C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005S5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000125046-ENSG00000182533 CGP 9606 3:8619400-8841808
GeneTranscriptPositionBiotype
ENSG00000070950 (RAD18)
RAD18 E3 ubiquitin protein ligase 		ENST00000264926 (RAD18-001) 8877076-8963502 protein_coding
ENST00000413832 (RAD18-007) 8941796-8963773 protein_coding
ENST00000415439 (RAD18-002) 8881264-8963431 nonsense_mediated_decay
ENST00000418463 (RAD18-010) 8941531-8963470 protein_coding
ENST00000421052 (RAD18-009) 8941551-8963470 protein_coding
ENST00000427329 (RAD18-008) 8775402-8902456 protein_coding
ENST00000429790 (RAD18-003) 8890109-8902398 protein_coding
ENST00000469793 (RAD18-005) 8946952-8963443 retained_intron
ENST00000473069 (RAD18-004) 8881420-8912469 retained_intron
ENST00000495087 (RAD18-006) 8941513-8963502 processed_transcript
ENSG00000180914 (OXTR)
oxytocin receptor 		ENST00000316793 (OXTR-001) 8750408-8769617 protein_coding
ENST00000431493 (OXTR-002) 8768058-8769628 protein_coding
ENST00000449615 (OXTR-004) 8767912-8768677 protein_coding
ENST00000474615 (OXTR-003) 8768443-8769613 retained_intron
ENSG00000182533 (CAV3)
caveolin 3 		ENST00000343849 (CAV3-001) 8733800-8746765 protein_coding
ENST00000397368 (CAV3-002) 8733866-8746756 protein_coding
ENST00000472766 (CAV3-003) 8733836-8841808 processed_transcript
ENSG00000215160 (OR7E122P)
olfactory receptor, family 7, subfamily E, member 122 pseudogene 		ENST00000383606 (OR7E122P-001) 8688143-8689159 unprocessed_pseudogene
CIL_0005S5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034387-ENSMUSG00000062694 CGP 10090 6:112359324-112472871
GeneTranscriptPositionBiotype
ENSMUSG00000034387 (Ssu2)
ssu-2 homolog (C. elegans) 		ENSMUST00000060847 (Ssu2-001) 112359324-112388023 protein_coding
ENSMUST00000123254 (Ssu2-003) 112369275-112375720 retained_intron
ENSMUST00000143134 (Ssu2-002) 112368740-112377727 processed_transcript
ENSMUSG00000062694 (Cav3)
caveolin 3 		ENSMUST00000075477 (Cav3-201) 112459501-112472871 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005S5_0001ENSG00000070950ENST00000264926ENST00000413832ENST00000415439ENST00000418463ENST00000421052ENST00000427329ENST00000429790ENST00000469793ENST00000473069ENST00000495087ENSG00000180914ENST00000316793ENST00000431493ENST00000449615ENST00000474615ENSG00000182533ENST00000343849ENST00000397368ENST00000472766ENSG00000215160ENST00000383606CIL_0005S5_0002ENSMUSG00000034387ENSMUST00000060847ENSMUST00000123254ENSMUST00000143134ENSMUSG00000062694ENSMUST00000075477
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005S5_0001ENSG00000070950ENST00000264926ENST00000415439ENST00000421052ENST00000495087ENSG00000180914ENST00000316793ENSG00000182533ENST00000343849ENST00000397368ENST00000472766ENSG00000215160ENST00000383606CIL_0005S5_0002ENSMUSG00000034387ENSMUST00000060847ENSMUST00000123254ENSMUST00000143134ENSMUSG00000062694ENSMUST00000075477
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000070950 ENST00000264926 N/A 0.825±0.00 N/A 0.484±0.18 0.781±0.30 0.170±0.00 0.277±0.00 0.527±0.44 0.421±0.24 0.382±0.00 N/A 1.211±0.09 0.783±0.10 1.107±0.12
ENST00000413832 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000415439 0.950±0.00 N/A 0.743±0.00 1.285±0.00 1.932±0.00 1.065±0.60 0.310±0.00 N/A 0.318±0.00 1.353±0.00 N/A 1.407±0.60 0.921±0.52 1.983±0.95
ENST00000418463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000421052 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.089±0.00 N/A N/A
ENST00000427329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469793 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473069 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495087 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.259±0.00 N/A N/A N/A
ENSG00000180914 ENST00000316793 N/A N/A 0.011±0.00 0.493±0.00 3.804±2.36 0.048±0.00 0.019±0.00 0.010±0.00 0.013±0.00 N/A N/A 0.756±0.31 0.858±0.42 N/A
ENST00000431493 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449615 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474615 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000182533 ENST00000343849 N/A N/A N/A N/A 2.332±0.00 N/A 5.379±3.42 N/A N/A 0.313±0.16 19.633±2.17 0.040±0.01 N/A 0.626±0.39
ENST00000397368 N/A N/A N/A 0.017±0.00 0.265±0.14 0.252±0.00 N/A N/A N/A 0.309±0.00 6.619±0.00 N/A 0.072±0.04 N/A
ENST00000472766 N/A N/A N/A 0.038±0.00 0.333±0.00 N/A N/A N/A 0.121±0.00 N/A N/A N/A 0.059±0.00 N/A
ENSG00000215160 ENST00000383606 N/A N/A N/A 0.016±0.00 0.044±0.00 N/A N/A N/A N/A N/A N/A 0.039±0.00 N/A 0.342±0.17
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034387 ENSMUST00000060847 0.489±0.04 N/A 0.353±0.00 0.012±0.00 0.399±0.23 0.990±0.65 0.289±0.03 0.553±0.07 0.014±0.00 0.249±0.09 0.222±0.07 0.971±0.27 0.169±0.13 0.436±0.12
ENSMUST00000123254 1.349±0.77 21.754±7.03 0.247±0.00 0.092±0.04 0.575±0.15 2.114±0.52 1.093±0.30 0.849±0.18 0.041±0.00 0.414±0.21 0.209±0.19 4.405±1.75 0.472±0.38 0.657±0.34
ENSMUST00000143134 0.377±0.00 6.749±2.31 0.102±0.00 0.036±0.00 0.108±0.00 0.798±0.17 0.348±0.00 0.464±0.02 0.008±0.00 0.268±0.00 0.175±0.04 6.834±3.43 0.232±0.19 0.048±0.00
ENSMUSG00000062694 ENSMUST00000075477 0.279±0.15 0.081±0.03 10.858±0.81 0.134±0.09 6.226±6.75 4.024±0.72 58.227±4.82 0.430±0.18 0.161±0.29 6.046±3.11 44.318±3.88 0.877±0.51 0.158±0.10 0.095±0.03

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