C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005VU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000157036-ENSG00000183873 CGP 9606 3:38496127-38649673
GeneTranscriptPositionBiotype
ENSG00000157036 (EXOG)
endo/exonuclease (5'-3'), endonuclease G-like 		ENST00000287675 (EXOG-001) 38496272-38525951 protein_coding
ENST00000412107 (EXOG-003) 38496127-38524413 nonsense_mediated_decay
ENST00000422077 (EXOG-008) 38496345-38524699 protein_coding
ENST00000431472 (EXOG-007) 38496342-38524417 nonsense_mediated_decay
ENST00000436414 (EXOG-002) 38496272-38524868 nonsense_mediated_decay
ENST00000438992 (EXOG-004) 38496365-38524568 nonsense_mediated_decay
ENST00000443942 (EXOG-013) 38496340-38501502 nonsense_mediated_decay
ENST00000447573 (EXOG-009) 38496343-38524818 nonsense_mediated_decay
ENST00000450732 (EXOG-015) 38496485-38524060 nonsense_mediated_decay
ENST00000453767 (EXOG-016) 38496481-38523216 protein_coding
ENST00000454803 (EXOG-005) 38496345-38524950 nonsense_mediated_decay
ENST00000457367 (EXOG-006) 38496365-38525121 nonsense_mediated_decay
ENST00000470291 (EXOG-014) 38496492-38513851 nonsense_mediated_decay
ENST00000474071 (EXOG-010) 38496738-38542161 retained_intron
ENST00000483749 (EXOG-017) 38501162-38524246 retained_intron
ENST00000489813 (EXOG-012) 38496345-38498022 retained_intron
ENSG00000183873 (SCN5A)
sodium channel, voltage-gated, type V, alpha subunit 		ENST00000327956 (SCN5A-006) 38633111-38645776 protein_coding
ENST00000333535 (SCN5A-014) 38548066-38649628 protein_coding
ENST00000413689 (SCN5A-001) 38548062-38649672 protein_coding
ENST00000414099 (SCN5A-004) 38548057-38633349 protein_coding
ENST00000423572 (SCN5A-003) 38548062-38633362 protein_coding
ENST00000425664 (SCN5A-201) 38548062-38649672 protein_coding
ENST00000443581 (SCN5A-202) 38548062-38649672 protein_coding
ENST00000449557 (SCN5A-010) 38550321-38633316 protein_coding
ENST00000450102 (SCN5A-008) 38549968-38633349 protein_coding
ENST00000451551 (SCN5A-203) 38548062-38649673 protein_coding
ENST00000455624 (SCN5A-002) 38549128-38633332 protein_coding
ENST00000464652 (SCN5A-011) 38552981-38554549 processed_transcript
ENST00000476683 (SCN5A-013) 38629842-38633220 retained_intron
ENST00000491944 (SCN5A-005) 38614028-38649673 retained_intron
ENST00000612060 (SCN5A-204) 38614543-38633349 protein_coding
ENSG00000230683 (DDTP1)
D-dopachrome tautomerase pseudogene 1 		ENST00000443589 (DDTP1-001) 38515448-38515830 processed_pseudogene
ENSG00000232439 (RPL18AP7)
ribosomal protein L18a pseudogene 7 		ENST00000435924 (RPL18AP7-001) 38526802-38527325 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0005VU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000042787-ENSMUSG00000032511 CGP 10090 9:119444923-119579016
GeneTranscriptPositionBiotype
ENSMUSG00000032511 (Scn5a)
sodium channel, voltage-gated, type V, alpha 		ENSMUST00000065196 (Scn5a-201) 119483408-119562678 protein_coding
ENSMUST00000117911 (Scn5a-001) 119483410-119579016 protein_coding
ENSMUST00000120420 (Scn5a-002) 119484324-119579016 protein_coding
ENSMUST00000138934 (Scn5a-003) 119562537-119563503 protein_coding
ENSMUSG00000042787 (Exog)
endo/exonuclease (5'-3'), endonuclease G-like 		ENSMUST00000035094 (Exog-201) 119444923-119465517 protein_coding
ENSMUST00000164213 (Exog-202) 119444951-119464230 protein_coding

Mus musculus Ensembl (GRCm38)

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Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005VU_0001ENSG00000157036ENST00000287675ENST00000412107ENST00000422077ENST00000431472ENST00000436414ENST00000438992ENST00000443942ENST00000447573ENST00000450732ENST00000453767ENST00000454803ENST00000457367ENST00000470291ENST00000474071ENST00000483749ENST00000489813ENSG00000183873ENST00000327956ENST00000333535ENST00000413689ENST00000414099ENST00000423572ENST00000425664ENST00000443581ENST00000449557ENST00000450102ENST00000451551ENST00000455624ENST00000464652ENST00000476683ENST00000491944ENST00000612060ENSG00000230683ENST00000443589ENSG00000232439ENST00000435924CIL_0005VU_0002ENSMUSG00000032511ENSMUST00000065196ENSMUST00000117911ENSMUST00000120420ENSMUST00000138934ENSMUSG00000042787ENSMUST00000035094ENSMUST00000164213
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005VU_0001ENSG00000157036ENST00000287675ENST00000422077ENST00000431472ENST00000436414ENST00000438992ENST00000447573ENST00000457367ENST00000483749ENSG00000183873ENST00000327956ENST00000333535ENST00000413689ENST00000414099ENST00000423572ENST00000425664ENST00000443581ENST00000449557ENST00000450102ENST00000451551ENST00000455624ENST00000464652ENST00000491944ENST00000612060ENSG00000230683ENST00000443589ENSG00000232439ENST00000435924CIL_0005VU_0002ENSMUSG00000032511ENSMUST00000065196ENSMUST00000117911ENSMUST00000120420ENSMUST00000138934ENSMUSG00000042787ENSMUST00000035094ENSMUST00000164213
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000157036 ENST00000287675 0.803±0.00 N/A N/A 0.548±0.28 0.860±0.22 0.528±0.00 4.864±0.00 0.885±0.77 1.319±0.00 0.860±0.00 N/A 1.223±0.41 1.148±0.35 1.677±0.17
ENST00000412107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422077 N/A N/A N/A N/A 1.592±0.00 N/A N/A 0.952±0.00 0.304±0.00 N/A 1.384±0.00 N/A N/A N/A
ENST00000431472 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.251±0.00 N/A N/A
ENST00000436414 N/A N/A 0.742±0.00 1.077±0.00 N/A 0.756±0.00 1.345±0.00 N/A N/A 3.622±0.00 N/A N/A N/A N/A
ENST00000438992 N/A N/A N/A N/A N/A N/A N/A N/A 0.115±0.00 N/A N/A N/A N/A N/A
ENST00000443942 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447573 N/A N/A 0.635±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.350±0.00 N/A N/A
ENST00000450732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454803 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457367 N/A 1.222±0.00 N/A 1.134±0.00 N/A 0.267±0.00 3.506±0.00 0.532±0.00 0.125±0.00 N/A N/A N/A 0.579±0.07 1.308±0.00
ENST00000470291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474071 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483749 N/A N/A N/A N/A N/A N/A N/A 0.343±0.00 N/A N/A 0.552±0.00 N/A N/A N/A
ENST00000489813 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000183873 ENST00000327956 N/A N/A N/A N/A N/A N/A N/A 0.300±0.00 N/A N/A N/A N/A N/A N/A
ENST00000333535 N/A N/A N/A 0.115±0.00 N/A 0.026±0.00 13.010±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000413689 N/A N/A N/A N/A 0.051±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000414099 0.017±0.00 0.046±0.00 N/A N/A N/A 0.029±0.00 N/A N/A N/A N/A 0.100±0.00 0.028±0.00 0.225±0.13 N/A
ENST00000423572 0.090±0.00 N/A N/A N/A N/A 0.024±0.00 9.214±6.26 N/A N/A N/A N/A N/A N/A N/A
ENST00000425664 N/A N/A N/A N/A N/A 0.012±0.00 N/A 0.046±0.00 N/A N/A N/A N/A N/A N/A
ENST00000443581 N/A N/A N/A N/A N/A N/A 8.427±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000449557 0.026±0.00 N/A N/A 0.045±0.00 0.051±0.00 N/A 4.928±0.00 N/A 0.093±0.00 0.086±0.00 N/A N/A N/A N/A
ENST00000450102 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.189±0.00 N/A 0.043±0.00
ENST00000451551 N/A N/A N/A N/A 0.048±0.00 N/A N/A N/A N/A N/A 0.090±0.00 0.413±0.00 N/A 0.219±0.00
ENST00000455624 N/A N/A N/A N/A N/A 0.041±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464652 N/A N/A N/A N/A 0.967±0.00 N/A N/A N/A 0.359±0.00 N/A N/A N/A N/A N/A
ENST00000476683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491944 N/A N/A N/A N/A N/A 0.216±0.00 N/A N/A 0.097±0.00 N/A N/A 0.119±0.00 N/A N/A
ENST00000612060 N/A 0.141±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000230683 ENST00000443589 N/A N/A N/A 0.313±0.00 0.290±0.00 0.156±0.00 0.126±0.02 N/A N/A 0.700±0.00 N/A N/A N/A 0.109±0.05
ENSG00000232439 ENST00000435924 0.461±0.00 0.978±0.00 0.557±0.00 N/A 0.381±0.00 0.043±0.00 0.155±0.09 0.046±0.00 N/A N/A N/A 0.278±0.17 0.147±0.00 0.231±0.19
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032511 ENSMUST00000065196 N/A 0.098±0.02 N/A N/A N/A 0.086±0.01 19.739±7.56 0.127±0.05 0.028±0.00 N/A 0.104±0.04 0.284±0.04 0.091±0.06 0.109±0.05
ENSMUST00000117911 0.107±0.00 0.072±0.03 N/A 0.138±0.00 0.396±0.00 0.148±0.00 N/A N/A 0.014±0.00 N/A N/A 0.228±0.12 0.075±0.06 N/A
ENSMUST00000120420 0.233±0.07 0.049±0.02 N/A 0.067±0.00 0.491±0.13 0.124±0.05 11.500±2.29 0.147±0.03 0.010±0.01 0.964±0.17 0.076±0.05 0.406±0.21 0.021±0.00 0.200±0.10
ENSMUST00000138934 N/A 0.495±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000042787 ENSMUST00000035094 0.384±0.14 0.490±0.12 0.302±0.03 3.247±1.58 0.284±0.14 0.304±0.10 0.181±0.07 0.215±0.07 0.304±0.17 0.472±0.15 0.156±0.05 0.677±0.26 0.514±0.22 0.320±0.06
ENSMUST00000164213 2.330±0.43 1.001±0.18 1.494±0.08 3.903±0.46 1.743±0.58 1.438±0.34 0.457±0.12 0.749±0.10 1.055±0.68 1.172±0.11 0.646±0.19 2.072±0.50 3.186±1.01 1.356±0.51

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