C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005RA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000079182-ENSDARG00000032553 CGP 7955 17:9169156-9801699
GeneTranscriptPositionBiotype
ENSDARG00000032553 (egln3)
egl nine homolog 3 (C. elegans) 		ENSDART00000149640 (egln3-001) 9776820-9794947 protein_coding
ENSDART00000150063 (egln3-002) 9780876-9801699 protein_coding
ENSDARG00000079182 (NPAS3)
neuronal PAS domain protein 3 		ENSDART00000007777 (NPAS3-201) 9169156-9717503 protein_coding
ENSDARG00000097974 (si:ch211-172e9.1)
si:ch211-172e9.1 		ENSDART00000153650 (si:ch211-172e9.1-001) 9169606-9171368 lincRNA
CIL_0005RA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000151322-ENSG00000129521 CGP 9606 14:32934933-34462774
GeneTranscriptPositionBiotype
ENSG00000129521 (EGLN3)
egl-9 family hypoxia-inducible factor 3 		ENST00000250457 (EGLN3-001) 33924231-33951081 protein_coding
ENST00000464521 (EGLN3-003) 34126253-34169766 processed_transcript
ENST00000487915 (EGLN3-006) 33929099-34222877 protein_coding
ENST00000546681 (EGLN3-009) 34096163-34227814 processed_transcript
ENST00000547327 (EGLN3-005) 33948233-33951081 protein_coding
ENST00000548285 (EGLN3-002) 34092317-34222953 processed_transcript
ENST00000550114 (EGLN3-010) 33985153-34018655 processed_transcript
ENST00000551935 (EGLN3-011) 33985381-34462774 processed_transcript
ENST00000553215 (EGLN3-004) 33925399-33950826 protein_coding
ENST00000556785 (EGLN3-013) 33925511-33931336 retained_intron
ENST00000557521 (EGLN3-012) 34127029-34130044 processed_transcript
ENSG00000151322 (NPAS3)
neuronal PAS domain protein 3 		ENST00000346562 (NPAS3-001) 32939243-33804176 protein_coding
ENST00000356141 (NPAS3-004) 32939317-33801109 protein_coding
ENST00000357798 (NPAS3-010) 32939317-33801109 protein_coding
ENST00000546849 (NPAS3-013) 33215312-33612580 protein_coding
ENST00000547068 (NPAS3-008) 33213678-33681042 protein_coding
ENST00000548645 (NPAS3-006) 32939272-33801278 protein_coding
ENST00000549770 (NPAS3-011) 33215182-33560414 retained_intron
ENST00000550662 (NPAS3-014) 33608487-33612589 processed_transcript
ENST00000551008 (NPAS3-009) 33215213-33681042 protein_coding
ENST00000551492 (NPAS3-005) 32934933-33801109 protein_coding
ENST00000551634 (NPAS3-007) 32934933-33801103 protein_coding
ENST00000552696 (NPAS3-012) 33560185-33585979 nonsense_mediated_decay
ENST00000552874 (NPAS3-015) 33735241-33780871 protein_coding
ENSG00000165389 (SPTSSA)
serine palmitoyltransferase, small subunit A 		ENST00000298130 (SPTSSA-001) 34432789-34462356 protein_coding
ENSG00000223593 (AL356806.3)
 ENST00000422524 (AL356806.3-001) 34416687-34417602 processed_pseudogene
ENSG00000258897 (EGLN3-AS1)
EGLN3 antisense RNA 1 		ENST00000555922 (EGLN3-AS1-001) 34040097-34059300 antisense
ENSG00000265244 (AL358340.1)
 ENST00000583762 (AL358340.1-201) 33977310-33977391 miRNA
ENSG00000276444 (AL139296.1)
 ENST00000613805 (AL139296.1-201) 33200164-33200260 miRNA
CIL_0005RA_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021010-ENSMUSG00000035105 CGP 10090 12:53248677-54203860
GeneTranscriptPositionBiotype
ENSMUSG00000021010 (Npas3)
neuronal PAS domain protein 3 		ENSMUST00000101432 (Npas3-201) 53248677-54072175 protein_coding
ENSMUSG00000035105 (Egln3)
egl-9 family hypoxia-inducible factor 3 		ENSMUST00000039516 (Egln3-001) 54178981-54203860 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005RA_0001ENSDARG00000032553ENSDART00000149640ENSDART00000150063ENSDARG00000079182ENSDART00000007777ENSDARG00000097974ENSDART00000153650CIL_0005RA_0002ENSG00000129521ENST00000250457ENST00000464521ENST00000487915ENST00000546681ENST00000547327ENST00000548285ENST00000550114ENST00000551935ENST00000553215ENST00000556785ENST00000557521ENSG00000151322ENST00000346562ENST00000356141ENST00000357798ENST00000546849ENST00000547068ENST00000548645ENST00000549770ENST00000550662ENST00000551008ENST00000551492ENST00000551634ENST00000552696ENST00000552874ENSG00000165389ENST00000298130ENSG00000223593ENST00000422524ENSG00000258897ENST00000555922ENSG00000265244ENST00000583762ENSG00000276444ENST00000613805CIL_0005RA_0003ENSMUSG00000021010ENSMUST00000101432ENSMUSG00000035105ENSMUST00000039516
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005RA_0001ENSDARG00000032553ENSDART00000149640ENSDART00000150063ENSDARG00000079182ENSDART00000007777ENSDARG00000097974ENSDART00000153650CIL_0005RA_0002ENSG00000129521ENST00000250457ENST00000547327ENST00000553215ENST00000556785ENSG00000151322ENST00000346562ENST00000356141ENST00000357798ENST00000546849ENST00000547068ENST00000548645ENST00000549770ENST00000551008ENST00000551634ENST00000552874ENSG00000165389ENST00000298130ENSG00000223593ENST00000422524ENSG00000258897ENST00000555922ENSG00000265244ENST00000583762ENSG00000276444ENST00000613805CIL_0005RA_0003ENSMUSG00000021010ENSMUST00000101432ENSMUSG00000035105ENSMUST00000039516
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000032553 ENSDART00000149640 N/A N/A N/A 1.623±0.27 N/A N/A 14.166±7.95 21.379±0.00 1.304±0.00 N/A 4.418±0.00 N/A N/A N/A
ENSDART00000150063 N/A N/A N/A 0.316±0.00 N/A N/A 0.586±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000079182 ENSDART00000007777 N/A N/A N/A 9.005±2.18 N/A N/A 0.329±0.16 0.184±0.07 0.098±0.00 N/A 0.462±0.00 N/A N/A N/A
ENSDARG00000097974 ENSDART00000153650 N/A N/A N/A 0.999±0.52 N/A N/A 0.418±0.21 3.345±0.73 N/A N/A 0.335±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000129521 ENST00000250457 2.533±0.00 4.448±0.00 1.312±0.00 4.335±1.06 1.301±0.71 2.483±1.19 9.990±6.80 0.730±0.48 3.359±3.27 0.938±0.12 1.248±0.66 2.420±1.19 10.813±4.56 0.997±0.63
ENST00000464521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546681 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547327 0.524±0.00 N/A 0.392±0.00 0.792±0.00 0.371±0.00 0.953±0.44 1.427±0.00 N/A 2.807±0.00 0.979±0.56 N/A 1.104±0.90 2.521±1.20 0.101±0.00
ENST00000548285 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550114 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551935 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553215 3.164±0.00 5.663±0.00 N/A 9.883±0.00 0.945±0.00 11.468±0.00 24.557±0.00 3.393±0.00 0.363±0.00 4.712±0.00 4.469±0.00 1.808±0.64 N/A 2.099±1.88
ENST00000556785 N/A N/A N/A 4.422±0.00 1.444±0.00 4.303±0.00 4.937±0.00 N/A 3.703±3.61 2.590±0.00 0.415±0.00 N/A N/A N/A
ENST00000557521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000151322 ENST00000346562 0.177±0.00 N/A 0.147±0.00 1.723±0.05 N/A 0.127±0.00 N/A N/A 0.068±0.04 0.164±0.00 0.046±0.00 0.132±0.12 N/A 0.226±0.00
ENST00000356141 N/A N/A N/A 1.951±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.225±0.00
ENST00000357798 N/A N/A N/A N/A N/A N/A 0.039±0.00 N/A N/A N/A N/A 0.103±0.00 N/A 0.187±0.00
ENST00000546849 N/A N/A N/A N/A N/A N/A N/A 0.083±0.00 N/A N/A N/A N/A N/A N/A
ENST00000547068 N/A N/A 0.231±0.00 N/A 0.132±0.00 N/A N/A N/A N/A 0.054±0.00 0.015±0.00 N/A N/A N/A
ENST00000548645 N/A N/A N/A N/A 0.441±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549770 N/A N/A 1.077±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.064±0.00 N/A N/A
ENST00000550662 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551008 N/A N/A N/A N/A 0.274±0.00 N/A N/A N/A N/A N/A N/A 0.245±0.00 N/A N/A
ENST00000551492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551634 N/A N/A N/A N/A N/A N/A N/A 0.104±0.00 N/A N/A 0.097±0.00 0.010±0.00 0.413±0.00 0.248±0.00
ENST00000552696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.033±0.00 N/A N/A
ENSG00000165389 ENST00000298130 8.705±0.00 6.352±0.00 1.068±0.00 5.583±4.01 6.542±3.67 10.117±5.13 3.403±2.34 8.208±4.42 6.263±3.10 11.227±4.54 2.593±0.67 14.857±3.55 11.807±3.80 5.328±4.10
ENSG00000223593 ENST00000422524 N/A N/A N/A 0.032±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.018±0.00 N/A
ENSG00000258897 ENST00000555922 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.649±0.00 N/A
ENSG00000265244 ENST00000583762 N/A 0.534±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000276444 ENST00000613805 N/A N/A N/A N/A N/A N/A 0.213±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021010 ENSMUST00000101432 0.131±0.18 0.550±0.22 0.058±0.00 9.602±8.15 0.222±0.09 0.274±0.05 0.031±0.02 0.045±0.02 0.045±0.03 0.042±0.02 0.016±0.01 0.415±0.17 0.043±0.03 0.486±0.05
ENSMUSG00000035105 ENSMUST00000039516 2.628±0.22 2.422±0.96 17.352±3.53 2.430±0.45 3.631±1.93 14.273±1.35 18.729±5.58 3.435±0.08 7.004±6.03 3.098±1.85 9.294±1.55 3.038±1.37 2.278±0.45 0.222±0.11

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