C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005XS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000113621-ENSG00000132570 CGP 9606 5:134873803-135007959
GeneTranscriptPositionBiotype
ENSG00000113621 (TXNDC15)
thioredoxin domain containing 15 		ENST00000358387 (TXNDC15-001) 134873803-134901525 protein_coding
ENST00000502625 (TXNDC15-009) 134899937-134901511 processed_transcript
ENST00000505174 (TXNDC15-003) 134892178-134899899 retained_intron
ENST00000506350 (TXNDC15-010) 134888153-134896276 processed_transcript
ENST00000506916 (TXNDC15-007) 134874376-134888062 protein_coding
ENST00000507024 (TXNDC15-005) 134874397-134901511 nonsense_mediated_decay
ENST00000508779 (TXNDC15-004) 134875342-134900128 protein_coding
ENST00000508810 (TXNDC15-006) 134875096-134888180 protein_coding
ENST00000509954 (TXNDC15-008) 134893626-134899857 protein_coding
ENST00000511070 (TXNDC15-002) 134874371-134900039 nonsense_mediated_decay
ENSG00000132570 (PCBD2)
pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2 		ENST00000254908 (PCBD2-001) 134904906-134961277 protein_coding
ENST00000504352 (PCBD2-005) 134905173-135007959 nonsense_mediated_decay
ENST00000510013 (PCBD2-004) 134908830-134959095 processed_transcript
ENST00000512783 (PCBD2-002) 134905120-134969660 protein_coding
ENSG00000152705 (CATSPER3)
cation channel, sperm associated 3 		ENST00000282611 (CATSPER3-001) 134967906-135011707 protein_coding
ENST00000511235 (CATSPER3-002) 134967907-134995854 processed_transcript
ENSG00000198868 (MIR4461)
microRNA 4461 		ENST00000454092 (MIR4461-001) 134928030-134928326 processed_pseudogene
ENSG00000244921 (CTB-36O1.7)
 ENST00000501056 (CTB-36O1.7-001) 134923303-134924049 processed_pseudogene
ENSG00000247627 (MTND4P12)
MT-ND4 pseudogene 12 		ENST00000498999 (MTND4P12-001) 134926660-134928036 processed_pseudogene
ENSG00000248923 (MTND5P11)
MT-ND5 pseudogene 11 		ENST00000511037 (MTND5P11-001) 134924648-134926459 processed_pseudogene
ENSG00000249119 (MTND6P4)
MT-ND6 pseudogene 4 		ENST00000506002 (MTND6P4-001) 134924123-134924644 processed_pseudogene
ENSG00000249192 (CTB-36O1.3)
 ENST00000509243 (CTB-36O1.3-001) 134928393-134928527 processed_pseudogene
ENSG00000279799 (AC006077.3)
 ENST00000623591 (AC006077.3-001) 134905235-134905691 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0005XS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021497-ENSMUSG00000021496 CGP 10090 13:55714650-55776830
GeneTranscriptPositionBiotype
ENSMUSG00000021496 (Pcbd2)
pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2 		ENSMUST00000021958 (Pcbd2-201) 55727368-55776828 protein_coding
ENSMUST00000124968 (Pcbd2-001) 55727368-55776830 protein_coding
ENSMUSG00000021497 (Txndc15)
thioredoxin domain containing 15 		ENSMUST00000021959 (Txndc15-201) 55714650-55726221 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005XS_0001ENSG00000113621ENST00000358387ENST00000502625ENST00000505174ENST00000506350ENST00000506916ENST00000507024ENST00000508779ENST00000508810ENST00000509954ENST00000511070ENSG00000132570ENST00000254908ENST00000504352ENST00000510013ENST00000512783ENSG00000152705ENST00000282611ENST00000511235ENSG00000198868ENST00000454092ENSG00000244921ENST00000501056ENSG00000247627ENST00000498999ENSG00000248923ENST00000511037ENSG00000249119ENST00000506002ENSG00000249192ENST00000509243ENSG00000279799ENST00000623591CIL_0005XS_0002ENSMUSG00000021496ENSMUST00000021958ENSMUST00000124968ENSMUSG00000021497ENSMUST00000021959
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005XS_0001ENSG00000113621ENST00000358387ENST00000502625ENST00000505174ENST00000506916ENST00000507024ENST00000508779ENST00000508810ENST00000509954ENST00000511070ENSG00000132570ENST00000254908ENST00000510013ENST00000512783ENSG00000152705ENST00000282611ENSG00000198868ENST00000454092ENSG00000244921ENST00000501056ENSG00000247627ENST00000498999ENSG00000248923ENST00000511037ENSG00000249119ENST00000506002ENSG00000249192ENST00000509243ENSG00000279799ENST00000623591CIL_0005XS_0002ENSMUSG00000021496ENSMUST00000021958ENSMUST00000124968ENSMUSG00000021497ENSMUST00000021959
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000113621 ENST00000358387 N/A N/A 1.302±0.00 3.391±0.00 1.542±0.00 2.703±0.00 1.161±0.00 1.222±0.00 2.256±0.00 1.375±0.00 0.896±0.00 2.513±1.53 4.336±0.84 2.696±0.00
ENST00000502625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.704±0.00 N/A N/A
ENST00000505174 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.750±0.00 N/A N/A N/A N/A
ENST00000506350 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506916 N/A N/A N/A N/A N/A N/A 5.194±0.00 N/A N/A N/A N/A 10.649±0.00 26.321±0.00 N/A
ENST00000507024 6.128±0.00 7.425±0.00 N/A 5.435±0.00 5.000±0.00 4.310±2.54 6.664±0.00 13.294±0.00 2.946±1.06 3.893±0.60 4.757±0.00 9.185±0.50 5.024±0.47 13.768±0.00
ENST00000508779 N/A N/A 1.357±0.00 3.299±0.00 1.736±0.00 N/A 5.762±0.00 3.803±0.00 N/A N/A 1.972±0.00 4.526±2.32 10.120±3.24 8.387±0.00
ENST00000508810 N/A N/A N/A N/A 6.307±0.00 N/A N/A N/A N/A 7.053±0.00 N/A N/A 21.061±0.00 N/A
ENST00000509954 N/A N/A N/A N/A N/A N/A N/A N/A 8.723±0.00 8.649±0.00 3.851±0.00 13.413±0.00 36.090±0.00 24.774±0.00
ENST00000511070 12.175±0.00 12.960±0.00 1.776±0.00 9.658±3.82 7.642±2.69 13.968±0.00 2.955±0.00 13.610±0.00 6.170±1.09 4.144±0.00 5.390±0.00 16.196±0.00 N/A 20.187±0.00
ENSG00000132570 ENST00000254908 1.098±0.00 1.927±0.00 N/A 0.909±0.39 1.611±0.85 0.944±0.00 5.153±0.00 2.281±1.28 1.652±0.07 1.008±0.00 4.709±0.97 1.754±0.09 1.454±0.13 N/A
ENST00000504352 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.659±0.00 N/A N/A
ENST00000512783 0.439±0.00 0.767±0.00 0.683±0.00 0.425±0.00 0.743±0.50 0.333±0.00 0.522±0.30 0.708±0.59 0.570±0.06 0.460±0.31 1.008±0.70 0.579±0.16 0.205±0.09 0.817±0.10
ENSG00000152705 ENST00000282611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.752±0.00 N/A 21.097±4.85
ENST00000511235 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000198868 ENST00000454092 N/A N/A N/A N/A N/A 2.082±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000244921 ENST00000501056 3.771±0.00 40.430±0.00 N/A 6.390±0.00 2.346±1.67 3.657±3.54 12.443±0.00 10.326±0.00 6.322±0.00 1.162±0.75 8.723±6.82 2.167±2.04 0.946±0.00 35.599±34.38
ENSG00000247627 ENST00000498999 600.615±0.00 271.350±0.00 N/A 6.269±0.43 3.475±3.25 326.967±326.10 652.940±0.00 211.558±210.58 286.670±0.00 1.369±0.61 422.077±0.00 112.499±43.76 20.728±19.15 3.291±0.17
ENSG00000248923 ENST00000511037 0.668±0.00 3.314±0.00 N/A 1.499±0.00 1.193±0.00 0.280±0.13 1.416±0.00 2.839±0.00 0.583±0.00 0.121±0.07 1.423±0.00 4.002±1.49 0.381±0.33 1.564±0.97
ENSG00000249119 ENST00000506002 0.585±0.00 1.622±0.00 N/A 1.769±0.00 2.150±0.00 0.455±0.00 1.819±0.00 3.631±0.00 0.798±0.00 0.371±0.00 1.545±0.00 0.824±0.10 0.539±0.28 0.555±0.06
ENSG00000249192 ENST00000509243 0.281±0.00 0.675±0.00 N/A 0.421±0.00 N/A 0.258±0.00 0.953±0.00 N/A N/A 0.208±0.00 0.922±0.00 6.141±3.94 0.669±0.00 2.105±1.86
ENSG00000279799 ENST00000623591 0.219±0.00 0.776±0.00 0.405±0.00 0.091±0.00 0.590±0.00 0.155±0.00 0.076±0.00 0.521±0.00 0.074±0.00 0.884±0.00 N/A 0.888±0.09 0.515±0.06 0.651±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021496 ENSMUST00000021958 45.649±3.77 53.714±9.54 42.624±5.66 4.127±0.79 22.493±10.31 42.692±11.29 28.518±7.03 97.778±7.45 37.169±17.94 47.098±11.71 5.958±0.41 29.419±11.49 9.868±3.89 4.324±0.63
ENSMUST00000124968 N/A N/A 4.738±0.00 4.184±0.39 14.314±3.90 N/A N/A 52.653±37.97 13.181±4.41 19.696±0.00 6.012±0.00 16.647±9.02 11.450±2.88 N/A
ENSMUSG00000021497 ENSMUST00000021959 32.228±6.17 51.847±4.54 21.376±2.12 35.577±13.07 23.425±8.59 25.398±4.51 10.154±3.17 26.223±2.43 28.069±16.55 23.372±2.65 16.993±1.08 37.906±7.04 30.130±10.09 4.091±0.52

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