C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005RP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000164796-ENSG00000104447 CGP 9606 8:112222928-115809673
GeneTranscriptPositionBiotype
ENSG00000104447 (TRPS1)
trichorhinophalangeal syndrome I 		ENST00000220888 (TRPS1-002) 115412549-115668702 protein_coding
ENST00000395713 (TRPS1-005) 115619747-115661678 protein_coding
ENST00000395715 (TRPS1-001) 115408496-115669001 protein_coding
ENST00000422939 (TRPS1-004) 115619913-115809673 protein_coding
ENST00000451156 (TRPS1-003) 115623611-115668294 protein_coding
ENST00000517323 (TRPS1-008) 115587001-115667981 protein_coding
ENST00000518018 (TRPS1-011) 115414429-115492221 protein_coding
ENST00000519076 (TRPS1-009) 115413814-115620070 protein_coding
ENST00000519674 (TRPS1-007) 115515190-115668903 protein_coding
ENST00000519815 (TRPS1-010) 115619774-115669483 protein_coding
ENST00000520276 (TRPS1-006) 115413922-115668007 protein_coding
ENSG00000164796 (CSMD3)
CUB and Sushi multiple domains 3 		ENST00000297405 (CSMD3-001) 112222928-113437099 protein_coding
ENST00000339701 (CSMD3-007) 112222932-112690042 protein_coding
ENST00000343508 (CSMD3-006) 112222928-113377153 protein_coding
ENST00000455883 (CSMD3-002) 112222932-113436883 protein_coding
ENST00000462254 (CSMD3-009) 113098686-113173900 retained_intron
ENST00000492692 (CSMD3-008) 112310225-112337575 retained_intron
ENST00000493303 (CSMD3-005) 113309205-113436790 retained_intron
ENST00000497026 (CSMD3-003) 113018776-113436939 retained_intron
ENST00000519485 (CSMD3-010) 113098525-113173820 processed_transcript
ENST00000534172 (CSMD3-011) 112224048-112255928 retained_intron
ENSG00000227170 (AF178030.2)
 ENST00000415088 (AF178030.2-001) 115509602-115511325 antisense
ENSG00000253499 (RP11-393K19.1)
 ENST00000518851 (RP11-393K19.1-001) 114318400-114318911 processed_pseudogene
ENSG00000253756 (CARSP2)
cysteinyl-tRNA synthetase pseudogene 2 		ENST00000520688 (CARSP2-001) 114791653-114791929 processed_pseudogene
ENSG00000254339 (RP11-267L5.1)
 ENST00000507929 (RP11-267L5.1-001) 114282072-114295624 lincRNA
ENST00000519248 (RP11-267L5.1-002) 114282136-114287996 lincRNA
ENST00000520543 (RP11-267L5.1-004) 114282073-114295839 lincRNA
ENST00000521523 (RP11-267L5.1-005) 114282067-114295807 lincRNA
ENST00000523682 (RP11-267L5.1-003) 114282069-114295813 lincRNA
CIL_0005RP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022311-ENSMUSG00000038679 CGP 10090 15:47580637-50890463
GeneTranscriptPositionBiotype
ENSMUSG00000022311 (Csmd3)
CUB and Sushi multiple domains 3 		ENSMUST00000100670 (Csmd3-201) 47580638-48791989 protein_coding
ENSMUST00000110261 (Csmd3-006) 47947897-47961468 retained_intron
ENSMUST00000160655 (Csmd3-002) 48285611-48791989 retained_intron
ENSMUST00000160658 (Csmd3-004) 47580637-48791933 protein_coding
ENSMUST00000160716 (Csmd3-003) 48254342-48791989 processed_transcript
ENSMUST00000161173 (Csmd3-008) 47629237-47634293 retained_intron
ENSMUST00000161653 (Csmd3-005) 47581723-48001621 protein_coding
ENSMUST00000162006 (Csmd3-007) 47581726-47615201 retained_intron
ENSMUST00000162830 (Csmd3-001) 47580722-48792063 protein_coding
ENSMUSG00000038679 (Trps1)
trichorhinophalangeal syndrome I (human) 		ENSMUST00000077935 (Trps1-201) 50660451-50890041 protein_coding
ENSMUST00000165201 (Trps1-001) 50654752-50889691 protein_coding
ENSMUST00000183421 (Trps1-006) 50819499-50827521 protein_coding
ENSMUST00000183757 (Trps1-003) 50658429-50889049 protein_coding
ENSMUST00000183997 (Trps1-004) 50660434-50889046 protein_coding
ENSMUST00000184458 (Trps1-002) 50658411-50889713 protein_coding
ENSMUST00000184885 (Trps1-005) 50660435-50882806 protein_coding
ENSMUST00000185183 (Trps1-007) 50846176-50890463 protein_coding
ENSMUSG00000089828 (Gm16300)
predicted gene 16300 		ENSMUST00000160031 (Gm16300-001) 47699714-47703827 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005RP_0001ENSG00000104447ENST00000220888ENST00000395713ENST00000395715ENST00000422939ENST00000451156ENST00000517323ENST00000518018ENST00000519076ENST00000519674ENST00000519815ENST00000520276ENSG00000164796ENST00000297405ENST00000339701ENST00000343508ENST00000455883ENST00000462254ENST00000492692ENST00000493303ENST00000497026ENST00000519485ENST00000534172ENSG00000227170ENST00000415088ENSG00000253499ENST00000518851ENSG00000253756ENST00000520688ENSG00000254339ENST00000507929ENST00000519248ENST00000520543ENST00000521523ENST00000523682CIL_0005RP_0002ENSMUSG00000022311ENSMUST00000100670ENSMUST00000110261ENSMUST00000160655ENSMUST00000160658ENSMUST00000160716ENSMUST00000161173ENSMUST00000161653ENSMUST00000162006ENSMUST00000162830ENSMUSG00000038679ENSMUST00000077935ENSMUST00000165201ENSMUST00000183421ENSMUST00000183757ENSMUST00000183997ENSMUST00000184458ENSMUST00000184885ENSMUST00000185183ENSMUSG00000089828ENSMUST00000160031
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005RP_0001ENSG00000104447ENST00000220888ENST00000395715ENST00000518018ENST00000519076ENST00000519674ENST00000520276ENSG00000164796ENST00000297405ENST00000339701ENST00000343508ENST00000455883ENST00000462254ENST00000492692ENST00000493303ENST00000497026ENST00000534172ENSG00000227170ENST00000415088ENSG00000253499ENST00000518851ENSG00000253756ENST00000520688ENSG00000254339ENST00000507929CIL_0005RP_0002ENSMUSG00000022311ENSMUST00000100670ENSMUST00000110261ENSMUST00000160655ENSMUST00000160658ENSMUST00000160716ENSMUST00000161173ENSMUST00000161653ENSMUST00000162006ENSMUST00000162830ENSMUSG00000038679ENSMUST00000077935ENSMUST00000165201ENSMUST00000183421ENSMUST00000183757ENSMUST00000183997ENSMUST00000184458ENSMUST00000184885ENSMUST00000185183ENSMUSG00000089828ENSMUST00000160031
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104447 ENST00000220888 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.498±0.00
ENST00000395713 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000395715 N/A 0.210±0.00 1.820±0.00 1.149±0.84 1.098±0.18 N/A 0.323±0.25 N/A 2.385±0.00 N/A N/A 0.881±0.52 0.099±0.00 0.560±0.00
ENST00000422939 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000451156 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.705±0.21 11.008±0.00
ENST00000519076 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.987±0.00
ENST00000519674 N/A N/A N/A 2.141±0.00 3.327±0.00 N/A N/A N/A N/A 3.681±0.00 0.698±0.00 N/A N/A N/A
ENST00000519815 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520276 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.875±0.00 1.156±0.00 0.696±0.00 0.132±0.00 2.028±0.00
ENSG00000164796 ENST00000297405 N/A N/A N/A 0.321±0.00 N/A N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A 0.149±0.00
ENST00000339701 0.004±0.00 N/A 0.011±0.00 N/A N/A N/A N/A N/A 0.002±0.00 0.029±0.00 N/A 0.014±0.00 N/A N/A
ENST00000343508 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.113±0.00 0.002±0.00 0.452±0.00
ENST00000455883 N/A N/A N/A 2.060±0.00 0.023±0.00 N/A N/A N/A N/A N/A N/A N/A 0.003±0.00 N/A
ENST00000462254 N/A N/A N/A N/A N/A N/A 0.570±0.00 N/A N/A 0.681±0.00 N/A N/A N/A 2.239±0.00
ENST00000492692 N/A 0.025±0.00 N/A N/A N/A N/A N/A N/A N/A 0.221±0.00 0.048±0.00 N/A N/A N/A
ENST00000493303 0.022±0.00 0.028±0.00 N/A N/A 0.016±0.00 0.026±0.00 0.011±0.00 0.012±0.00 N/A 0.019±0.00 0.134±0.00 0.002±0.00 0.006±0.00 N/A
ENST00000497026 N/A N/A N/A N/A N/A 0.040±0.00 N/A N/A 0.349±0.00 N/A N/A 0.229±0.00 0.026±0.00 N/A
ENST00000519485 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534172 N/A N/A N/A N/A N/A 0.018±0.00 N/A 0.018±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000227170 ENST00000415088 N/A N/A N/A 0.070±0.00 0.067±0.00 0.569±0.00 N/A 0.070±0.00 N/A N/A N/A N/A N/A 0.109±0.00
ENSG00000253499 ENST00000518851 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.079±0.00
ENSG00000253756 ENST00000520688 N/A N/A N/A N/A 1.700±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000254339 ENST00000507929 0.027±0.00 0.852±0.00 N/A 0.508±0.00 0.179±0.00 N/A 0.112±0.06 0.175±0.00 0.049±0.00 0.052±0.00 N/A 0.128±0.04 0.077±0.00 0.262±0.08
ENST00000519248 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520543 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521523 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022311 ENSMUST00000100670 N/A N/A N/A 0.198±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000110261 N/A N/A N/A N/A N/A 0.125±0.00 N/A N/A N/A N/A N/A 0.033±0.00 N/A 0.544±0.10
ENSMUST00000160655 N/A N/A N/A N/A N/A N/A N/A 0.016±0.00 0.040±0.00 N/A N/A N/A N/A N/A
ENSMUST00000160658 N/A N/A N/A 0.526±0.31 N/A N/A N/A N/A 0.002±0.00 N/A N/A 0.007±0.00 0.001±0.00 N/A
ENSMUST00000160716 0.019±0.00 N/A N/A 2.074±0.86 N/A N/A N/A N/A 0.023±0.00 0.029±0.00 N/A 0.147±0.07 0.013±0.01 N/A
ENSMUST00000161173 N/A N/A N/A N/A N/A N/A N/A N/A 0.026±0.00 N/A N/A 0.034±0.01 N/A N/A
ENSMUST00000161653 0.005±0.00 N/A N/A 0.605±0.00 N/A 0.012±0.00 N/A N/A 0.001±0.00 N/A 0.005±0.00 0.003±0.00 0.004±0.00 0.217±0.15
ENSMUST00000162006 N/A N/A N/A N/A N/A N/A N/A N/A 0.009±0.01 N/A N/A N/A 0.004±0.00 N/A
ENSMUST00000162830 N/A N/A 0.023±0.00 0.602±0.34 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000038679 ENSMUST00000077935 1.737±0.63 0.400±0.19 N/A 0.715±0.00 3.391±0.51 0.432±0.16 0.211±0.03 1.885±0.03 N/A 0.578±0.08 N/A 1.032±0.29 N/A 0.111±0.02
ENSMUST00000165201 2.921±0.83 0.515±0.22 2.012±0.53 0.904±0.31 3.413±1.14 0.645±0.20 0.235±0.10 0.983±0.40 0.103±0.07 1.291±0.02 0.249±0.25 1.424±0.91 0.268±0.22 0.065±0.00
ENSMUST00000183421 N/A N/A N/A N/A N/A N/A N/A N/A 0.043±0.00 N/A N/A N/A N/A N/A
ENSMUST00000183757 2.114±0.00 N/A N/A N/A 1.430±0.00 0.383±0.06 0.121±0.00 N/A N/A 0.411±0.06 N/A 1.772±0.71 N/A 0.127±0.00
ENSMUST00000183997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.950±0.00 N/A 0.090±0.00
ENSMUST00000184458 N/A N/A N/A N/A N/A N/A N/A N/A 0.052±0.01 N/A N/A 1.527±0.35 N/A 0.080±0.01
ENSMUST00000184885 N/A N/A N/A N/A N/A N/A N/A N/A 0.059±0.01 N/A N/A 1.359±0.43 N/A N/A
ENSMUST00000185183 N/A N/A N/A N/A N/A N/A N/A N/A 0.131±0.02 N/A N/A N/A N/A N/A
ENSMUSG00000089828 ENSMUST00000160031 0.489±0.23 0.118±0.03 0.195±0.15 0.434±0.27 0.622±0.26 0.370±0.26 0.261±0.09 0.254±0.05 0.097±0.09 0.762±0.21 0.018±0.01 0.395±0.17 0.078±0.03 0.778±0.12

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