENSMUSG00000044649' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000045109' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Lung',
			(int) 2 => 'Muscle',
			(int) 3 => 'Ovary',
			(int) 4 => 'Muscle'
		)
	),
	'CIL_0005PE_0009' => array(
		'genes_in_region' => array(
			'ENSMUSG00000045109' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000078130' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Muscle',
			(int) 1 => 'Muscle'
		)
	),
	'CIL_0005PE_000A' => array(
		'genes_in_region' => array(
			'ENSMUSG00000044649' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000063251' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Lung',
			(int) 2 => 'Muscle',
			(int) 3 => 'Ovary',
			(int) 4 => 'Bladder',
			(int) 5 => 'Muscle',
			(int) 6 => 'Testis'
		)
	),
	'CIL_0005PE_000B' => array(
		'genes_in_region' => array(
			'ENSMUSG00000069718' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000078130' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Muscle',
			(int) 1 => 'Muscle'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000198090' => 'keratin associated protein 4-6',
	'ENSG00000198271' => 'keratin associated protein 4-5',
	'ENSG00000204880' => 'keratin associated protein 4-8',
	'ENSG00000241241' => 'keratin associated protein 4-16, pseudogene',
	'ENSG00000212721' => 'keratin associated protein 4-11',
	'ENSG00000213416' => 'keratin associated protein 4-12',
	'ENSG00000212722' => 'keratin associated protein 4-9',
	'ENSG00000240871' => 'keratin associated protein 4-7',
	'ENSMUSG00000044649' => 'keratin associated protein 4-2',
	'ENSMUSG00000045109' => 'keratin associated protein 4-7',
	'ENSMUSG00000078130' => 'predicted gene 11555',
	'ENSMUSG00000063251' => 'keratin associated protein 4-1',
	'ENSMUSG00000069718' => 'predicted gene 11563'
)
$gene_name_arr = array(
	'ENSG00000198090' => 'KRTAP4-6',
	'ENSG00000198271' => 'KRTAP4-5',
	'ENSG00000204880' => 'KRTAP4-8',
	'ENSG00000241241' => 'KRTAP4-16P',
	'ENSG00000212721' => 'KRTAP4-11',
	'ENSG00000213416' => 'KRTAP4-12',
	'ENSG00000212722' => 'KRTAP4-9',
	'ENSG00000240871' => 'KRTAP4-7',
	'ENSMUSG00000044649' => 'Krtap4-2',
	'ENSMUSG00000045109' => 'Krtap4-7',
	'ENSMUSG00000078130' => 'Gm11555',
	'ENSMUSG00000063251' => 'Krtap4-1',
	'ENSMUSG00000069718' => 'Gm11563'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0001',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41139433',
			'seq_end' => '41149802',
			'region_length' => '10369',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000198090-ENSG00000198271'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0002',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41096981',
			'seq_end' => '41102209',
			'region_length' => '5228',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000204880-ENSG00000241241'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0003',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41117181',
			'seq_end' => '41124167',
			'region_length' => '6986',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000212721-ENSG00000213416'
		)
	),
	(int) 3 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0004',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41105332',
			'seq_end' => '41118360',
			'region_length' => '13028',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000212722-ENSG00000212721'
		)
	),
	(int) 4 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0005',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41123091',
			'seq_end' => '41140487',
			'region_length' => '17396',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000213416-ENSG00000198090'
		)
	),
	(int) 5 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0006',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41084150',
			'seq_end' => '41106067',
			'region_length' => '21917',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000240871-ENSG00000240871'
		)
	),
	(int) 6 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0007',
			'tax_id' => '9606',
			'chromosome' => '17',
			'seq_start' => '41101502',
			'seq_end' => '41106488',
			'region_length' => '4986',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000241241-ENSG00000212722'
		)
	),
	(int) 7 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0008',
			'tax_id' => '10090',
			'chromosome' => '11',
			'seq_start' => '99634111',
			'seq_end' => '99644089',
			'region_length' => '9978',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000044649-ENSMUSG00000045109'
		)
	),
	(int) 8 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_0009',
			'tax_id' => '10090',
			'chromosome' => '11',
			'seq_start' => '99643106',
			'seq_end' => '99650236',
			'region_length' => '7130',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000045109-ENSMUSG00000078130'
		)
	),
	(int) 9 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_000A',
			'tax_id' => '10090',
			'chromosome' => '11',
			'seq_start' => '99627224',
			'seq_end' => '99635084',
			'region_length' => '7860',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000063251-ENSMUSG00000044649'
		)
	),
	(int) 10 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005PE_000B',
			'tax_id' => '10090',
			'chromosome' => '11',
			'seq_start' => '99649599',
			'seq_end' => '99658960',
			'region_length' => '9361',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000078130-ENSMUSG00000069718'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Bladder',
	(int) 3 => 'Brain',
	(int) 6 => 'Heart',
	(int) 8 => 'Lung',
	(int) 13 => 'Muscle',
	(int) 21 => 'Ovary',
	(int) 25 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 39
$longest_tissue_len = (int) 7
$transcript_data = array(
	'ENST00000345847' => array(
		'start' => '41139433',
		'end' => '41140487',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-6-001'
	),
	'ENST00000343246' => array(
		'start' => '41148924',
		'end' => '41149802',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-5-001'
	),
	'ENST00000318329' => array(
		'start' => '41097527',
		'end' => '41098084',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-8-201'
	),
	'ENST00000333822' => array(
		'start' => '41096981',
		'end' => '41098141',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-8-001'
	),
	'ENST00000440582' => array(
		'start' => '41101502',
		'end' => '41102209',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-16P-001'
	),
	'ENST00000391413' => array(
		'start' => '41117181',
		'end' => '41118360',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-11-001'
	),
	'ENST00000394014' => array(
		'start' => '41123091',
		'end' => '41124167',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-12-001'
	),
	'ENST00000391415' => array(
		'start' => '41105332',
		'end' => '41106488',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-9-001'
	),
	'ENST00000617453' => array(
		'start' => '41105389',
		'end' => '41106021',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-9-201'
	),
	'ENST00000391417' => array(
		'start' => '41084150',
		'end' => '41085141',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-7-001'
	),
	'ENST00000612231' => array(
		'start' => '41084181',
		'end' => '41106067',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-7-201'
	),
	'ENST00000621138' => array(
		'start' => '41084207',
		'end' => '41084674',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'KRTAP4-7-202'
	),
	'ENSMUST00000058987' => array(
		'start' => '99634111',
		'end' => '99635084',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Krtap4-2-001'
	),
	'ENSMUST00000055121' => array(
		'start' => '99643106',
		'end' => '99644089',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Krtap4-7-001'
	),
	'ENSMUST00000073126' => array(
		'start' => '99649660',
		'end' => '99650181',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Gm11555-201'
	),
	'ENSMUST00000104929' => array(
		'start' => '99649599',
		'end' => '99650236',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Gm11555-001'
	),
	'ENSMUST00000081007' => array(
		'start' => '99627224',
		'end' => '99628238',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Krtap4-1-001'
	),
	'ENSMUST00000092695' => array(
		'start' => '99657949',
		'end' => '99658960',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Gm11563-001'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0005PE_0003' => array(
		'genes_in_region' => array(
			'ENSG00000212721' => array(
				[maximum depth reached]
			),
			'ENSG00000213416' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Heart'
		)
	),
	'CIL_0005PE_0004' => array(
		'genes_in_region' => array(
			'ENSG00000212721' => array(
				[maximum depth reached]
			),
			'ENSG00000240871' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Lung',
			(int) 2 => 'Brain'
		)
	),
	'CIL_0005PE_0005' => array(
		'genes_in_region' => array(
			'ENSG00000213416' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Heart'
		)
	),
	'CIL_0005PE_0006' => array(
		'genes_in_region' => array(
			'ENSG00000240871' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0005PE_0007' => array(
		'genes_in_region' => array(
			'ENSG00000240871' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Lung',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0005PE_0008' => array(
		'genes_in_region' => array(
			'ENSMUSG00000044649' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000045109' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Lung',
			(int) 2 => 'Muscle',
			(int) 3 => 'Ovary',
			(int) 4 => 'Muscle'
		)
	),
	'CIL_0005PE_0009' => array(
		'genes_in_region' => array(
			'ENSMUSG00000045109' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000078130' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Muscle',
			(int) 1 => 'Muscle'
		)
	),
	'CIL_0005PE_000A' => array(
		'genes_in_region' => array(
			'ENSMUSG00000044649' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000063251' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Lung',
			(int) 2 => 'Muscle',
			(int) 3 => 'Ovary',
			(int) 4 => 'Bladder',
			(int) 5 => 'Muscle',
			(int) 6 => 'Testis'
		)
	),
	'CIL_0005PE_000B' => array(
		'genes_in_region' => array(
			'ENSMUSG00000069718' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000078130' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Muscle',
			(int) 1 => 'Muscle'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0005PE_0002',
		'tax_id' => '9606',
		'chromosome' => '17',
		'seq_start' => '41096981',
		'seq_end' => '41102209',
		'region_length' => '5228',
		'region_type' => 'CGP',
		'el_id' => 'ENSG00000204880-ENSG00000241241'
	)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Source ID		Type	Tax ID	Position
ENSG00000204880-ENSG00000241241		CGP	9606	17:41096981-41102209
Gene		Transcript	Position	Biotype

CIL_0005PE_0003 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSG00000212721-ENSG00000213416	CGP	9606	17:41117181-41124167
Gene	Transcript	Position	Biotype
ENSG00000212721 (KRTAP4-11) keratin associated protein 4-11	ENST00000391413 (KRTAP4-11-001)	41117181-41118360	protein_coding
ENSG00000213416 (KRTAP4-12) keratin associated protein 4-12	ENST00000394014 (KRTAP4-12-001)	41123091-41124167	protein_coding

CIL_0005PE_0004 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSG00000212722-ENSG00000212721	CGP	9606	17:41105332-41118360
Gene	Transcript	Position	Biotype
ENSG00000212721 (KRTAP4-11) keratin associated protein 4-11	ENST00000391413 (KRTAP4-11-001)	41117181-41118360	protein_coding
ENSG00000240871 (KRTAP4-7) keratin associated protein 4-7	ENST00000391417 (KRTAP4-7-001)	41084150-41085141	protein_coding
	ENST00000612231 (KRTAP4-7-201)	41084181-41106067	protein_coding
	ENST00000621138 (KRTAP4-7-202)	41084207-41084674	protein_coding

CIL_0005PE_0005 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSG00000213416-ENSG00000198090	CGP	9606	17:41123091-41140487
Gene	Transcript	Position	Biotype
ENSG00000213416 (KRTAP4-12) keratin associated protein 4-12	ENST00000394014 (KRTAP4-12-001)	41123091-41124167	protein_coding

CIL_0005PE_0006 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSG00000240871-ENSG00000240871	CGP	9606	17:41084150-41106067
Gene	Transcript	Position	Biotype
ENSG00000240871 (KRTAP4-7) keratin associated protein 4-7	ENST00000391417 (KRTAP4-7-001)	41084150-41085141	protein_coding
	ENST00000612231 (KRTAP4-7-201)	41084181-41106067	protein_coding
	ENST00000621138 (KRTAP4-7-202)	41084207-41084674	protein_coding

CIL_0005PE_0007 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSG00000241241-ENSG00000212722	CGP	9606	17:41101502-41106488
Gene	Transcript	Position	Biotype
ENSG00000240871 (KRTAP4-7) keratin associated protein 4-7	ENST00000391417 (KRTAP4-7-001)	41084150-41085141	protein_coding
	ENST00000612231 (KRTAP4-7-201)	41084181-41106067	protein_coding
	ENST00000621138 (KRTAP4-7-202)	41084207-41084674	protein_coding

CIL_0005PE_0008 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSMUSG00000044649-ENSMUSG00000045109	CGP	10090	11:99634111-99644089
Gene	Transcript	Position	Biotype
ENSMUSG00000044649 (Krtap4-2) keratin associated protein 4-2	ENSMUST00000058987 (Krtap4-2-001)	99634111-99635084	protein_coding
ENSMUSG00000045109 (Krtap4-7) keratin associated protein 4-7	ENSMUST00000055121 (Krtap4-7-001)	99643106-99644089	protein_coding

CIL_0005PE_0009 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSMUSG00000045109-ENSMUSG00000078130	CGP	10090	11:99643106-99650236
Gene	Transcript	Position	Biotype
ENSMUSG00000045109 (Krtap4-7) keratin associated protein 4-7	ENSMUST00000055121 (Krtap4-7-001)	99643106-99644089	protein_coding
ENSMUSG00000078130 (Gm11555) predicted gene 11555	ENSMUST00000073126 (Gm11555-201)	99649660-99650181	protein_coding
ENSMUSG00000078130 (Gm11555) predicted gene 11555	ENSMUST00000104929 (Gm11555-001)	99649599-99650236	protein_coding

CIL_0005PE_000A (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSMUSG00000063251-ENSMUSG00000044649	CGP	10090	11:99627224-99635084
Gene	Transcript	Position	Biotype
ENSMUSG00000044649 (Krtap4-2) keratin associated protein 4-2	ENSMUST00000058987 (Krtap4-2-001)	99634111-99635084	protein_coding
ENSMUSG00000063251 (Krtap4-1) keratin associated protein 4-1	ENSMUST00000081007 (Krtap4-1-001)	99627224-99628238	protein_coding

CIL_0005PE_000B (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSMUSG00000078130-ENSMUSG00000069718	CGP	10090	11:99649599-99658960
Gene	Transcript	Position	Biotype
ENSMUSG00000069718 (Gm11563) predicted gene 11563	ENSMUST00000092695 (Gm11563-001)	99657949-99658960	protein_coding
ENSMUSG00000078130 (Gm11555) predicted gene 11555	ENSMUST00000073126 (Gm11555-201)	99649660-99650181	protein_coding
ENSMUSG00000078130 (Gm11555) predicted gene 11555	ENSMUST00000104929 (Gm11555-001)	99649599-99650236	protein_coding

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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