C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005SO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100353-ENSG00000166862 CGP 9606 22:36510850-36703558
GeneTranscriptPositionBiotype
ENSG00000100353 (EIF3D)
eukaryotic translation initiation factor 3, subunit D 		ENST00000216190 (EIF3D-001) 36510850-36529436 protein_coding
ENST00000402116 (EIF3D-007) 36523916-36528942 protein_coding
ENST00000405442 (EIF3D-002) 36510899-36528897 protein_coding
ENST00000426531 (EIF3D-009) 36511577-36516931 retained_intron
ENST00000432675 (EIF3D-003) 36523115-36529184 protein_coding
ENST00000455547 (EIF3D-005) 36518813-36529166 protein_coding
ENST00000457241 (EIF3D-006) 36520633-36529077 protein_coding
ENST00000458572 (EIF3D-010) 36511701-36519501 nonsense_mediated_decay
ENST00000462641 (EIF3D-012) 36510868-36512929 retained_intron
ENST00000462794 (EIF3D-008) 36516063-36516923 retained_intron
ENST00000478547 (EIF3D-011) 36510856-36511641 processed_transcript
ENST00000496875 (EIF3D-004) 36524695-36529173 retained_intron
ENSG00000166862 (CACNG2)
calcium channel, voltage-dependent, gamma subunit 2 		ENST00000300105 (CACNG2-001) 36563921-36703558 protein_coding
ENST00000480002 (CACNG2-002) 36584489-36585454 processed_transcript
ENSG00000188078 (RP5-1119A7.11)
 ENST00000339367 (RP5-1119A7.11-001) 36536656-36537604 unprocessed_pseudogene
ENSG00000261675 (RP5-1119A7.17)
 ENST00000562756 (RP5-1119A7.17-001) 36560870-36562915 sense_overlapping

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_0005SO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000016554-ENSMUSG00000019146 CGP 10090 15:77958998-78120028
GeneTranscriptPositionBiotype
ENSMUSG00000016554 (Eif3d)
eukaryotic translation initiation factor 3, subunit D 		ENSMUST00000100484 (Eif3d-201) 77958998-77970824 protein_coding
ENSMUSG00000019146 (Cacng2)
calcium channel, voltage-dependent, gamma subunit 2 		ENSMUST00000019290 (Cacng2-001) 77991748-78120028 protein_coding
ENSMUSG00000092375 (A730060N03Rik)
RIKEN cDNA A730060N03 gene 		ENSMUST00000174277 (A730060N03Rik-001) 78119706-78144142 processed_transcript
ENSMUSG00000097057 (Gm17638)
predicted gene, 17638 		ENSMUST00000181255 (Gm17638-201) 77961674-77967126 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005SO_0001ENSG00000100353ENST00000216190ENST00000402116ENST00000405442ENST00000426531ENST00000432675ENST00000455547ENST00000457241ENST00000458572ENST00000462641ENST00000462794ENST00000478547ENST00000496875ENSG00000166862ENST00000300105ENST00000480002ENSG00000188078ENST00000339367ENSG00000261675ENST00000562756CIL_0005SO_0002ENSMUSG00000016554ENSMUST00000100484ENSMUSG00000019146ENSMUST00000019290ENSMUSG00000092375ENSMUST00000174277ENSMUSG00000097057ENSMUST00000181255
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005SO_0001ENSG00000100353ENST00000216190ENST00000405442ENST00000426531ENST00000432675ENST00000455547ENST00000457241ENST00000458572ENST00000462641ENSG00000166862ENST00000300105ENST00000480002ENSG00000188078ENST00000339367ENSG00000261675ENST00000562756CIL_0005SO_0002ENSMUSG00000016554ENSMUST00000100484ENSMUSG00000019146ENSMUST00000019290ENSMUSG00000092375ENSMUST00000174277ENSMUSG00000097057ENSMUST00000181255
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100353 ENST00000216190 17.809±0.00 22.481±0.00 5.777±0.00 6.091±1.72 15.085±3.55 24.026±7.05 4.320±0.10 13.531±1.01 12.464±0.00 19.177±0.00 12.896±9.54 51.499±20.00 45.341±6.04 21.257±4.75
ENST00000402116 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000405442 44.581±0.00 53.985±0.00 N/A 15.745±0.00 33.831±0.00 50.071±0.00 24.355±0.00 23.471±0.00 16.460±0.00 48.357±0.00 26.551±23.92 43.852±4.66 40.213±8.30 51.974±0.00
ENST00000426531 N/A N/A N/A 11.053±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000432675 N/A N/A N/A N/A 6.403±0.00 N/A 3.713±0.00 N/A N/A 12.867±0.00 11.623±0.00 12.138±0.00 N/A N/A
ENST00000455547 N/A N/A N/A 7.124±0.00 N/A N/A N/A N/A 5.088±0.00 N/A N/A N/A N/A N/A
ENST00000457241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 73.605±0.00 85.931±0.00 62.268±0.00
ENST00000458572 24.697±0.00 36.098±0.00 N/A 7.852±0.00 30.567±0.00 N/A N/A 15.257±0.00 11.114±0.00 N/A 20.052±0.00 N/A N/A N/A
ENST00000462641 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.004±0.00 N/A N/A N/A
ENST00000462794 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478547 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496875 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000166862 ENST00000300105 0.053±0.00 N/A N/A 0.406±0.00 N/A N/A N/A N/A N/A 0.006±0.00 0.006±0.00 N/A N/A 0.091±0.01
ENST00000480002 N/A N/A N/A 0.094±0.00 0.067±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000188078 ENST00000339367 0.147±0.00 N/A N/A 0.062±0.00 N/A 0.053±0.00 0.100±0.00 0.113±0.00 0.049±0.00 N/A N/A N/A N/A N/A
ENSG00000261675 ENST00000562756 N/A N/A N/A 2.719±0.60 N/A 0.048±0.00 N/A N/A N/A N/A N/A N/A N/A 0.020±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000016554 ENSMUST00000100484 39.019±7.56 17.970±2.73 35.871±11.11 51.317±8.71 26.992±4.02 27.506±2.52 15.880±0.40 22.657±2.02 54.184±38.03 22.018±3.94 19.991±0.97 58.280±17.33 60.395±34.35 36.678±9.44
ENSMUSG00000019146 ENSMUST00000019290 N/A 0.121±0.04 0.003±0.00 6.571±4.86 N/A 0.011±0.00 0.008±0.00 0.010±0.00 0.007±0.01 0.012±0.00 0.007±0.00 0.011±0.01 0.003±0.00 0.030±0.01
ENSMUSG00000092375 ENSMUST00000174277 N/A 0.217±0.09 N/A N/A N/A N/A N/A 0.011±0.00 0.004±0.00 N/A 0.027±0.00 0.039±0.00 N/A 0.074±0.01
ENSMUSG00000097057 ENSMUST00000181255 N/A N/A N/A N/A 1.576±0.00 2.471±0.00 N/A 2.185±0.00 N/A N/A N/A 5.757±0.00 N/A N/A

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