C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005X7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000106868-ENSG00000119314 CGP 9606 9:112040785-112333667
GeneTranscriptPositionBiotype
ENSG00000106868 (SUSD1)
sushi domain containing 1 		ENST00000355396 (SUSD1-002) 112040785-112175185 protein_coding
ENST00000374263 (SUSD1-201) 112040785-112175297 protein_coding
ENST00000374264 (SUSD1-006) 112041079-112175267 protein_coding
ENST00000374270 (SUSD1-003) 112040785-112175408 protein_coding
ENST00000415074 (SUSD1-005) 112098582-112142466 protein_coding
ENST00000475283 (SUSD1-001) 112041083-112058471 nonsense_mediated_decay
ENST00000482851 (SUSD1-004) 112124296-112146176 processed_transcript
ENST00000528773 (SUSD1-008) 112102176-112112083 retained_intron
ENST00000529933 (SUSD1-007) 112080074-112104958 processed_transcript
ENST00000532348 (SUSD1-009) 112112792-112142588 retained_intron
ENSG00000200261 (Y_RNA)
Y RNA 		ENST00000363391 (Y_RNA.1-328) 112169286-112169397 misc_RNA
ENSG00000225513 (RP11-165N19.2)
 ENST00000451825 (RP11-165N19.2-001) 112173522-112173971 processed_pseudogene
ENSG00000230081 (HSPE1P28)
heat shock 10kDa protein 1 pseudogene 28 		ENST00000443139 (HSPE1P28-001) 112280978-112281335 processed_pseudogene
ENSG00000242256 (RN7SL57P)
RNA, 7SL, cytoplasmic 57, pseudogene 		ENST00000493687 (RN7SL57P-201) 112242550-112242839 misc_RNA
ENSG00000243911 (RN7SL430P)
RNA, 7SL, cytoplasmic 430, pseudogene 		ENST00000464176 (RN7SL430P-201) 112272596-112272837 misc_RNA
CIL_0005X7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038578-ENSMUSG00000028382 CGP 10090 4:59314683-59549364
GeneTranscriptPositionBiotype
ENSMUSG00000028382 (Ptbp3)
polypyrimidine tract binding protein 3 		ENSMUST00000030076 (Ptbp3-001) 59471868-59549364 protein_coding
ENSMUST00000102883 (Ptbp3-002) 59475259-59549284 protein_coding
ENSMUST00000134879 (Ptbp3-003) 59493189-59549257 nonsense_mediated_decay
ENSMUST00000140925 (Ptbp3-005) 59517473-59548737 protein_coding
ENSMUST00000148331 (Ptbp3-006) 59476648-59549314 protein_coding
ENSMUST00000151313 (Ptbp3-004) 59501103-59514348 retained_intron
ENSMUST00000172471 (Ptbp3-013) 59481443-59493285 protein_coding
ENSMUST00000172768 (Ptbp3-010) 59476583-59548775 protein_coding
ENSMUST00000173268 (Ptbp3-012) 59476935-59485772 retained_intron
ENSMUST00000173699 (Ptbp3-008) 59475711-59549243 protein_coding
ENSMUST00000173884 (Ptbp3-011) 59493239-59549265 protein_coding
ENSMUST00000174586 (Ptbp3-009) 59472048-59549295 protein_coding
ENSMUST00000174748 (Ptbp3-007) 59481448-59549252 nonsense_mediated_decay
ENSMUSG00000038578 (Susd1)
sushi domain containing 1 		ENSMUST00000040166 (Susd1-201) 59314683-59438633 protein_coding
ENSMUST00000107544 (Susd1-001) 59314754-59438633 protein_coding
ENSMUST00000136077 (Susd1-002) 59331957-59362982 retained_intron
ENSMUST00000136562 (Susd1-003) 59329210-59333022 retained_intron
ENSMUST00000136942 (Susd1-004) 59314683-59315966 retained_intron
ENSMUSG00000080831 (Gm12529)
predicted gene 12529 		ENSMUST00000119529 (Gm12529-001) 59532747-59533014 processed_pseudogene
ENSMUSG00000083979 (Gm12527)
predicted gene 12527 		ENSMUST00000117967 (Gm12527-001) 59368303-59368866 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005X7_0001ENSG00000106868ENST00000355396ENST00000374263ENST00000374264ENST00000374270ENST00000415074ENST00000475283ENST00000482851ENST00000528773ENST00000529933ENST00000532348ENSG00000200261ENST00000363391ENSG00000225513ENST00000451825ENSG00000230081ENST00000443139ENSG00000242256ENST00000493687ENSG00000243911ENST00000464176CIL_0005X7_0002ENSMUSG00000028382ENSMUST00000030076ENSMUST00000102883ENSMUST00000134879ENSMUST00000140925ENSMUST00000148331ENSMUST00000151313ENSMUST00000172471ENSMUST00000172768ENSMUST00000173268ENSMUST00000173699ENSMUST00000173884ENSMUST00000174586ENSMUST00000174748ENSMUSG00000038578ENSMUST00000040166ENSMUST00000107544ENSMUST00000136077ENSMUST00000136562ENSMUST00000136942ENSMUSG00000080831ENSMUST00000119529ENSMUSG00000083979ENSMUST00000117967
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005X7_0001ENSG00000106868ENST00000355396ENST00000374263ENST00000374264ENST00000374270ENST00000415074ENST00000475283ENST00000482851ENST00000532348ENSG00000200261ENST00000363391ENSG00000225513ENST00000451825ENSG00000230081ENST00000443139ENSG00000242256ENST00000493687ENSG00000243911ENST00000464176CIL_0005X7_0002ENSMUSG00000028382ENSMUST00000030076ENSMUST00000102883ENSMUST00000148331ENSMUST00000172768ENSMUST00000174586ENSMUST00000174748ENSMUSG00000038578ENSMUST00000040166ENSMUST00000107544ENSMUST00000136562ENSMUST00000136942ENSMUSG00000080831ENSMUST00000119529ENSMUSG00000083979ENSMUST00000117967
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000106868 ENST00000355396 N/A N/A N/A 2.424±1.21 N/A 0.504±0.00 N/A N/A N/A N/A 0.242±0.00 1.223±0.00 2.002±0.01 N/A
ENST00000374263 N/A N/A N/A 1.472±0.00 1.299±0.00 N/A 1.049±0.00 0.443±0.00 0.453±0.05 1.299±0.52 N/A 6.565±0.00 1.682±0.00 N/A
ENST00000374264 N/A N/A N/A N/A 0.719±0.00 0.658±0.31 0.243±0.00 0.660±0.00 1.344±0.00 1.145±0.00 N/A 1.021±0.00 3.836±2.11 1.303±0.00
ENST00000374270 0.626±0.00 3.483±0.00 1.419±0.00 0.976±0.28 1.067±0.43 2.867±0.00 1.377±0.00 6.475±0.00 0.263±0.00 N/A N/A 2.183±1.10 2.557±0.68 1.912±0.76
ENST00000415074 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.626±0.00 N/A N/A N/A
ENST00000475283 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.198±0.00 N/A N/A 1.715±0.00
ENST00000482851 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.467±0.00 N/A N/A N/A
ENST00000528773 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529933 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532348 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.602±0.00 N/A N/A N/A
ENSG00000200261 ENST00000363391 N/A 1.235±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.272±0.00
ENSG00000225513 ENST00000451825 N/A 0.145±0.00 N/A 0.109±0.00 0.156±0.00 0.284±0.00 0.088±0.00 N/A 0.152±0.00 0.048±0.00 0.084±0.00 0.191±0.09 N/A 0.132±0.00
ENSG00000230081 ENST00000443139 N/A N/A N/A N/A N/A 1.672±0.00 N/A 0.384±0.27 N/A N/A N/A 0.725±0.00 0.093±0.00 N/A
ENSG00000242256 ENST00000493687 N/A 0.117±0.00 N/A N/A 0.122±0.00 0.559±0.00 N/A N/A 1.643±0.00 N/A N/A 0.732±0.40 N/A 0.053±0.00
ENSG00000243911 ENST00000464176 N/A 0.084±0.00 N/A N/A N/A 6.170±0.00 0.322±0.00 N/A 0.629±0.00 1.787±0.00 N/A 1.403±1.16 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028382 ENSMUST00000030076 7.918±1.98 3.353±0.00 6.923±1.26 3.037±1.74 7.960±2.22 6.196±2.50 2.362±0.46 7.365±2.68 8.309±4.15 9.730±2.35 0.535±0.25 5.604±2.40 25.123±9.26 1.173±0.58
ENSMUST00000102883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.333±0.00 N/A N/A
ENSMUST00000134879 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148331 N/A 10.033±4.01 N/A N/A N/A 4.120±0.00 N/A N/A N/A N/A N/A N/A 29.361±0.00 N/A
ENSMUST00000151313 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172471 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172768 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.125±0.00
ENSMUST00000173268 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173699 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173884 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174586 6.733±1.80 6.483±1.65 4.119±0.04 1.690±0.09 6.038±1.92 9.609±1.75 1.651±0.44 3.888±2.25 7.400±4.61 8.924±2.63 0.521±0.15 12.913±4.36 19.660±2.46 1.038±0.28
ENSMUST00000174748 9.194±1.36 15.125±3.92 N/A N/A 15.994±3.15 20.616±6.02 2.390±0.00 7.981±2.13 5.652±0.59 12.091±2.01 N/A 20.063±4.58 N/A 3.358±0.26
ENSMUSG00000038578 ENSMUST00000040166 2.344±1.86 0.813±0.33 2.208±0.82 0.460±0.07 2.276±1.03 0.179±0.03 0.120±0.00 1.696±0.36 4.272±3.30 0.888±0.21 0.050±0.04 7.488±2.30 6.426±3.06 0.866±0.17
ENSMUST00000107544 N/A 0.784±0.16 N/A N/A 0.457±0.00 0.357±0.12 0.101±0.01 N/A N/A 0.347±0.00 0.018±0.00 2.309±0.00 4.220±0.00 0.359±0.00
ENSMUST00000136077 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136562 N/A N/A N/A N/A N/A N/A 0.392±0.00 N/A N/A N/A 0.081±0.02 N/A N/A N/A
ENSMUST00000136942 N/A N/A N/A 0.821±0.00 3.037±0.73 0.950±0.46 N/A N/A 0.899±0.00 N/A 0.101±0.08 N/A N/A N/A
ENSMUSG00000080831 ENSMUST00000119529 0.490±0.02 1.852±0.00 N/A N/A 0.875±0.39 N/A 0.345±0.00 0.366±0.01 1.160±0.47 1.188±0.17 N/A 3.134±0.10 0.998±0.40 0.711±0.00
ENSMUSG00000083979 ENSMUST00000117967 N/A N/A 0.090±0.04 0.036±0.00 0.087±0.00 0.149±0.01 N/A N/A 0.048±0.03 0.093±0.00 N/A 0.330±0.27 0.148±0.04 0.080±0.00

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