C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005VO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000188282-ENSG00000180871 CGP 9606 2:218034960-218137253
GeneTranscriptPositionBiotype
ENSG00000180871 (CXCR2)
chemokine (C-X-C motif) receptor 2 		ENST00000318507 (CXCR2-001) 218126004-218137253 protein_coding
ENST00000415392 (CXCR2-007) 218125681-218135216 protein_coding
ENST00000418878 (CXCR2-006) 218130850-218134846 protein_coding
ENST00000428565 (CXCR2-005) 218129287-218135318 protein_coding
ENST00000449014 (CXCR2-003) 218125705-218134846 protein_coding
ENST00000453237 (CXCR2-002) 218125289-218135403 protein_coding
ENST00000454148 (CXCR2-004) 218126019-218135208 protein_coding
ENSG00000188282 (RUFY4)
RUN and FYVE domain containing 4 		ENST00000344321 (RUFY4-201) 218070496-218090580 protein_coding
ENST00000374155 (RUFY4-002) 218069255-218090580 protein_coding
ENST00000457754 (RUFY4-001) 218034988-218090581 nonsense_mediated_decay
ENST00000463618 (RUFY4-006) 218035069-218070514 processed_transcript
ENST00000463872 (RUFY4-009) 218072871-218075720 processed_transcript
ENST00000465568 (RUFY4-007) 218035096-218070838 processed_transcript
ENST00000472496 (RUFY4-005) 218069014-218070817 processed_transcript
ENST00000480164 (RUFY4-003) 218068986-218070623 processed_transcript
ENST00000495721 (RUFY4-008) 218070306-218072499 retained_intron
ENST00000497857 (RUFY4-004) 218034960-218068849 processed_transcript
ENSG00000229754 (CXCR2P1)
chemokine (C-X-C motif) receptor 2 pseudogene 1 		ENST00000439871 (CXCR2P1-002) 218059155-218065729 processed_transcript
ENST00000443392 (CXCR2P1-001) 218060339-218061412 transcribed_unprocessed_pseudogene
CIL_0005VO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000061815-ENSMUSG00000026180 CGP 10090 1:74125541-74161246
GeneTranscriptPositionBiotype
ENSMUSG00000026180 (Cxcr2)
chemokine (C-X-C motif) receptor 2 		ENSMUST00000027372 (Cxcr2-201) 74153989-74160610 protein_coding
ENSMUST00000106899 (Cxcr2-001) 74153991-74161246 protein_coding
ENSMUSG00000061815 (Rufy4)
RUN and FYVE domain containing 4 		ENSMUST00000080167 (Rufy4-001) 74125541-74148223 protein_coding
ENSMUST00000127134 (Rufy4-002) 74125579-74147773 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005VO_0001ENSG00000180871ENST00000318507ENST00000415392ENST00000418878ENST00000428565ENST00000449014ENST00000453237ENST00000454148ENSG00000188282ENST00000344321ENST00000374155ENST00000457754ENST00000463618ENST00000463872ENST00000465568ENST00000472496ENST00000480164ENST00000495721ENST00000497857ENSG00000229754ENST00000439871ENST00000443392CIL_0005VO_0002ENSMUSG00000026180ENSMUST00000027372ENSMUST00000106899ENSMUSG00000061815ENSMUST00000080167ENSMUST00000127134
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005VO_0001ENSG00000180871ENST00000318507ENST00000428565ENST00000449014ENST00000453237ENST00000454148ENSG00000188282ENST00000344321ENST00000374155ENST00000457754ENST00000463618ENST00000463872ENST00000472496ENST00000480164ENST00000495721ENSG00000229754ENST00000439871ENST00000443392CIL_0005VO_0002ENSMUSG00000026180ENSMUST00000027372ENSMUST00000106899ENSMUSG00000061815ENSMUST00000080167ENSMUST00000127134
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000180871 ENST00000318507 0.345±0.00 0.241±0.00 0.054±0.00 N/A 0.135±0.00 0.180±0.04 0.021±0.00 0.017±0.00 0.188±0.11 3.365±2.25 N/A 0.114±0.00 0.777±0.00 0.118±0.05
ENST00000415392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000418878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428565 N/A N/A N/A N/A N/A N/A 0.204±0.00 N/A 0.114±0.00 N/A N/A N/A N/A N/A
ENST00000449014 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.826±0.00 N/A N/A
ENST00000453237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.057±0.00
ENST00000454148 N/A N/A N/A N/A N/A N/A N/A N/A 0.125±0.00 N/A N/A N/A N/A N/A
ENSG00000188282 ENST00000344321 0.042±0.00 0.022±0.00 N/A N/A 0.020±0.00 N/A N/A 0.048±0.00 N/A N/A N/A 0.022±0.00 0.023±0.00 N/A
ENST00000374155 N/A N/A N/A 0.087±0.00 N/A N/A N/A N/A N/A N/A N/A 0.076±0.00 0.034±0.00 N/A
ENST00000457754 N/A N/A N/A N/A N/A N/A 0.007±0.00 N/A N/A 0.033±0.00 N/A N/A N/A N/A
ENST00000463618 N/A N/A N/A N/A 0.260±0.00 N/A N/A N/A N/A N/A N/A N/A 0.165±0.00 N/A
ENST00000463872 N/A N/A N/A N/A N/A 0.221±0.00 N/A N/A 0.025±0.00 N/A N/A 0.161±0.00 N/A 0.039±0.00
ENST00000465568 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472496 N/A 0.026±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480164 N/A N/A N/A N/A 0.146±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495721 N/A N/A N/A N/A N/A N/A 0.139±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000497857 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000229754 ENST00000439871 N/A 4.042±0.00 N/A N/A 0.277±0.17 0.118±0.00 0.037±0.00 0.516±0.50 0.657±0.59 0.323±0.31 0.056±0.00 0.098±0.05 0.329±0.15 0.034±0.00
ENST00000443392 N/A N/A N/A 0.035±0.00 N/A N/A N/A N/A N/A N/A 0.051±0.00 N/A N/A 0.036±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026180 ENSMUST00000027372 0.903±0.01 N/A N/A N/A 1.082±0.21 0.050±0.01 0.540±0.06 0.189±0.00 0.772±0.95 2.440±0.41 N/A 0.160±0.01 3.252±0.86 N/A
ENSMUST00000106899 0.242±0.18 0.055±0.02 0.040±0.01 0.190±0.14 0.528±0.31 0.103±0.07 0.173±0.09 0.143±0.07 0.612±0.70 0.762±0.18 0.079±0.09 0.240±0.10 4.913±3.13 0.109±0.03
ENSMUSG00000061815 ENSMUST00000080167 0.642±0.52 0.340±0.13 N/A 0.171±0.00 0.360±0.15 0.095±0.04 0.263±0.00 0.960±0.40 0.098±0.06 0.514±0.25 0.031±0.01 0.523±0.23 4.892±3.47 0.127±0.04
ENSMUST00000127134 0.413±0.34 0.117±0.04 N/A 0.140±0.04 0.310±0.21 N/A 0.180±0.01 0.321±0.07 0.029±0.02 0.444±0.08 0.039±0.02 0.451±0.18 1.741±0.42 0.177±0.18

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