C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005WJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000107862-ENSG00000077150 CGP 9606 10:102245532-102402529
GeneTranscriptPositionBiotype
ENSG00000077150 (NFKB2)
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) 		ENST00000189444 (NFKB2-001) 102395706-102402524 protein_coding
ENST00000336486 (NFKB2-008) 102398073-102400061 processed_transcript
ENST00000369966 (NFKB2-003) 102394597-102402524 protein_coding
ENST00000428099 (NFKB2-201) 102394110-102402529 protein_coding
ENST00000467116 (NFKB2-002) 102395706-102399218 retained_intron
ENST00000471698 (NFKB2-004) 102395693-102396785 protein_coding
ENST00000473400 (NFKB2-005) 102400578-102401269 retained_intron
ENST00000593908 (NFKB2-006) 102394110-102395958 processed_transcript
ENST00000601386 (NFKB2-007) 102394110-102396298 protein_coding
ENST00000610498 (NFKB2-202) 102395706-102399215 protein_coding
ENSG00000107862 (GBF1)
golgi brefeldin A resistant guanine nucleotide exchange factor 1 		ENST00000369983 (GBF1-001) 102245532-102382899 protein_coding
ENST00000476019 (GBF1-002) 102359099-102361187 processed_transcript
ENSG00000251989 (AL160011.1)
 ENST00000516180 (AL160011.1-201) 102261230-102261306 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0005WJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025224-ENSMUSG00000025225 CGP 10090 19:46152509-46312090
GeneTranscriptPositionBiotype
ENSMUSG00000025224 (Gbf1)
golgi-specific brefeldin A-resistance factor 1 		ENSMUST00000026254 (Gbf1-001) 46152509-46286510 protein_coding
ENSMUST00000175706 (Gbf1-015) 46280335-46283485 retained_intron
ENSMUST00000175747 (Gbf1-011) 46280180-46283682 nonsense_mediated_decay
ENSMUST00000175868 (Gbf1-003) 46152530-46255997 retained_intron
ENSMUST00000175878 (Gbf1-008) 46283001-46283940 retained_intron
ENSMUST00000176046 (Gbf1-010) 46284563-46285980 retained_intron
ENSMUST00000176355 (Gbf1-007) 46152573-46246187 processed_transcript
ENSMUST00000176422 (Gbf1-004) 46269718-46273394 retained_intron
ENSMUST00000176525 (Gbf1-009) 46282843-46284026 processed_transcript
ENSMUST00000176574 (Gbf1-006) 46254067-46259765 protein_coding
ENSMUST00000176576 (Gbf1-012) 46279873-46281009 retained_intron
ENSMUST00000176853 (Gbf1-013) 46268797-46270711 processed_transcript
ENSMUST00000176992 (Gbf1-002) 46246088-46286509 protein_coding
ENSMUST00000177406 (Gbf1-005) 46152548-46268186 retained_intron
ENSMUST00000177512 (Gbf1-014) 46266112-46269797 nonsense_mediated_decay
ENSMUSG00000025225 (Nfkb2)
nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100 		ENSMUST00000073116 (Nfkb2-201) 46304737-46312090 protein_coding
ENSMUST00000111881 (Nfkb2-202) 46305695-46312090 protein_coding
ENSMUSG00000037126 (Psd)
pleckstrin and Sec7 domain containing 		ENSMUST00000041391 (Psd-201) 46312087-46327156 protein_coding
ENSMUST00000096029 (Psd-202) 46312087-46327156 protein_coding
ENSMUSG00000086816 (Gm16726)
predicted gene, 16726 		ENSMUST00000130184 (Gm16726-001) 46264539-46267669 processed_transcript
ENSMUSG00000093525 (Gm8974)
predicted gene 8974 		ENSMUST00000175770 (Gm8974-001) 46205380-46205858 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005WJ_0001ENSG00000077150ENST00000189444ENST00000336486ENST00000369966ENST00000428099ENST00000467116ENST00000471698ENST00000473400ENST00000593908ENST00000601386ENST00000610498ENSG00000107862ENST00000369983ENST00000476019ENSG00000251989ENST00000516180CIL_0005WJ_0002ENSMUSG00000025224ENSMUST00000026254ENSMUST00000175706ENSMUST00000175747ENSMUST00000175868ENSMUST00000175878ENSMUST00000176046ENSMUST00000176355ENSMUST00000176422ENSMUST00000176525ENSMUST00000176574ENSMUST00000176576ENSMUST00000176853ENSMUST00000176992ENSMUST00000177406ENSMUST00000177512ENSMUSG00000025225ENSMUST00000073116ENSMUST00000111881ENSMUSG00000037126ENSMUST00000041391ENSMUST00000096029ENSMUSG00000086816ENSMUST00000130184ENSMUSG00000093525ENSMUST00000175770
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005WJ_0001ENSG00000077150ENST00000189444ENST00000336486ENST00000369966ENST00000428099ENST00000467116ENST00000610498ENSG00000107862ENST00000369983ENSG00000251989ENST00000516180CIL_0005WJ_0002ENSMUSG00000025224ENSMUST00000026254ENSMUST00000176992ENSMUST00000177406ENSMUSG00000025225ENSMUST00000073116ENSMUST00000111881ENSMUSG00000037126ENSMUST00000041391ENSMUST00000096029ENSMUSG00000086816ENSMUST00000130184ENSMUSG00000093525ENSMUST00000175770
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000077150 ENST00000189444 5.943±0.00 26.349±0.00 0.468±0.00 1.633±1.39 3.725±1.22 6.983±6.58 1.130±0.90 2.498±2.06 0.985±0.51 21.705±19.44 8.682±8.13 14.707±10.13 10.651±1.66 6.863±2.43
ENST00000336486 7.620±0.00 N/A N/A 0.842±0.00 N/A N/A 0.464±0.00 1.873±0.00 3.726±0.00 N/A N/A 27.184±22.00 14.223±0.00 5.798±0.00
ENST00000369966 4.132±0.00 10.324±0.00 N/A N/A 2.398±0.00 4.772±0.00 0.780±0.00 3.858±0.00 0.756±0.00 0.444±0.00 3.004±0.00 5.246±0.00 N/A 3.942±0.00
ENST00000428099 N/A N/A N/A N/A N/A 1.169±0.00 N/A N/A N/A N/A N/A 0.636±0.00 2.668±0.00 N/A
ENST00000467116 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.449±0.00 N/A N/A N/A N/A
ENST00000471698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000593908 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000601386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000610498 N/A N/A N/A 0.746±0.61 2.334±0.00 N/A N/A N/A N/A N/A N/A 5.771±4.91 4.683±0.00 1.692±0.00
ENSG00000107862 ENST00000369983 11.585±0.00 5.756±0.00 1.887±0.00 7.910±3.50 6.101±3.23 2.875±1.00 13.302±0.00 14.906±0.00 4.364±2.36 3.557±2.80 18.255±13.19 9.394±5.28 8.373±4.19 20.376±0.33
ENST00000476019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000251989 ENST00000516180 N/A N/A N/A N/A N/A 0.494±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025224 ENSMUST00000026254 10.490±2.38 18.908±0.71 5.437±0.01 6.962±2.67 11.184±3.75 16.696±1.04 4.710±0.22 6.346±1.88 3.694±1.55 11.495±2.16 4.424±1.33 12.153±4.48 6.097±1.54 20.298±0.88
ENSMUST00000175706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175747 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176046 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176422 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176525 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176574 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176576 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176853 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176992 8.438±0.28 5.297±1.71 8.317±0.09 11.232±0.99 6.316±1.35 8.752±1.31 4.410±0.56 5.553±1.98 4.134±0.54 6.291±1.32 4.763±0.74 7.256±2.59 10.160±3.24 14.953±0.90
ENSMUST00000177406 N/A N/A N/A N/A 4.094±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177512 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000025225 ENSMUST00000073116 14.116±2.95 27.444±1.65 10.097±0.71 N/A 25.930±14.94 30.603±7.34 5.663±1.82 8.152±0.95 3.346±0.65 20.574±5.24 2.030±0.65 24.309±10.87 5.156±2.16 N/A
ENSMUST00000111881 4.605±1.36 5.394±0.89 N/A N/A N/A N/A 2.598±0.33 2.444±0.43 1.044±0.36 4.342±0.00 1.387±0.31 7.583±5.44 2.290±1.12 N/A
ENSMUSG00000037126 ENSMUST00000041391 N/A 2.800±0.05 N/A 25.837±9.91 N/A N/A N/A N/A 1.729±0.94 N/A N/A 5.293±1.75 N/A 2.381±2.06
ENSMUST00000096029 N/A N/A N/A 21.294±11.20 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.226±3.04
ENSMUSG00000086816 ENSMUST00000130184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 23.635±0.00
ENSMUSG00000093525 ENSMUST00000175770 0.080±0.00 0.242±0.01 0.167±0.02 0.317±0.16 0.229±0.19 0.357±0.17 0.070±0.00 0.075±0.01 0.175±0.14 0.213±0.02 N/A 0.365±0.20 0.234±0.00 0.231±0.01

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