C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005WD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000166189-ENSG00000198728 CGP 9606 10:102065390-102120453
GeneTranscriptPositionBiotype
ENSG00000166189 (HPS6)
Hermansky-Pudlak syndrome 6 		ENST00000299238 (HPS6-001) 102065390-102068038 protein_coding
ENSG00000198728 (LDB1)
LIM domain binding 1 		ENST00000361198 (LDB1-001) 102107560-102114946 protein_coding
ENST00000425280 (LDB1-201) 102107583-102120453 protein_coding
ENST00000461873 (LDB1-002) 102110392-102111133 processed_transcript
ENST00000490751 (LDB1-003) 102110630-102120448 processed_transcript
ENSG00000224302 (RP11-302K17.3)
 ENST00000448532 (RP11-302K17.3-001) 102085476-102085730 processed_pseudogene
ENSG00000229629 (RP11-302K17.4)
 ENST00000454105 (RP11-302K17.4-001) 102089968-102090062 processed_pseudogene
CIL_0005WD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000074811-ENSMUSG00000025223 CGP 10090 19:46003478-46045214
GeneTranscriptPositionBiotype
ENSMUSG00000025223 (Ldb1)
LIM domain binding 1 		ENSMUST00000026252 (Ldb1-001) 46032689-46044914 protein_coding
ENSMUST00000056931 (Ldb1-003) 46032594-46039621 protein_coding
ENSMUST00000126320 (Ldb1-006) 46033745-46034878 retained_intron
ENSMUST00000136203 (Ldb1-005) 46034051-46036000 retained_intron
ENSMUST00000137771 (Ldb1-004) 46033425-46039481 protein_coding
ENSMUST00000152946 (Ldb1-002) 46032593-46045214 protein_coding
ENSMUST00000156585 (Ldb1-007) 46032689-46045210 protein_coding
ENSMUST00000185355 (Ldb1-201) 46032616-46045211 protein_coding
ENSMUSG00000055491 (Pprc1)
peroxisome proliferative activated receptor, gamma, coactivator-related 1 		ENSMUST00000062322 (Pprc1-002) 46056584-46072909 protein_coding
ENSMUST00000099392 (Pprc1-003) 46056581-46072915 protein_coding
ENSMUST00000111899 (Pprc1-001) 46056539-46072911 protein_coding
ENSMUST00000126127 (Pprc1-009) 46057236-46062628 protein_coding
ENSMUST00000128386 (Pprc1-008) 46056832-46061458 processed_transcript
ENSMUST00000133101 (Pprc1-011) 46067834-46069088 processed_transcript
ENSMUST00000134015 (Pprc1-005) 46044886-46062197 processed_transcript
ENSMUST00000135327 (Pprc1-006) 46056832-46062438 protein_coding
ENSMUST00000146882 (Pprc1-012) 46071754-46072801 retained_intron
ENSMUST00000147640 (Pprc1-010) 46057259-46062644 protein_coding
ENSMUST00000150158 (Pprc1-007) 46056864-46062803 protein_coding
ENSMUST00000153111 (Pprc1-004) 46064081-46072801 retained_intron
ENSMUSG00000074811 (Hps6)
Hermansky-Pudlak syndrome 6 		ENSMUST00000099393 (Hps6-201) 46003478-46006173 protein_coding
ENSMUSG00000097690 (4930505N22Rik)
RIKEN cDNA 4930505N22 gene 		ENSMUST00000181820 (4930505N22Rik-201) 45998137-46013386 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005WD_0001ENSG00000166189ENST00000299238ENSG00000198728ENST00000361198ENST00000425280ENST00000461873ENST00000490751ENSG00000224302ENST00000448532ENSG00000229629ENST00000454105CIL_0005WD_0002ENSMUSG00000025223ENSMUST00000026252ENSMUST00000056931ENSMUST00000126320ENSMUST00000136203ENSMUST00000137771ENSMUST00000152946ENSMUST00000156585ENSMUST00000185355ENSMUSG00000055491ENSMUST00000062322ENSMUST00000099392ENSMUST00000111899ENSMUST00000126127ENSMUST00000128386ENSMUST00000133101ENSMUST00000134015ENSMUST00000135327ENSMUST00000146882ENSMUST00000147640ENSMUST00000150158ENSMUST00000153111ENSMUSG00000074811ENSMUST00000099393ENSMUSG00000097690ENSMUST00000181820
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005WD_0001ENSG00000166189ENST00000299238ENSG00000198728ENST00000361198ENST00000425280ENST00000490751ENSG00000224302ENST00000448532ENSG00000229629ENST00000454105CIL_0005WD_0002ENSMUSG00000025223ENSMUST00000026252ENSMUST00000137771ENSMUST00000152946ENSMUST00000156585ENSMUST00000185355ENSMUSG00000055491ENSMUST00000062322ENSMUST00000099392ENSMUST00000111899ENSMUSG00000074811ENSMUST00000099393ENSMUSG00000097690ENSMUST00000181820
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000166189 ENST00000299238 4.297±0.00 7.728±0.00 1.435±0.00 3.270±0.26 3.953±2.37 3.194±0.15 2.192±1.09 4.949±3.43 3.221±0.77 1.845±0.60 2.625±1.66 6.934±2.56 11.476±1.29 3.337±0.50
ENSG00000198728 ENST00000361198 N/A N/A N/A N/A 1.983±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000425280 7.105±0.00 N/A 4.315±0.00 7.429±0.00 N/A 4.488±0.00 4.550±1.23 2.706±0.00 4.443±0.00 3.569±0.00 1.631±0.00 21.501±13.20 8.946±1.88 4.461±0.00
ENST00000461873 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490751 N/A N/A N/A N/A 3.238±0.00 N/A N/A 4.064±0.00 N/A 5.249±0.00 N/A 19.218±0.00 17.802±0.00 15.198±0.00
ENSG00000224302 ENST00000448532 0.199±0.00 0.205±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.401±0.22 N/A 0.045±0.00
ENSG00000229629 ENST00000454105 N/A N/A N/A N/A 0.209±0.00 N/A N/A N/A N/A N/A 0.202±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025223 ENSMUST00000026252 41.171±0.41 18.032±1.65 53.537±2.32 97.266±15.79 47.549±7.38 19.875±2.59 17.169±3.21 23.847±1.99 37.589±35.23 53.259±6.01 6.341±1.06 48.170±22.93 57.838±36.90 5.523±1.22
ENSMUST00000056931 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126320 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136203 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137771 16.324±0.42 N/A 23.222±0.00 44.916±7.55 35.436±20.15 N/A N/A N/A 47.848±17.16 N/A 3.400±0.23 36.501±11.40 19.291±7.33 1.097±0.00
ENSMUST00000152946 22.692±5.41 12.267±3.32 25.472±0.41 26.011±0.76 21.104±2.34 13.222±1.77 8.097±0.27 9.890±1.40 11.986±8.86 20.067±4.46 4.011±0.72 25.104±6.28 13.572±6.43 2.412±0.00
ENSMUST00000156585 N/A 13.155±1.74 N/A N/A N/A 15.867±0.00 10.540±0.00 N/A N/A N/A N/A 45.056±0.00 N/A N/A
ENSMUST00000185355 27.000±0.00 10.210±1.13 N/A N/A N/A 20.257±0.00 N/A N/A N/A N/A 5.415±1.62 37.787±0.00 N/A N/A
ENSMUSG00000055491 ENSMUST00000062322 7.712±0.00 N/A N/A N/A 9.564±0.77 4.910±0.00 N/A N/A 1.677±0.37 N/A 1.087±0.08 10.840±1.21 6.760±4.74 1.932±0.36
ENSMUST00000099392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.171±0.00 N/A
ENSMUST00000111899 10.623±2.46 6.441±0.63 N/A N/A 7.344±0.00 6.139±0.96 3.270±0.14 3.198±0.41 4.938±3.24 7.665±0.97 2.307±0.31 12.153±2.45 6.394±1.78 2.171±0.33
ENSMUST00000126127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133101 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134015 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135327 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150158 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153111 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000074811 ENSMUST00000099393 3.459±0.45 7.713±0.32 3.185±0.25 1.564±1.33 3.581±1.67 3.420±0.30 1.291±0.23 2.144±0.26 1.266±0.16 3.517±0.57 1.348±0.18 5.888±0.87 4.239±1.34 0.502±0.07
ENSMUSG00000097690 ENSMUST00000181820 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.928±1.03

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